Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 2.9e-277 958.0 499 100.0
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.3e-237 826.2 485 86.4
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 5.9e-230 800.8 495 85.1
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 2.4e-215 752.3 502 78.1
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.5e-212 742.3 506 77.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 3.6e-203 711.8 503 73.2
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 2.0e-201 706.1 498 75.3
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.6e-201 705.7 501 75.2
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 4.1e-199 698.4 486 75.7
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 4.4e-185 651.7 512 68.0
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 5.1e-181 638.3 520 66.7
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.3e-173 612.8 491 65.8
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.6e-171 606.7 494 65.0
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.2e-169 600.5 491 63.1
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.0e-169 599.7 492 62.4
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.4e-169 599.0 495 62.8
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.2e-167 592.0 495 62.0
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.3e-165 586.3 492 61.6
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.3e-165 586.3 501 60.5
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 3.3e-164 582.4 443 70.4
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 5.6e-164 581.6 499 61.1
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 4.8e-163 578.6 492 60.8
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.1e-162 577.4 493 61.9
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 5.3e-162 575.1 492 62.0
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 9.0e-162 574.3 494 61.7
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 4.4e-161 572.0 498 60.8
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 4.4e-161 572.0 491 61.7
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.3e-160 570.5 494 60.5
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 3.8e-160 568.9 490 62.4
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 4.2e-159 565.5 489 63.0
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 5.4e-159 565.1 488 61.1
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 5.4e-159 565.1 491 60.7
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.4e-159 565.1 508 59.3
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 6.6e-157 558.1 495 60.0
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.5e-156 557.0 490 60.0
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 4.3e-156 555.4 491 59.1
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 9.6e-156 554.3 488 60.5
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.6e-155 553.5 482 61.0
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.1e-155 553.1 501 60.3
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 4.8e-155 552.0 488 61.1
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 4.0e-154 548.9 491 58.9
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 7.6e-153 544.7 491 58.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 1.3e-152 543.9 491 58.9
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.1e-151 540.8 504 57.1
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 3.2e-151 539.3 489 59.7
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 5.4e-151 538.5 494 57.3
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 5.4e-151 538.5 494 57.3
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 7.1e-151 538.1 486 59.7
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.2e-150 537.3 505 57.6
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.2e-150 537.3 492 57.7
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.1e-150 536.6 489 58.7
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.8e-149 533.5 496 58.3
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 3.9e-149 532.3 493 59.0
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 6.7e-149 531.6 505 57.6
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.1e-148 530.8 490 57.6
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.5e-148 530.4 498 57.6
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.5e-148 529.6 494 56.3
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.3e-148 529.3 494 56.3
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.3e-148 528.9 486 57.0
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.3e-148 528.9 486 57.0
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.3e-148 528.9 492 58.3
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 9.6e-148 527.7 489 57.3
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.3e-147 527.3 505 57.2
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 2.1e-147 526.6 498 56.2
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 4.8e-147 525.4 398 71.6
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 6.2e-147 525.0 534 55.6
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 3.1e-146 522.7 488 56.8
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 3.4e-145 519.2 495 57.2
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-144 517.3 488 55.7
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.2e-144 516.5 559 53.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.2e-143 512.3 499 56.1
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-142 510.8 458 59.2
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.2e-142 510.8 503 55.1
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-142 510.4 504 56.5
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.7e-142 509.6 492 57.5
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 3.5e-142 509.2 490 56.9
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 8.7e-141 504.6 502 55.4
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 7.4e-140 501.5 446 60.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 9.6e-140 501.1 505 54.7
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.1e-138 497.7 500 54.8
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 2.0e-137 493.4 434 62.0
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 2.9e-136 489.6 436 59.4
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.7e-134 483.0 420 60.2
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.5e-134 482.6 454 58.4
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.1e-132 477.6 439 58.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.9e-132 476.9 479 54.5
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 5.7e-132 475.3 490 53.9
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.1e-130 471.1 489 54.0
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 5.0e-128 462.2 434 55.5
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.4e-125 454.1 442 55.4
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.0e-125 453.0 384 63.3
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 4.3e-124 449.1 481 52.8
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.1e-122 443.0 484 52.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 5.9e-121 438.7 383 60.6
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 9.4e-119 431.4 386 57.8
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 8.2e-115 418.3 459 51.6
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 2.0e-113 413.7 347 61.1
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.7e-112 410.6 359 60.2
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 8.8e-109 398.3 388 55.2
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.7e-107 394.0 495 45.1
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.2e-107 391.7 495 48.7
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.4e-106 390.2 501 44.5
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 9.1e-106 388.3 350 59.1
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.9e-105 385.6 338 59.8
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.0e-96 358.2 393 52.4
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 6.5e-96 355.5 332 57.2
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.6e-94 350.9 488 44.9
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 2.7e-94 350.1 486 44.2
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.7e-94 349.4 374 52.9
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 6.8e-93 345.5 339 56.0
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.8e-93 345.1 271 64.2
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 4.4e-92 342.8 339 55.5
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 5.9e-89 332.4 487 43.9
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 9.5e-87 325.1 367 47.4
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 6.8e-85 318.9 582 37.3
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 9.8e-84 315.1 288 55.2
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 4.9e-83 312.8 289 56.7
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-77 294.3 242 61.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.0e-77 293.1 263 60.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-76 290.4 362 46.7
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.9e-71 274.2 345 47.8
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.3e-69 267.3 216 60.6
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 6.8e-69 265.8 234 60.3
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.2e-68 265.0 231 61.9
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 3.2e-66 256.9 236 55.9
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-63 248.1 171 69.0
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.7e-62 243.0 207 58.9
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-61 241.1 191 62.8
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 6.6e-56 222.6 219 53.9
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-55 221.5 368 40.5
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 8.9e-53 212.2 271 48.7
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 7.1e-50 202.6 412 37.4
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 5.1e-48 196.4 195 51.8
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 6.6e-48 196.1 206 53.9
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.5e-47 194.1 176 60.8
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 4.3e-47 193.4 157 65.0
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 6.2e-46 189.5 497 31.4
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 4.4e-44 183.3 136 66.2
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.1e-37 162.2 513 28.8
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.1e-33 147.9 200 46.5
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 1.3e-30 138.7 105 72.4
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.8e-29 134.8 481 28.5
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 6.9e-29 132.9 145 51.7
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.6e-28 131.0 176 46.0
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.0e-27 129.0 111 64.0
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-23 114.8 108 62.0
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 7.4e-23 112.8 108 61.1
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-22 112.1 108 60.2
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-19 101.7 65 64.6
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.9e-18 98.2 120 49.2
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-18 97.8 125 45.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 7.9e-17 92.8 64 76.6
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 2.5e-15 87.8 70 64.3
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.6e-12 77.8 84 45.2
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-11 75.5 85 51.8
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-11 74.7 79 59.5
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.5e-11 72.8 76 53.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 6.1e-09 66.6 132 35.6
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-08 64.7 78 50.0
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.1e-08 63.5 40 70.0
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 1.1e-07 62.4 38 78.9
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-07 62.0 81 46.9


User provided reference genes

Program Settings