Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.7e-46 188.3 99 100.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.0e-45 186.4 99 99.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 5.7e-44 180.6 99 96.0
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.8e-43 178.3 100 95.0
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 7.7e-41 170.2 100 91.0
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.1e-39 166.4 100 88.0
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.7e-35 151.4 95 83.2
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 4.9e-35 151.0 95 84.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.8e-34 149.1 95 82.1
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.8e-34 149.1 103 78.6
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.4e-34 147.5 95 80.0
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 7.0e-34 147.1 95 80.0
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 9.2e-34 146.7 88 83.0
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.6e-33 146.0 95 80.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 2.0e-33 145.6 92 77.2
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.0e-33 145.6 92 77.2
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.7e-33 145.2 89 84.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 5.9e-33 144.1 95 73.7
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.0e-32 141.0 93 76.3
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 8.6e-32 140.2 95 74.7
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 8.6e-32 140.2 90 77.8
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.5e-31 139.4 89 79.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.9e-31 139.0 93 75.3
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.9e-31 139.0 95 75.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.9e-31 139.0 95 75.8
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.5e-31 138.7 95 75.8
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 7.3e-31 137.1 93 74.2
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 9.5e-31 136.7 89 75.3
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.6e-30 136.0 87 75.9
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.6e-30 136.0 93 74.2
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.1e-30 135.6 88 73.9
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.8e-30 135.2 88 77.3
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.6e-30 134.8 94 71.3
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 3.6e-30 134.8 94 72.3
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 6.1e-30 134.0 95 70.5
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.1e-30 134.0 93 73.1
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 8.0e-30 133.7 94 71.3
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.0e-29 133.3 94 72.3
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.0e-29 133.3 89 75.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.4e-29 132.9 95 69.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.8e-29 132.5 90 74.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.8e-29 132.5 95 73.7
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.8e-29 132.5 89 71.9
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.3e-29 132.1 89 73.0
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.3e-29 132.1 89 73.0
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.3e-29 132.1 89 73.0
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.3e-29 132.1 98 71.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 4.0e-29 131.3 93 72.0
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 5.2e-29 131.0 96 77.1
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 6.8e-29 130.6 99 68.7
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 6.8e-29 130.6 99 68.7
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 6.8e-29 130.6 89 71.9
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.8e-29 130.6 89 71.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 6.8e-29 130.6 95 72.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 6.8e-29 130.6 92 72.8
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 6.8e-29 130.6 92 72.8
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 8.9e-29 130.2 89 70.8
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 8.9e-29 130.2 89 68.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.2e-28 129.8 95 71.6
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.0e-28 129.0 94 70.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.0e-28 129.0 94 71.3
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.0e-28 129.0 92 71.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.0e-28 129.0 92 71.7
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.6e-28 128.6 88 72.7
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.6e-28 128.6 94 71.3
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.6e-28 128.6 94 70.2
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.6e-28 128.6 92 71.7
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 2.6e-28 128.6 89 70.8
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 3.4e-28 128.3 92 73.9
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 4.4e-28 127.9 90 74.4
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 5.7e-28 127.5 97 71.1
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.5e-28 127.1 94 69.1
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 9.8e-28 126.7 89 74.2
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.2e-27 125.6 98 68.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.4e-27 124.0 94 70.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 8.3e-27 123.6 96 67.7
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.8e-26 122.5 95 68.4
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.4e-26 122.1 98 67.3
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.2e-26 121.7 101 72.3
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 3.2e-26 121.7 94 66.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 4.1e-26 121.3 94 68.1
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.1e-26 121.3 96 65.6
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 5.4e-26 120.9 94 68.1
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 9.2e-26 120.2 96 65.6
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 9.2e-26 120.2 96 65.6
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 9.2e-26 120.2 96 65.6
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.2e-25 119.8 94 68.1
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-25 119.4 94 64.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.0e-25 119.0 90 68.9
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.0e-25 119.0 93 66.7
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.7e-25 118.6 97 64.9
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.7e-25 118.6 96 65.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.7e-25 118.6 94 63.8
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.9e-25 117.5 96 65.6
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.9e-25 117.5 101 69.3
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 5.9e-25 117.5 96 63.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-24 116.7 96 63.5
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.0e-24 116.7 96 63.5
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.0e-24 116.7 94 61.7
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.0e-24 116.7 86 72.1
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.0e-24 116.7 77 70.1
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.7e-24 115.9 92 63.0
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.3e-24 115.5 93 67.7
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 5.0e-24 114.4 89 64.0
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 8.6e-24 113.6 86 69.8
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.1e-23 113.2 94 63.8
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.5e-23 112.1 91 65.9
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 4.3e-23 111.3 92 60.9
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 7.3e-23 110.5 98 62.2
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 3.6e-22 108.2 94 58.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.0e-22 107.1 90 62.2
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.8e-21 105.9 67 77.6
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.3e-21 105.5 87 65.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.3e-21 105.5 68 83.8
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.0e-21 104.8 89 61.8
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 4.0e-21 104.8 58 96.6
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.2e-20 103.2 92 59.8
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.2e-20 103.2 95 62.1
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.2e-20 103.2 92 58.7
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.0e-20 102.4 94 57.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 9.8e-20 100.1 87 66.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.7e-19 99.4 91 59.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.7e-19 99.4 88 53.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.1e-18 94.7 92 56.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.0e-17 92.4 96 54.2
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.3e-16 89.0 96 55.2
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.0e-16 88.6 92 56.5
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.0e-16 88.6 92 56.5
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 6.6e-16 87.4 89 52.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.1e-15 86.7 78 62.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 3.3e-15 85.1 95 49.5
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 3.3e-15 85.1 103 50.5
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 4.3e-15 84.7 97 49.5
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 9.5e-15 83.6 91 53.8
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.6e-14 82.8 58 79.3
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 4.7e-14 81.3 95 48.4
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 6.2e-14 80.9 96 47.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 6.2e-14 80.9 91 49.5
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.4e-13 79.7 91 49.5
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.8e-13 79.3 91 48.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.1e-13 78.6 91 51.6
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.0e-13 78.2 68 57.4
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 4.0e-13 78.2 39 94.9
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 4.0e-13 78.2 94 48.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 5.2e-13 77.8 89 48.3
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 8.9e-13 77.0 58 74.1
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-12 75.9 58 69.0
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.0e-12 75.9 88 44.3
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 5.8e-12 74.3 96 46.9
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.2e-10 68.6 51 70.6
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.1e-09 65.9 67 58.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.1e-09 65.9 87 39.1
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.7e-09 65.5 40 77.5
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 7.8e-09 63.9 60 56.7
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.3e-08 62.4 90 42.2
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 5.6e-07 57.8 96 37.5
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 1.2e-06 56.6 55 50.9
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.1e-06 55.8 58 55.2


User provided reference genes

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