Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 2255.7 1231 100.0
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1936.0 1237 84.9
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1869.7 1238 82.6
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1827.8 1225 82.3
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1713.7 1240 76.7
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1680.2 1193 75.4
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1633.2 1192 73.4
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1625.9 1245 72.4
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1622.1 1240 72.4
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1619.4 1241 72.5
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1602.0 1192 72.5
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1271.5 1248 58.6
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1269.6 1210 59.0
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1254.2 1244 58.2
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1253.4 1196 58.9
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1246.5 1185 59.2
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1241.9 1194 57.5
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1233.4 1197 57.3
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1232.6 1187 58.4
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1224.5 1184 57.3
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1223.4 1197 57.5
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1220.7 1243 56.6
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1212.6 1205 56.8
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1211.4 1205 56.9
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1203.7 1239 57.2
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1203.0 1194 57.5
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1201.4 1194 57.0
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1187.9 1185 57.2
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1186.8 1301 54.8
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1184.5 1205 55.9
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1180.2 1294 54.8
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1177.5 1202 56.2
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1176.4 1255 56.4
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1170.6 1209 55.8
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1166.0 1203 55.4
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1157.9 1202 54.8
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1153.3 1201 54.2
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1130.2 1240 55.1
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1116.3 1241 52.5
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1105.1 1260 51.4
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1096.3 1195 54.0
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1095.1 1119 55.6
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1093.2 1191 53.4
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1085.9 1246 54.0
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 3.4e-311 1072.0 1198 52.1
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 7.6e-311 1070.8 1111 55.7
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 7.6e-311 1070.8 1276 51.2
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 1.7e-310 1069.7 1214 51.6
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 2.0e-308 1062.8 1226 51.5
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 6.0e-308 1061.2 1209 51.1
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 4.3e-306 1055.0 1192 51.6
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 9.5e-306 1053.9 1203 52.0
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 6.2e-305 1051.2 1243 51.9
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 8.9e-304 1047.3 1203 50.5
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 5.4e-301 1038.1 1271 49.6
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 5.4e-301 1038.1 1194 50.5
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 1.7e-299 1033.1 1217 50.9
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 1.2e-297 1026.9 766 74.5
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 2.0e-295 1019.6 1207 50.3
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 1.9e-293 1013.1 1191 51.1
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 7.8e-292 1007.7 1197 50.7
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 1.8e-288 996.5 1199 51.4
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 1.2e-279 967.2 1043 53.9
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 4.2e-277 958.7 1188 48.3
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 1.2e-276 957.2 1197 48.0
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 6.7e-275 951.4 1229 47.6
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 9.6e-274 947.6 1268 46.0
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 2.8e-273 946.0 1201 47.8
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 5.3e-272 941.8 1201 48.3
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 1.6e-268 930.2 1210 47.4
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 3.1e-264 916.0 1203 47.5
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 9.0e-264 914.4 1184 46.9
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 1.0e-262 911.0 1211 45.8
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 5.5e-261 905.2 1081 51.0
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 6.7e-259 898.3 1250 46.2
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 1.8e-256 890.2 1198 44.2
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 2.6e-255 886.3 1214 44.6
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 9.1e-248 861.3 1149 45.7
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 6.9e-240 835.1 1315 42.9
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 6.9e-240 835.1 1131 46.2
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.7e-236 823.2 1061 48.1
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.5e-229 800.8 781 59.9
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 3.7e-225 786.2 1195 42.1
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 8.3e-217 758.4 1200 41.1
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 3.2e-200 703.4 1083 42.6
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 6.2e-196 689.1 723 56.2
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 5.0e-190 669.5 981 43.5
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 7.5e-186 655.6 1182 39.0
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 5.3e-163 579.7 401 74.1
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 3.0e-158 563.9 1190 33.9
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 2.0e-154 551.2 618 50.2
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 4.2e-152 543.5 1234 34.0
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 9.0e-139 499.2 1266 32.6
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.8e-126 458.4 1162 33.9
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 7.2e-112 409.8 647 43.7
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 4.5e-106 390.6 391 54.5
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.3e-78 298.5 519 38.0
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 3.4e-69 268.1 470 43.2
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 3.2e-67 261.5 268 54.9
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.7e-65 255.8 1253 25.2
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.2e-58 233.0 398 38.4
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 6.6e-57 227.3 262 52.7
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.9e-44 185.3 210 49.5
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 4.9e-36 157.9 91 81.3
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 8.4e-28 130.6 76 76.3
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 8.4e-28 130.6 108 56.5
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.1e-27 130.2 86 68.6
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 3.5e-26 125.2 112 56.2
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 6.1e-26 124.4 110 55.5
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 7.4e-24 117.5 160 49.4
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 7.4e-24 117.5 100 54.0
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 8.5e-20 104.0 82 59.8
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 8.8e-17 94.0 132 49.2
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 1.8e-09 69.7 82 42.7
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 9.7e-08 63.9 145 28.3
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 3.7e-07 62.0 74 43.2


User provided reference genes

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