Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 2.3e-235 818.5 418 100.0
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 2.1e-204 715.7 399 91.0
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 4.2e-197 691.4 413 86.2
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 5.0e-182 641.3 357 91.0
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 4.2e-181 638.3 386 84.7
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 4.2e-181 638.3 398 81.9
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.6e-180 636.3 418 78.5
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 7.5e-178 627.5 399 81.0
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 1.1e-173 613.6 392 82.1
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 2.1e-164 582.8 430 71.2
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.2e-148 530.4 409 67.0
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 3.7e-145 518.8 407 65.1
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.1e-144 517.3 407 64.4
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.9e-144 516.5 407 64.6
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.9e-144 516.5 416 63.7
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.4e-144 516.2 405 63.7
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 1.2e-143 513.8 406 64.8
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.6e-143 513.5 397 65.5
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 3.9e-142 508.8 414 63.3
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 5.6e-141 505.0 403 62.8
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 9.5e-141 504.2 406 64.5
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 1.2e-140 503.8 391 66.2
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 7.6e-138 494.6 410 61.2
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 7.6e-138 494.6 414 61.8
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 9.9e-138 494.2 409 62.1
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.2e-137 493.0 410 61.0
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 2.9e-137 492.7 393 63.9
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 2.9e-137 492.7 416 60.1
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 8.4e-137 491.1 393 63.4
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 4.1e-136 488.8 401 62.8
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.2e-135 487.3 396 61.9
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 3.5e-135 485.7 394 61.9
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.5e-135 485.7 396 61.6
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.9e-133 479.9 394 63.7
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.4e-130 469.2 402 61.2
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 3.4e-130 469.2 406 58.6
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.8e-130 468.4 393 61.3
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.4e-129 464.5 390 60.8
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.9e-128 463.4 378 62.2
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 7.1e-128 461.5 386 60.4
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.6e-127 460.3 388 61.1
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.6e-127 460.3 388 62.1
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 2.1e-127 459.9 386 61.9
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 2.1e-127 459.9 395 59.7
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 1.3e-126 457.2 415 57.8
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.3e-126 457.2 387 60.7
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.3e-126 456.4 385 61.3
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 3.0e-126 456.1 394 59.6
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 3.9e-126 455.7 388 60.3
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 1.5e-125 453.8 379 62.5
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.5e-125 453.8 447 55.7
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.3e-125 452.6 395 59.7
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 9.6e-125 451.1 387 59.9
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 2.4e-123 446.4 404 59.4
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 9.0e-123 444.5 395 58.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 9.0e-123 444.5 410 57.1
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 4.5e-122 442.2 408 59.1
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 5.1e-118 428.7 420 55.2
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.1e-117 427.6 385 56.6
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.1e-117 427.6 384 59.9
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.1e-117 427.6 395 54.4
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 1.5e-117 427.2 427 54.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.4e-117 424.9 387 56.6
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.6e-116 423.7 425 53.2
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.4e-115 419.9 396 55.3
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 1.2e-114 417.5 394 53.0
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 2.2e-113 413.3 418 54.8
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 4.2e-112 409.1 410 52.7
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 9.3e-112 407.9 398 56.5
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 1.2e-111 407.5 387 56.1
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.6e-111 407.1 414 53.6
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 5.1e-110 402.1 390 55.6
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 6.7e-110 401.7 387 56.1
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.1e-109 401.0 387 56.3
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.5e-109 399.8 333 62.8
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 4.3e-109 399.1 387 55.6
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.1e-108 396.7 387 55.3
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.1e-107 394.4 388 55.9
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 4.0e-107 392.5 386 56.0
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 7.6e-106 388.3 386 55.4
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 7.6e-106 388.3 386 55.7
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.0e-105 387.9 323 60.7
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 1.7e-105 387.1 386 55.2
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 2.2e-105 386.7 386 55.4
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.2e-105 386.7 324 60.8
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 2.5e-104 383.3 383 51.7
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 2.7e-103 379.8 386 54.7
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.6e-100 370.5 378 52.9
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 8.2e-100 368.2 376 50.8
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.9e-99 365.2 387 54.0
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 2.0e-98 363.6 383 54.0
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.5e-98 362.5 337 54.6
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.4e-96 357.5 338 54.1
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 4.6e-95 352.4 408 50.2
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 3.7e-92 342.8 409 46.9
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.4e-91 340.9 287 61.3
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.2e-87 327.8 334 55.4
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 7.7e-82 308.5 391 46.0
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.1e-80 304.7 369 49.6
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 8.0e-79 298.5 389 46.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 7.4e-77 292.0 323 49.2
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 7.0e-75 285.4 378 43.9
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.6e-74 283.5 313 50.8
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 4.0e-70 269.6 356 43.0
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.5e-64 251.1 387 39.5
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 9.8e-61 238.4 251 51.0
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 2.3e-57 227.3 419 34.6
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 2.8e-55 220.3 356 42.1
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.2e-50 204.9 337 35.6
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 4.3e-48 196.4 389 37.3
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.1e-43 181.8 188 51.6
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.9e-40 171.0 151 55.6
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.4e-38 164.9 196 51.5
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.7e-36 157.9 399 31.6
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 8.3e-36 155.6 186 52.2
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 8.3e-36 155.6 186 52.2
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.4e-35 154.8 179 47.5
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 3.2e-35 153.7 351 31.9
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 7.8e-34 149.1 111 63.1
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.0e-33 147.1 153 49.7
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 4.0e-30 136.7 222 38.7
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 9.9e-29 132.1 73 87.7
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 1.1e-24 118.6 100 62.0
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.1e-24 118.6 162 43.8
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.1e-23 114.4 123 42.3
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.6e-23 113.6 65 87.7
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 4.7e-23 113.2 87 71.3
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.7e-20 104.8 117 53.0
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.1e-16 92.0 75 60.0
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 7.3e-16 89.4 109 46.8
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.4e-14 85.1 77 58.4
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.4e-14 85.1 77 58.4
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 2.5e-08 64.3 61 52.5
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 5.6e-08 63.2 61 50.8
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 2.8e-07 60.8 42 76.2
Lalb_Chr06g0170821 Lupinus albus HOM05D003225 ORTHO05D003818 1.1e-06 58.9 362 25.7
Lalb_Chr06g0170851 Lupinus albus HOM05D003225 ORTHO05D003818 1.1e-06 58.9 362 25.7
Manes.12G039500 Manihot esculenta HOM05D003225 ORTHO05D003818 1.4e-06 58.5 364 24.2
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 6.9e-06 56.2 364 26.6


User provided reference genes

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