Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.8e-101 372.5 177 100.0
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 3.0e-96 355.1 177 93.8
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 4.4e-95 351.3 176 94.3
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.6e-89 332.8 177 89.8
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 3.7e-86 321.6 176 85.2
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 8.6e-83 310.5 177 83.1
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 8.6e-83 310.5 177 83.1
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 8.6e-83 310.5 177 83.6
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 5.5e-82 307.8 164 87.8
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.1e-77 291.6 170 81.2
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.1e-77 291.6 170 81.2
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 5.9e-76 287.7 177 78.0
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 7.8e-76 287.3 168 80.4
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.7e-75 286.2 146 88.4
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.9e-74 282.7 180 76.1
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.9e-74 282.7 170 76.5
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 3.3e-74 282.0 163 81.0
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 4.3e-74 281.6 164 81.1
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 4.3e-74 281.6 179 76.5
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 4.3e-74 281.6 153 81.0
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 4.3e-74 281.6 182 75.3
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 5.6e-74 281.2 168 78.6
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 5.6e-74 281.2 183 76.0
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 7.3e-74 280.8 179 77.1
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 9.5e-74 280.4 169 78.1
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.2e-73 280.0 159 79.9
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.6e-73 279.6 153 80.4
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.6e-73 279.6 181 72.9
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 2.1e-73 279.3 163 80.4
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.1e-73 279.3 173 74.6
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.1e-73 279.3 150 82.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.8e-73 278.9 184 72.3
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.8e-73 278.9 179 76.0
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.8e-73 278.9 184 75.5
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 2.8e-73 278.9 162 79.0
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.8e-73 278.9 146 84.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.8e-73 278.9 170 77.1
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 6.1e-73 277.7 169 77.5
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 6.1e-73 277.7 178 75.3
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 6.1e-73 277.7 169 76.9
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 6.1e-73 277.7 149 83.9
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 8.0e-73 277.3 181 72.9
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.8e-72 276.2 158 80.4
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.8e-72 276.2 167 79.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.3e-72 275.8 184 72.3
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 2.3e-72 275.8 147 83.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 3.1e-72 275.4 150 80.7
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 3.1e-72 275.4 177 75.7
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 4.0e-72 275.0 149 83.2
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 5.2e-72 274.6 167 78.4
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.2e-72 274.6 167 78.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 5.2e-72 274.6 186 72.6
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 5.2e-72 274.6 175 72.6
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.8e-72 274.2 167 78.4
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 8.9e-72 273.9 158 79.1
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.2e-71 273.5 151 83.4
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 2.0e-71 272.7 153 83.0
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.6e-71 272.3 181 72.9
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 2.6e-71 272.3 149 83.2
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 3.4e-71 271.9 169 75.7
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 3.4e-71 271.9 169 76.9
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 3.4e-71 271.9 170 74.1
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.8e-71 271.2 167 77.8
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 5.8e-71 271.2 144 82.6
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.8e-71 271.2 143 83.9
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 7.5e-71 270.8 145 82.8
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.3e-70 270.0 175 72.0
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.3e-70 270.0 170 73.5
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.3e-70 270.0 182 73.1
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.3e-70 270.0 160 76.2
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.7e-70 269.6 151 82.8
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.7e-70 269.6 159 79.2
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 2.9e-70 268.9 151 82.8
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 3.7e-70 268.5 144 83.3
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 4.9e-70 268.1 151 82.1
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 6.4e-70 267.7 151 82.1
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 6.4e-70 267.7 151 82.1
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 6.4e-70 267.7 150 82.0
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.1e-69 266.9 171 73.7
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 1.9e-69 266.2 148 79.1
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 2.4e-69 265.8 161 76.4
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 9.2e-69 263.8 144 79.2
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.0e-68 262.7 179 72.1
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.9e-67 258.5 170 70.0
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 8.6e-67 257.3 150 76.0
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-65 253.4 146 78.1
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.6e-65 251.9 173 68.2
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.1e-64 250.4 142 76.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.5e-63 246.5 142 73.9
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.4e-61 239.2 126 86.5
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.6e-60 236.5 159 73.6
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.1e-60 236.1 162 75.9
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.7e-59 233.0 127 81.9
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 6.6e-59 231.1 132 82.6
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.1e-58 230.3 140 76.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 1.5e-58 229.9 124 83.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 5.6e-58 228.0 118 85.6
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 9.5e-58 227.3 139 76.3
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.1e-57 226.1 122 82.8
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 8.1e-57 224.2 140 75.7
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 5.2e-56 221.5 129 80.6
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.2e-55 220.3 126 83.3
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.6e-55 219.2 143 76.2
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 2.6e-55 219.2 160 67.5
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.3e-54 216.9 140 69.3
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.7e-54 216.5 148 70.3
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.4e-53 213.4 165 63.0
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.4e-53 213.4 120 80.0
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.0e-51 207.2 150 70.0
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.4e-48 196.1 99 87.9
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.0e-44 181.4 162 53.1
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.1e-42 177.2 92 88.0
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.5e-42 176.0 149 53.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.3e-42 175.6 95 87.4
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.3e-42 174.5 153 55.6
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.7e-38 163.3 148 52.7
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.2e-38 162.9 158 51.3
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 4.9e-38 161.8 120 65.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 6.4e-38 161.4 94 76.6
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 3.2e-37 159.1 184 46.2
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.5e-34 150.2 140 49.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 9.0e-32 141.0 85 74.1
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.3e-30 137.1 173 42.2
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 2.2e-30 136.3 150 48.7
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.5e-28 129.0 72 83.3
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 7.4e-26 121.3 70 81.4
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 3.7e-25 119.0 59 86.4
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 6.2e-25 118.2 133 45.9
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 7.6e-23 111.3 120 49.2
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.4e-21 107.1 53 86.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.1e-20 103.2 182 39.0
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 2.6e-15 86.3 74 55.4
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 1.8e-11 73.6 70 57.1
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 3.0e-11 72.8 141 34.0
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 9.7e-10 67.8 82 47.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 2.4e-08 63.2 31 83.9
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 9.0e-08 61.2 92 33.7
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 1.0e-06 57.8 158 28.5
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 2.9e-06 56.2 48 54.2


User provided reference genes

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