Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21122 Trifolium pratense HOM05D002551 ORTHO05D002832 9.3e-53 209.9 105 100.0
TPR.G30346 Trifolium pratense HOM05D002551 ORTHO05D002832 2.2e-46 188.7 105 90.5
Medtr7g079740 Medicago truncatula HOM05D002551 ORTHO05D002832 5.7e-42 174.1 103 87.4
Medtr7g079770 Medicago truncatula HOM05D002551 ORTHO05D002832 9.7e-42 173.3 103 85.4
Medtr7g079780 Medicago truncatula HOM05D002551 ORTHO05D002832 9.7e-42 173.3 103 84.5
Medtr7g079820 Medicago truncatula HOM05D002551 ORTHO05D002832 1.3e-41 172.9 103 87.4
Medtr7g079730 Medicago truncatula HOM05D002551 ORTHO05D002832 2.8e-41 171.8 103 85.4
TPR.G7474 Trifolium pratense HOM05D002551 ORTHO05D002832 8.2e-41 170.2 99 86.9
TPR.G28217 Trifolium pratense HOM05D002551 ORTHO05D002832 4.5e-39 164.5 103 85.4
Psat0s4851g0160 Pisum sativum HOM05D002551 ORTHO05D002832 9.4e-37 156.8 102 78.4
Psat0s7016g0040 Pisum sativum HOM05D002551 ORTHO05D002832 9.4e-37 156.8 102 78.4
TPR.G13819 Trifolium pratense HOM05D002551 ORTHO05D002832 1.1e-34 149.8 82 90.2
TPR.G39874 Trifolium pratense HOM05D002551 ORTHO05D002832 3.3e-34 148.3 77 90.9
Psat0s4055g0080 Pisum sativum HOM05D002551 ORTHO05D002832 2.1e-28 129.0 98 71.4
Ca_10865_v3 Cicer arietinum L. HOM05D002551 ORTHO05D002832 3.0e-27 125.2 73 78.1
Medtr1g103400 Medicago truncatula HOM05D002551 ORTHO05D002832 3.0e-27 125.2 73 76.7
Ca_10867_v3 Cicer arietinum L. HOM05D002551 ORTHO05D002832 9.7e-26 120.2 80 66.2
Psat6g206160 Pisum sativum HOM05D002551 ORTHO05D002832 1.8e-24 115.9 73 75.3
Glyma.20G146200 Glycine max HOM05D002551 ORTHO05D002832 1.2e-23 113.2 102 60.8
Glyma.20G148200 Glycine max HOM05D002551 ORTHO05D002832 1.2e-23 113.2 102 60.8
Psat6g206200 Pisum sativum HOM05D002551 ORTHO05D002832 1.2e-23 113.2 73 74.0
Lj5g0023538 Lotus japonicus HOM05D002551 ORTHO05D002832 8.5e-22 107.1 71 66.2
Glyma.10G246500 Glycine max HOM05D002551 ORTHO05D002832 9.4e-21 103.6 79 60.8
Phvul.007G059700 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.7e-20 102.1 99 53.5
Phvul.007G059725 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.7e-20 102.1 99 53.5
Phvul.007G059750 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.7e-20 102.1 99 53.5
Phvul.007G059775 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.7e-20 102.1 99 53.5
Phvul.007G060000 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.7e-20 102.1 99 53.5
VMungo0331G0684 Vigna mungo HOM05D002551 ORTHO05D002832 4.7e-20 101.3 105 50.5
Glyma.10G246300 Glycine max HOM05D002551 ORTHO05D002832 4.0e-19 98.2 70 60.0
Phvul.007G059800 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 6.8e-19 97.4 74 62.2
Lj5g0023246 Lotus japonicus HOM05D002551 ORTHO05D002832 2.0e-18 95.9 70 61.4
Lalb_Chr22g0356821 Lupinus albus HOM05D002551 ORTHO05D002832 2.0e-18 95.9 71 59.2
Lalb_Chr06g0170401 Lupinus albus HOM05D002551 ORTHO05D002832 3.4e-18 95.1 69 59.4
Lalb_Chr06g0170421 Lupinus albus HOM05D002551 ORTHO05D002832 3.4e-18 95.1 69 59.4
Glyma.20G148300 Glycine max HOM05D002551 ORTHO05D002832 5.7e-18 94.4 69 59.4
Glyma.20G148400 Glycine max HOM05D002551 ORTHO05D002832 5.7e-18 94.4 69 59.4
VMungo0720G2384 Vigna mungo HOM05D002551 ORTHO05D002832 2.2e-17 92.4 74 58.1
VMungo0720G0948 Vigna mungo HOM05D002551 ORTHO05D002832 1.8e-16 89.4 73 56.2
arahy.Tifrunner.gnm1.ann1.6TFR0H Arachis hypogaea HOM05D002551 ORTHO05D002832 3.5e-15 85.1 76 50.0
arahy.Tifrunner.gnm1.ann1.E5WGR0 Arachis hypogaea HOM05D002551 ORTHO05D002832 5.9e-15 84.3 79 48.1
Glyma.10G246401 Glycine max HOM05D002551 ORTHO05D002832 4.2e-13 78.2 89 42.7
SHI00485 Sapria himalayana HOM05D002551 ORTHO05D002832 4.7e-12 74.7 71 42.3
QL06p001653 Quercus lobata HOM05D002551 ORTHO05D002832 5.2e-11 71.2 79 39.2
TAR362G0951 Trochodendron aralioides HOM05D002551 ORTHO05D002832 5.2e-11 71.2 79 36.7
Psat0s5g0160 Pisum sativum HOM05D002551 ORTHO05D002832 6.8e-11 70.9 36 86.1
CANSAT78G1619 Cannabis sativa HOM05D002551 ORTHO05D002832 3.4e-10 68.6 77 36.4
CANSAT78G2456 Cannabis sativa HOM05D002551 ORTHO05D002832 3.4e-10 68.6 77 36.4
Psat5g199920 Pisum sativum HOM05D002551 ORTHO05D002832 3.4e-10 68.6 35 85.7
Ciclev10006494m.g Citrus clementina HOM05D002551 ORTHO05D002832 4.4e-10 68.2 74 37.8
ECA247G2018 Erigeron canadensis HOM05D002551 ORTHO05D002832 7.5e-10 67.4 77 36.4
Migut.G00363 Erythranthe guttata HOM05D002551 ORTHO05D002832 9.8e-10 67.0 70 38.6
Ah.02g111200 Amaranthus hybridus HOM05D002551 ORTHO05D002832 1.3e-09 66.6 68 39.7
Lalb_Chr06g0170441 Lupinus albus HOM05D002551 ORTHO05D002832 1.3e-09 66.6 55 52.7
Nitab4.5_0002307g0040 Nicotiana tabacum HOM05D002551 ORTHO05D002832 1.3e-09 66.6 92 35.9
Nn1g02380 Nelumbo nucifera HOM05D002551 ORTHO05D002832 2.2e-09 65.9 71 38.0
EL10Ac5g10531 Beta vulgaris HOM05D002551 ORTHO05D002832 2.8e-09 65.5 68 36.8
Manes.05G079000 Manihot esculenta HOM05D002551 ORTHO05D002832 2.8e-09 65.5 77 36.4
Prupe.1G018000 Prunus persica HOM05D002551 ORTHO05D002832 2.8e-09 65.5 80 40.0
Sc24g0003280 Simmondsia chinensis HOM05D002551 ORTHO05D002832 2.8e-09 65.5 72 36.1
TAR633G2055 Trochodendron aralioides HOM05D002551 ORTHO05D002832 2.8e-09 65.5 76 34.2
Nitab4.5_0004062g0030 Nicotiana tabacum HOM05D002551 ORTHO05D002832 4.9e-09 64.7 97 36.1
MELO3C006516.2 Cucumis melo HOM05D002551 ORTHO05D002832 6.3e-09 64.3 81 37.0
FvH4_2g23190 Fragaria vesca HOM05D002551 ORTHO05D002832 6.3e-09 64.3 77 33.8
GSVIVG01001185001 Vitis vinifera HOM05D002551 ORTHO05D002832 6.3e-09 64.3 80 33.8
Aqoxy2G03431 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 8.3e-09 63.9 77 36.4
Peaxi162Scf00230g00126 Petunia axillaris HOM05D002551 ORTHO05D002832 8.3e-09 63.9 74 35.1
TWI75G1269 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 8.3e-09 63.9 74 35.1
CsaV3_3G013090 Cucumis sativus L. HOM05D002551 ORTHO05D002832 1.1e-08 63.5 81 35.8
Solyc09g082360.4 Solanum lycopersicum HOM05D002551 ORTHO05D002832 1.1e-08 63.5 83 32.5
CDE07G1821 Ceratophyllum demersum HOM05D003259 ORTHO05D002832 1.4e-08 63.2 77 32.5
PSO832G4341 Papaver somniferum HOM05D002551 ORTHO05D002832 1.4e-08 63.2 73 35.6
CiPaw.01G198100 Carya illinoinensis HOM05D002551 ORTHO05D002832 1.8e-08 62.8 77 31.2
Peaxi162Scf00092g00216 Petunia axillaris HOM05D002551 ORTHO05D002832 1.8e-08 62.8 73 35.6
PGR004G1796 Punica granatum HOM05D002551 ORTHO05D002832 1.8e-08 62.8 71 39.4
Aqoxy2G03428 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 2.4e-08 62.4 73 34.2
ClCG05G005030 Citrullus lanatus HOM05D002551 ORTHO05D002832 2.4e-08 62.4 77 32.5
Nn1g02381 Nelumbo nucifera HOM05D002551 ORTHO05D002832 2.4e-08 62.4 76 35.5
Nitab4.5_0000252g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 2.4e-08 62.4 74 35.1
Nitab4.5_0001729g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 2.4e-08 62.4 74 35.1
CAN.G1699.2 Capsicum annuum HOM05D002551 ORTHO05D002832 3.1e-08 62.0 73 31.5
Haze_04679 Corylus avellana HOM05D002551 ORTHO05D002832 3.1e-08 62.0 74 32.4
MD13G1196800 Malus domestica HOM05D002551 ORTHO05D002832 3.1e-08 62.0 81 38.3
Phvul.007G173600 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 3.1e-08 62.0 71 39.4
Cfa006172 Carpinus fangiana HOM05D002551 ORTHO05D002832 4.1e-08 61.6 72 33.3
Lsat_1_v5_gn_9_6181 Lactuca sativa HOM05D002551 ORTHO05D002832 4.1e-08 61.6 73 35.6
Nitab4.5_0004062g0010 Nicotiana tabacum HOM05D002551 ORTHO05D002832 4.1e-08 61.6 73 35.6
Sopen09g031230 Solanum pennellii HOM05D002551 ORTHO05D002832 4.1e-08 61.6 75 33.3
TWI73G1150 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 4.1e-08 61.6 74 32.4
CAN.G1699.1 Capsicum annuum HOM05D002551 ORTHO05D002832 5.4e-08 61.2 78 30.8
RcHm_v2.0_Chr6g0290441 Rosa chinensis HOM05D002551 ORTHO05D002832 5.4e-08 61.2 69 34.8
FAN15G1237 Fragaria x ananassa HOM05D002551 ORTHO05D002832 7.0e-08 60.8 77 32.5
HanXRQChr05g0154401 Helianthus annuus HOM05D002551 ORTHO05D002832 7.0e-08 60.8 79 31.6
Prupe.8G237500 Prunus persica HOM05D002551 ORTHO05D002832 7.0e-08 60.8 73 37.0
Actinidia21130 Actinidia chinensis HOM05D002551 ORTHO05D002832 9.2e-08 60.5 74 35.1
Nitab4.5_0002307g0030 Nicotiana tabacum HOM05D002551 ORTHO05D002832 9.2e-08 60.5 73 34.2
Sed0010447 Sechium edule HOM05D002551 ORTHO05D002832 9.2e-08 60.5 71 33.8
EL10Ac3g06479 Beta vulgaris HOM05D002551 ORTHO05D002832 1.2e-07 60.1 77 31.2
MBI01_g44542_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 1.2e-07 60.1 77 33.8
Potri.005G212266 Populus trichocarpa HOM05D002551 ORTHO05D002832 1.2e-07 60.1 76 32.9
Solyc09g082340.2 Solanum lycopersicum HOM05D002551 ORTHO05D002832 1.2e-07 60.1 76 32.9
AUR62034727 Chenopodium quinoa HOM05D002551 ORTHO05D002832 1.6e-07 59.7 77 31.2
MD03G1261200 Malus domestica HOM05D002551 ORTHO05D002832 1.6e-07 59.7 70 35.7
MD16G1197200 Malus domestica HOM05D002551 ORTHO05D002832 1.6e-07 59.7 71 39.4
Sopen09g031220 Solanum pennellii HOM05D002551 ORTHO05D002832 1.6e-07 59.7 76 32.9
Eucgr.D01140 Eucalyptus grandis HOM05D002551 ORTHO05D002832 3.5e-07 58.5 73 30.1
MBI01_g44541_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 3.5e-07 58.5 74 33.8
arahy.Tifrunner.gnm1.ann1.R5FKIY Arachis hypogaea HOM05D002551 ORTHO05D002832 4.5e-07 58.2 72 31.9
AUR62033661 Chenopodium quinoa HOM05D002551 ORTHO05D002832 4.5e-07 58.2 70 32.9
Dinv32904 Davidia involucrata HOM05D002551 ORTHO05D002832 4.5e-07 58.2 74 33.8
FAN20G1127 Fragaria x ananassa HOM05D002551 ORTHO05D002832 4.5e-07 58.2 77 31.2
PGSC0003DMG400019354 Solanum tuberosum HOM05D002551 ORTHO05D002832 4.5e-07 58.2 74 33.8
PGSC0003DMG400032247 Solanum tuberosum HOM05D002551 ORTHO05D002832 4.5e-07 58.2 76 30.3
arahy.Tifrunner.gnm1.ann1.WD5WT3 Arachis hypogaea HOM05D002551 ORTHO05D002832 5.9e-07 57.8 72 33.3
Migut.N02035 Erythranthe guttata HOM05D002551 ORTHO05D002832 5.9e-07 57.8 71 32.4
Actinidia24912 Actinidia chinensis HOM05D002551 ORTHO05D002832 7.7e-07 57.4 73 32.9
Aa31LG8G9150 Aethionema arabicum HOM05D002551 ORTHO05D002832 7.7e-07 57.4 74 36.5
Migut.O00476 Erythranthe guttata HOM05D002551 ORTHO05D002832 7.7e-07 57.4 71 32.4
PSO210G4289 Papaver somniferum HOM05D002551 ORTHO05D002832 1.0e-06 57.0 56 41.1
SGA_v2.0_scaffold81G26035 Striga asiatica HOM05D002551 ORTHO05D002832 1.0e-06 57.0 82 26.8
Lj5g0011762 Lotus japonicus HOM05D002551 ORTHO05D002832 1.3e-06 56.6 69 34.8
TPR.G27145 Trifolium pratense HOM05D002551 ORTHO05D002832 1.3e-06 56.6 77 29.9
MBI01_g42408_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 1.7e-06 56.2 79 29.1
Rhsim01G0273000 Rhododendron simsii HOM05D002551 ORTHO05D002832 1.7e-06 56.2 71 31.0
vmacro14908 Vaccinium macrocarpon HOM05D002551 ORTHO05D002832 1.7e-06 56.2 73 31.5
Aqoxy5G00432 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 2.9e-06 55.5 70 32.9
Aqoxy5G03465 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 2.9e-06 55.5 74 31.1
Aqoxy5G03501 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 2.9e-06 55.5 74 31.1
Cfa008469 Carpinus fangiana HOM05D002551 ORTHO05D002832 2.9e-06 55.5 79 32.9
ClCG09G007260 Citrullus lanatus HOM05D002551 ORTHO05D002832 2.9e-06 55.5 69 34.8
Thecc.04G235500 Theobroma cacao HOM05D002551 ORTHO05D002832 2.9e-06 55.5 70 38.6
CSS0025481 Camellia sinensis var. sinensis HOM05D002551 ORTHO05D002832 3.8e-06 55.1 68 35.3
CAN.G1476.2 Capsicum annuum HOM05D002551 ORTHO05D002832 5.0e-06 54.7 73 28.8
CiPaw.08G107900 Carya illinoinensis HOM05D002551 ORTHO05D002832 5.0e-06 54.7 74 28.4
Gohir.A09G217700 Gossypium hirsutum HOM05D002551 ORTHO05D002832 6.6e-06 54.3 69 39.1
Gohir.D09G220100 Gossypium hirsutum HOM05D002551 ORTHO05D002832 6.6e-06 54.3 69 39.1
Gorai.006G241100 Gossypium raimondii HOM05D002551 ORTHO05D002832 6.6e-06 54.3 69 39.1
FAN17G0400 Fragaria x ananassa HOM05D002551 ORTHO05D002832 8.6e-06 53.9 75 33.3
GSVIVG01001186001 Vitis vinifera HOM05D003028 ORTHO05D003465 8.6e-06 53.9 69 34.8


User provided reference genes

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