Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20992 Trifolium pratense HOM05D021040 ORTHO05D015712 1.3e-87 326.2 156 100.0
TPR.G39142 Trifolium pratense HOM05D000003 ORTHO05D015712 9.7e-22 107.5 125 46.4
TPR.G1454 Trifolium pratense HOM05D021040 ORTHO05D015712 7.0e-20 101.3 119 41.2
TPR.G26335 Trifolium pratense HOM05D000007 ORTHO05D048973 4.4e-14 82.0 103 42.7
TPR.G25431 Trifolium pratense HOM05D000007 ORTHO05D000017 2.2e-13 79.7 90 45.6
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-11 71.2 119 30.3
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 1.0e-10 70.9 125 37.6
Atru.chr5.2695 Acer truncatum HOM05D000003 ORTHO05D000167 1.0e-10 70.9 118 34.7
Atru.chr2.1340 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-10 70.5 119 35.3
Atru.chr9.1299 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-10 69.7 119 35.3
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-10 68.6 118 33.1
CANSAT56G1970 Cannabis sativa HOM05D000003 ORTHO05D000167 6.5e-10 68.2 101 40.6
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 8.5e-10 67.8 142 33.8
Lj4g0023123 Lotus japonicus HOM05D000003 ORTHO05D000004 8.5e-10 67.8 116 30.2
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-09 67.4 119 29.4
Atru.chr3.2538 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-09 67.4 119 35.3
Medtr4g128150 Medicago truncatula HOM05D000283 ORTHO05D000358 1.1e-09 67.4 103 38.8
TPR.G35381 Trifolium pratense HOM05D021040 ORTHO05D015712 2.5e-09 66.2 100 35.0
Atru.chr3.1005 Acer truncatum HOM05D000003 ORTHO05D000167 3.2e-09 65.9 135 32.6
TPR.G35485 Trifolium pratense HOM05D039754 ORTHO05D015712 4.2e-09 65.5 90 37.8
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 5.5e-09 65.1 88 40.9
Atru.chr2.2033 Acer truncatum HOM05D000003 ORTHO05D000167 7.2e-09 64.7 123 27.6
Lj3g0008362 Lotus japonicus HOM05D000003 ORTHO05D000004 9.4e-09 64.3 117 29.1
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-08 63.2 119 27.7
Lj1g0015020 Lotus japonicus HOM05D000003 ORTHO05D001406 2.7e-08 62.8 112 31.2
Atru.chr6.787 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-08 62.4 118 33.1
Atru.chr11.265 Acer truncatum HOM05D000003 ORTHO05D000004 6.1e-08 61.6 118 33.1
CANSAT11G2679 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-08 61.6 132 34.8
Atru.chr6.748 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-08 61.2 118 33.1
TPR.G28061 Trifolium pratense HOM05D040511 ORTHO05D015712 8.0e-08 61.2 45 60.0
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-07 60.8 129 34.9
Atru.chr5.1665 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-07 60.5 119 32.8
Atru.chr6.1815 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-07 60.5 123 26.8
Medtr3g032750 Medicago truncatula HOM05D058659 ORTHO05D012297 1.4e-07 60.5 120 30.0
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 60.1 121 32.2
Atru.chr11.1423 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-07 60.1 120 31.7
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 60.1 119 31.9
Atru.chr2.1954 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-07 59.7 119 32.8
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 3.0e-07 59.3 120 28.3
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 3.0e-07 59.3 98 32.7
CANSAT01G1633 Cannabis sativa HOM05D000003 ORTHO05D000167 3.0e-07 59.3 119 32.8
CANSAT64G0231 Cannabis sativa HOM05D000003 ORTHO05D000167 3.0e-07 59.3 101 32.7
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 3.0e-07 59.3 121 36.4
Atru.chr1.1363 Acer truncatum HOM05D000003 ORTHO05D000004 6.7e-07 58.2 95 37.9
Atru.chr2.49 Acer truncatum HOM05D000003 ORTHO05D000167 6.7e-07 58.2 118 32.2
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 6.7e-07 58.2 119 30.3
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 8.8e-07 57.8 121 33.9
CANSAT21G2373 Cannabis sativa HOM05D000003 ORTHO05D000167 8.8e-07 57.8 122 31.1
FvH4_4g03242 Fragaria vesca HOM05D000118 ORTHO05D035766 8.8e-07 57.8 90 36.7
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 8.8e-07 57.8 127 29.9
Hund01260 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.8e-07 57.8 109 30.3
Atru.chr12.2264 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-06 57.4 120 29.2
Aa31LG10G16810 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.4 133 30.1
CiPaw.13G120800 Carya illinoinensis HOM05D000003 ORTHO05D013566 1.2e-06 57.4 109 33.9
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-06 57.0 107 32.7
Atru.chr2.1550 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-06 56.6 114 34.2
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-06 56.6 115 33.9
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 2.0e-06 56.6 97 32.0
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-06 56.6 104 31.7
Atru.chr1.1585 Acer truncatum HOM05D000003 ORTHO05D000167 2.6e-06 56.2 86 36.0
Atru.chr11.995 Acer truncatum HOM05D000003 ORTHO05D000167 2.6e-06 56.2 101 39.6
CiPaw.15G109000 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.6e-06 56.2 95 35.8
Lj4g0009536 Lotus japonicus HOM05D000003 ORTHO05D000004 2.6e-06 56.2 111 27.9
QL06p046108 Quercus lobata HOM05D028670 ORTHO05D000167 2.6e-06 56.2 119 29.4
Atru.chr10.149 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-06 55.8 118 31.4
CANSAT54G0125 Cannabis sativa HOM05D000003 ORTHO05D000167 3.3e-06 55.8 117 29.1
Atru.chr4.2367 Acer truncatum HOM05D000003 ORTHO05D000167 4.4e-06 55.5 116 30.2
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 4.4e-06 55.5 123 30.9
Atru.chr5.1667 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-06 55.1 126 31.0
CANSAT01G0940 Cannabis sativa HOM05D000003 ORTHO05D000167 5.7e-06 55.1 115 31.3
AUR62002858 Chenopodium quinoa HOM05D000286 ORTHO05D000170 5.7e-06 55.1 110 30.9
PSO170G6566 Papaver somniferum HOM05D000003 ORTHO05D001026 5.7e-06 55.1 117 33.3
CANSAT54G0363 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-06 54.7 93 36.6
CANSAT54G2323 Cannabis sativa HOM05D000003 ORTHO05D000167 7.5e-06 54.7 110 29.1
FvH4_4g18821 Fragaria vesca HOM05D000003 ORTHO05D000006 7.5e-06 54.7 86 38.4
Gorai.003G154500 Gossypium raimondii HOM05D012953 ORTHO05D013581 7.5e-06 54.7 120 29.2
Medtr6g048870 Medicago truncatula HOM05D002545 ORTHO05D002335 7.5e-06 54.7 50 48.0
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 9.7e-06 54.3 119 27.7
CANSAT25G2167 Cannabis sativa HOM05D000003 ORTHO05D000167 9.7e-06 54.3 117 28.2
CANSAT64G0505 Cannabis sativa HOM05D000003 ORTHO05D000167 9.7e-06 54.3 123 27.6
Lj5g0003062 Lotus japonicus HOM05D000003 ORTHO05D000004 9.7e-06 54.3 113 31.9
Medtr5g078690 Medicago truncatula HOM05D021040 ORTHO05D015712 9.7e-06 54.3 90 36.7
QL02p011410 Quercus lobata HOM05D000003 ORTHO05D000004 9.7e-06 54.3 95 34.7


User provided reference genes

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