Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 5.9e-116 421.0 233 100.0
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.1e-88 330.5 237 81.9
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 7.5e-87 324.3 236 82.6
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 6.6e-75 284.6 236 69.9
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 3.6e-65 252.3 231 63.6
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 4.5e-63 245.4 232 68.5
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.8e-62 242.3 239 63.2
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 7.9e-60 234.6 231 65.4
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.2e-55 220.7 229 56.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.4e-55 219.2 229 64.2
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.7e-54 216.9 249 63.1
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.6e-52 210.3 233 52.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.1e-52 209.9 230 52.2
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 2.7e-52 209.5 248 61.3
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 3.5e-52 209.1 230 59.6
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 4.6e-52 208.8 233 55.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.6e-52 208.8 228 52.2
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.9e-50 203.4 228 52.6
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.0e-48 195.7 234 51.3
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 2.6e-47 193.0 232 56.5
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 7.6e-47 191.4 228 53.1
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 7.6e-47 191.4 237 48.1
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.0e-46 191.0 227 50.2
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.3e-46 190.7 231 48.9
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.9e-46 188.7 242 49.6
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 4.9e-46 188.7 228 48.2
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.1e-45 187.6 231 52.8
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.1e-45 187.6 231 49.4
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.5e-45 185.3 226 50.0
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.5e-45 185.3 226 50.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 5.5e-45 185.3 225 47.1
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 9.3e-45 184.5 234 52.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 3.5e-44 182.6 230 48.7
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 7.9e-44 181.4 235 51.1
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.9e-44 181.4 230 48.7
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.9e-44 181.4 230 48.7
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 7.9e-44 181.4 234 46.6
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-43 181.0 226 49.1
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.8e-43 180.3 229 48.9
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 5.1e-43 178.7 238 53.4
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.1e-43 178.7 230 48.3
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 5.1e-43 178.7 227 47.1
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 6.7e-43 178.3 224 47.8
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.1e-42 177.6 232 47.0
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-42 177.6 227 48.9
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.1e-42 177.6 228 47.8
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.5e-42 176.4 235 49.4
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 4.3e-42 175.6 223 46.6
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 9.7e-42 174.5 236 46.2
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 9.7e-42 174.5 234 47.4
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 3.7e-41 172.6 214 53.3
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 4.8e-41 172.2 225 46.2
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.8e-41 172.2 237 45.1
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 6.3e-41 171.8 225 47.1
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 6.3e-41 171.8 242 44.2
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 8.2e-41 171.4 229 44.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.8e-40 170.2 207 49.8
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.5e-39 167.2 228 45.2
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.4e-39 166.0 228 46.5
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 7.6e-39 164.9 236 45.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-38 164.5 228 46.1
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-38 164.5 228 46.9
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-38 163.7 228 49.1
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.7e-38 163.7 225 46.2
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-38 163.3 228 46.1
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.4e-37 160.6 259 52.1
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.2e-37 159.5 226 49.6
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 5.5e-37 158.7 203 46.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.3e-37 157.9 231 46.8
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 2.1e-36 156.8 151 58.3
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 2.1e-36 156.8 231 50.6
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 6.1e-36 155.2 227 42.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.3e-35 154.1 238 44.1
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.8e-35 153.7 227 42.3
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.5e-34 149.8 232 43.1
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 4.3e-34 149.1 235 42.1
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 4.3e-34 149.1 235 42.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.3e-33 147.5 223 40.4
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.7e-33 147.1 227 41.4
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.2e-33 146.7 226 43.4
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.7e-33 146.0 231 43.3
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.2e-33 144.8 224 42.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.8e-32 143.7 226 41.2
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.4e-32 143.3 210 42.9
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.4e-32 143.3 239 43.1
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 3.1e-32 142.9 228 38.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.3e-32 142.1 230 38.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 9.1e-32 141.4 250 40.0
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.0e-31 140.2 230 41.3
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.5e-31 139.0 238 44.1
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 4.5e-31 139.0 234 48.3
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 7.7e-31 138.3 232 43.1
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 7.7e-31 138.3 231 41.1
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.7e-31 138.3 186 45.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.3e-30 137.5 232 47.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.3e-30 137.5 257 38.9
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.9e-30 136.3 232 42.2
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.8e-30 136.0 230 42.2
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.5e-30 134.8 186 44.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 7.2e-29 131.7 166 51.2
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.4e-29 131.3 206 40.8
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.1e-28 130.2 232 40.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.1e-28 130.2 232 40.5
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.1e-28 130.2 206 42.2
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-28 129.8 227 39.6
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 4.7e-28 129.0 232 40.1
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 4.7e-28 129.0 232 40.1
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 4.7e-28 129.0 232 40.1
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 6.1e-28 128.6 231 39.4
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 6.1e-28 128.6 231 39.4
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 6.1e-28 128.6 231 39.4
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.8e-27 127.1 217 38.7
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.9e-27 125.9 232 40.5
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 5.1e-27 125.6 231 39.0
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 5.1e-27 125.6 231 39.0
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.6e-26 123.2 233 40.8
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 3.3e-26 122.9 233 40.3
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 7.4e-26 121.7 233 39.9
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 7.4e-26 121.7 233 39.9
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 7.4e-26 121.7 233 39.9
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 9.7e-26 121.3 234 39.3
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.7e-25 120.6 218 37.6
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 2.2e-25 120.2 233 39.5
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.8e-24 117.1 263 35.7
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.4e-24 116.7 226 37.6
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.4e-24 116.7 219 37.0
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.4e-24 116.7 159 49.7
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 4.1e-24 115.9 227 35.7
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 5.3e-24 115.5 256 35.9
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.1e-24 114.8 230 41.3
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.2e-23 114.4 207 36.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.0e-23 113.6 191 38.2
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-23 112.8 232 39.2
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.5e-23 112.5 212 37.3
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.7e-22 110.5 222 36.9
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 8.5e-22 108.2 205 37.6
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.5e-22 108.2 229 43.2
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.4e-21 107.5 112 58.0
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.1e-20 103.6 209 36.4
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.7e-20 103.2 112 53.6
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 3.6e-20 102.8 111 54.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-19 100.1 137 44.5
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 6.7e-19 98.6 132 47.0
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.6e-18 96.7 199 35.2
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.7e-17 94.0 221 33.0
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.2e-17 93.6 246 33.7
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.8e-16 90.5 222 33.8
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.3e-14 84.3 226 31.0
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.7e-14 84.0 92 54.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.1e-13 81.3 174 34.5
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.5e-13 80.1 223 30.9
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 2.5e-13 80.1 130 44.6
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 4.2e-13 79.3 225 27.6
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 9.4e-13 78.2 110 42.7
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.1e-12 77.0 226 30.5
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.1e-12 77.0 214 31.8
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 8.8e-11 71.6 110 41.8
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.5e-10 70.9 190 32.1
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.3e-10 69.7 196 30.6
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.4e-10 69.3 202 29.7
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.7e-09 67.4 267 34.1
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.7e-09 67.4 233 29.6
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.1e-08 63.2 186 31.2
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.1e-08 63.2 186 31.2
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 4.1e-08 62.8 186 31.2
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 4.1e-08 62.8 186 30.6
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 4.1e-08 62.8 186 31.2
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 9.1e-08 61.6 163 27.0
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.6e-07 60.8 210 27.6


User provided reference genes

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