Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 1.3e-140 503.1 252 100.0
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 6.7e-97 357.8 252 75.8
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 7.6e-85 317.8 252 67.5
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 1.6e-79 300.1 255 63.1
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.4e-78 297.0 255 62.4
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 3.4e-77 292.4 252 63.5
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 8.5e-76 287.7 288 57.3
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 6.7e-65 251.5 253 57.3
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 9.1e-62 241.1 246 56.1
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 2.2e-60 236.5 195 63.1
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 3.6e-58 229.2 228 56.6
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.2e-53 214.2 251 50.2
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 2.6e-53 213.0 257 49.0
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.7e-52 210.3 252 49.2
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 5.0e-52 208.8 254 49.2
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 9.4e-51 204.5 244 49.6
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 3.0e-49 199.5 257 47.1
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 4.4e-48 195.7 252 46.8
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.7e-47 193.7 244 47.5
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 3.7e-47 192.6 241 47.3
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 4.8e-47 192.2 251 45.0
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.1e-46 191.0 244 47.1
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 1.4e-46 190.7 244 47.1
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.8e-46 190.3 253 47.4
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 7.2e-43 178.3 254 46.9
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 6.1e-42 175.3 253 44.3
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 4.0e-41 172.6 247 42.9
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 8.8e-41 171.4 260 41.5
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 2.8e-39 166.4 243 42.8
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 1.4e-38 164.1 178 55.6
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.4e-38 163.3 218 46.8
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 4.1e-38 162.5 249 42.6
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 7.0e-38 161.8 247 43.7
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 7.0e-38 161.8 248 40.3
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.0e-37 160.2 252 44.8
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.5e-37 159.5 255 40.4
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 5.9e-37 158.7 249 41.4
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 2.5e-35 153.3 244 40.2
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.2e-35 152.5 247 40.5
Medtr3g088090 Medicago truncatula HOM05D005772 ORTHO05D006468 1.2e-34 151.0 112 76.8
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 2.1e-34 150.2 246 38.6
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.8e-34 149.8 247 40.5
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.8e-33 147.1 250 38.4
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 1.8e-33 147.1 250 40.0
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 1.8e-33 147.1 253 38.7
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.3e-33 146.7 249 37.8
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 7.5e-32 141.7 249 38.2
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 9.8e-32 141.4 234 41.0
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.7e-31 140.6 245 36.7
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 4.9e-31 139.0 247 38.9
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 6.3e-31 138.7 244 39.8
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 1.1e-30 137.9 255 38.4
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 1.4e-30 137.5 230 40.0
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.8e-30 137.1 241 38.2
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 3.2e-30 136.3 241 37.8
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 4.1e-30 136.0 248 36.7
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 3.9e-28 129.4 241 38.2
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 5.6e-27 125.6 193 46.1
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 2.8e-26 123.2 217 39.6
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 1.3e-23 114.4 211 37.4
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 3.7e-23 112.8 182 39.6
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 4.9e-23 112.5 245 32.7
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 1.4e-22 110.9 168 42.3
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 7.0e-22 108.6 251 35.1
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 7.0e-22 108.6 248 35.1
VMungo1309G3162 Vigna mungo HOM05D005772 ORTHO05D006468 7.0e-22 108.6 255 37.3
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.6e-21 107.5 197 37.6
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 3.5e-21 106.3 189 37.6
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 2.3e-20 103.6 173 38.2
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 8.6e-20 101.7 218 34.4
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 8.6e-20 101.7 250 31.2
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 1.1e-19 101.3 166 41.0
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.1e-19 101.3 250 32.0
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.1e-19 101.3 185 36.8
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.9e-19 100.5 181 37.0
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 1.9e-19 100.5 199 34.2
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 2.5e-19 100.1 250 30.8
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 2.5e-19 100.1 150 40.7
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.5e-19 100.1 173 38.7
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.5e-19 100.1 247 34.4
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 2.5e-19 100.1 187 36.4
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 7.3e-19 98.6 127 44.9
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 7.3e-19 98.6 210 35.2
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 9.5e-19 98.2 127 41.7
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.2e-18 97.8 191 34.6
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.1e-18 97.1 246 33.3
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.1e-18 97.1 172 36.6
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 3.6e-18 96.3 244 32.4
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 4.7e-18 95.9 222 35.6
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 6.2e-18 95.5 170 36.5
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 6.2e-18 95.5 170 36.5
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 6.2e-18 95.5 218 31.2
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 1.1e-17 94.7 149 38.3
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.4e-17 94.4 194 35.1
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 1.4e-17 94.4 167 35.3
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.3e-17 93.6 218 32.6
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 3.1e-17 93.2 122 41.8
Haze_17513 Corylus avellana HOM05D000187 ORTHO05D000926 3.1e-17 93.2 226 31.4
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 4.0e-17 92.8 189 33.9
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 5.2e-17 92.4 212 33.5
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.0e-16 90.5 244 33.2
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 4.4e-16 89.4 186 37.6
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 5.8e-16 89.0 131 40.5
Lsat_1_v5_gn_8_150021 Lactuca sativa HOM05D041600 ORTHO05D006468 2.2e-15 87.0 175 37.7
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.1e-14 84.7 176 34.1
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 1.9e-14 84.0 129 41.9
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 5.4e-14 82.4 251 29.9
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 9.2e-14 81.6 206 32.0
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 2.1e-13 80.5 65 60.0
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 2.7e-13 80.1 161 32.9
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 7.8e-13 78.6 130 36.9
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 1.0e-12 78.2 253 28.5
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 1.3e-12 77.8 190 34.7
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.7e-12 77.4 175 32.0
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.5e-11 74.3 108 40.7
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 3.3e-11 73.2 215 28.8
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 5.6e-11 72.4 208 30.3
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 7.3e-11 72.0 198 31.8
Nitab4.5_0003012g0080 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.6e-10 70.9 54 57.4
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 3.6e-10 69.7 127 37.8
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 4.7e-10 69.3 127 37.8
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 4.7e-10 69.3 127 37.8
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 4.7e-10 69.3 127 37.8
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 2.3e-09 67.0 204 30.4
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 3.1e-09 66.6 236 29.2
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 8.9e-09 65.1 204 31.4
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 3.4e-08 63.2 205 27.8
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 2.9e-07 60.1 252 25.4
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 8.3e-07 58.5 149 34.2
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 9.2e-06 55.1 105 36.2
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 9.2e-06 55.1 176 33.0
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 9.2e-06 55.1 207 30.0


User provided reference genes

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