Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 6.3e-73 277.3 139 100.0
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 4.1e-72 274.6 139 98.6
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 2.5e-61 238.8 144 84.7
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 3.6e-60 235.0 144 82.6
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 4.7e-60 234.6 140 87.9
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 3.0e-59 231.9 143 81.8
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 8.8e-59 230.3 143 81.1
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 4.4e-58 228.0 143 81.1
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.3e-57 226.5 146 76.7
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 2.8e-57 225.3 143 81.8
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 3.7e-57 224.9 146 76.0
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 4.9e-57 224.6 139 78.4
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 6.3e-57 224.2 141 80.1
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 2.4e-56 222.2 145 80.7
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 5.4e-56 221.1 143 78.3
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 7.0e-56 220.7 141 79.4
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 2.0e-55 219.2 142 78.2
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 4.5e-55 218.0 151 76.2
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 1.0e-54 216.9 145 77.2
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.0e-54 216.9 143 76.2
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.7e-54 216.1 144 77.1
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.7e-54 216.1 142 76.8
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 3.8e-54 214.9 144 75.7
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 5.0e-54 214.5 145 74.5
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 6.6e-54 214.2 144 75.0
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 6.6e-54 214.2 144 75.0
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 6.6e-54 214.2 143 77.6
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 8.6e-54 213.8 144 79.2
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 8.6e-54 213.8 145 74.5
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 8.6e-54 213.8 144 74.3
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 1.1e-53 213.4 143 75.5
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.5e-53 213.0 145 77.9
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 1.9e-53 212.6 141 79.4
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 1.9e-53 212.6 145 75.9
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 2.5e-53 212.2 144 77.8
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 3.3e-53 211.8 147 75.5
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 4.3e-53 211.5 170 65.3
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 4.3e-53 211.5 148 72.3
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 4.3e-53 211.5 148 72.3
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 4.3e-53 211.5 148 72.3
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 4.3e-53 211.5 144 77.1
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 4.3e-53 211.5 144 77.1
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 5.6e-53 211.1 145 75.2
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 7.2e-53 210.7 140 76.4
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 9.5e-53 210.3 153 73.9
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 9.5e-53 210.3 145 75.9
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 1.2e-52 209.9 145 75.9
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.2e-52 209.9 143 78.3
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.2e-52 209.9 144 72.9
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.6e-52 209.5 144 72.9
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 2.1e-52 209.1 141 75.9
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.1e-52 209.1 142 75.4
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 2.8e-52 208.8 142 76.8
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 2.8e-52 208.8 143 75.5
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 2.8e-52 208.8 139 75.5
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 2.8e-52 208.8 139 75.5
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 3.6e-52 208.4 147 71.4
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 3.6e-52 208.4 147 72.1
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 4.7e-52 208.0 144 72.9
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 6.1e-52 207.6 146 74.0
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 6.1e-52 207.6 144 73.6
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 6.1e-52 207.6 146 71.9
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 8.0e-52 207.2 142 72.5
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 8.0e-52 207.2 140 74.3
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 8.0e-52 207.2 144 74.3
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 8.0e-52 207.2 144 75.0
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 8.0e-52 207.2 145 73.8
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.0e-51 206.8 145 73.8
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.4e-51 206.5 144 74.3
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.8e-51 206.1 146 71.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 2.3e-51 205.7 141 75.2
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 3.0e-51 205.3 132 78.8
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 3.0e-51 205.3 146 71.9
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 3.0e-51 205.3 141 74.5
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 3.0e-51 205.3 148 73.0
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 4.0e-51 204.9 143 74.1
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 4.0e-51 204.9 128 78.9
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 5.2e-51 204.5 148 72.3
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 6.8e-51 204.1 144 72.2
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.2e-50 203.4 144 73.6
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.2e-50 203.4 144 73.6
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.5e-50 203.0 145 71.0
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.5e-50 203.0 144 73.6
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.5e-50 203.0 145 71.0
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 2.0e-50 202.6 142 75.4
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 2.0e-50 202.6 148 71.6
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.0e-50 202.6 140 75.0
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.6e-50 202.2 144 72.9
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 2.6e-50 202.2 110 89.1
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 3.4e-50 201.8 143 73.4
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 5.7e-50 201.1 142 73.2
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 7.5e-50 200.7 147 70.7
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 9.8e-50 200.3 132 78.8
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 9.8e-50 200.3 146 74.7
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 9.8e-50 200.3 143 73.4
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.3e-49 199.9 137 74.5
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.3e-49 199.9 145 71.0
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 2.9e-49 198.7 145 71.0
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.7e-49 198.4 141 75.2
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 4.9e-49 198.0 165 66.1
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 4.9e-49 198.0 146 68.5
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.1e-48 196.8 141 73.8
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.4e-48 196.4 141 72.3
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 1.8e-48 196.1 141 74.5
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.2e-48 195.3 146 69.2
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.2e-48 195.3 141 73.0
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 3.2e-48 195.3 140 71.4
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 7.0e-48 194.1 145 70.3
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.0e-47 192.6 110 83.6
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 2.0e-47 192.6 138 71.7
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.7e-47 192.2 147 69.4
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 2.7e-47 192.2 147 69.4
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 4.6e-47 191.4 134 73.1
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.9e-47 191.0 138 73.2
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.0e-46 190.3 147 68.7
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.0e-46 190.3 116 81.0
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 8.6e-46 187.2 114 78.1
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.1e-45 186.8 221 52.9
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.5e-45 186.4 115 80.9
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 1.9e-45 186.0 143 68.5
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.7e-41 171.8 204 50.5
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 6.4e-41 171.0 92 90.2
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 8.3e-41 170.6 172 55.2
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 5.4e-40 167.9 91 89.0
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 7.0e-40 167.5 90 90.0
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 3.5e-39 165.2 108 77.8
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 7.8e-39 164.1 105 78.1
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 7.8e-39 164.1 88 88.6
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 2.6e-34 149.1 109 68.8
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 5.4e-32 141.4 137 54.7
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 5.1e-30 134.8 131 55.0
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 3.3e-29 132.1 98 69.4
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 3.6e-28 128.6 112 60.7
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.8e-27 124.4 144 52.8
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 1.5e-26 123.2 108 58.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 1.1e-24 117.1 63 92.1
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.0e-22 109.0 60 88.3
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 4.3e-21 105.1 89 60.7
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 6.2e-20 101.3 86 55.8
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 8.1e-20 100.9 89 60.7
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 5.4e-16 88.2 112 46.4
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.7e-14 83.2 113 44.2
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 3.0e-14 82.4 104 40.4
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 9.6e-13 77.4 63 60.3
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 3.4e-10 68.9 48 70.8
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 4.9e-09 65.1 35 85.7
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 2.1e-07 59.7 104 39.4
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 2.7e-07 59.3 104 37.5
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 1.0e-06 57.4 43 67.4
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.0e-06 57.4 43 67.4
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.3e-06 57.0 60 51.7
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 3.9e-06 55.5 37 70.3
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 6.6e-06 54.7 64 48.4


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