Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20932 Trifolium pratense HOM05D001578 ORTHO05D001207 2.3e-99 365.5 183 100.0
TPR.G25399 Trifolium pratense HOM05D001578 ORTHO05D001207 3.8e-49 198.7 181 63.5
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 5.8e-26 121.7 185 42.7
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 2.4e-24 116.3 182 42.9
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 1.2e-23 114.0 183 43.2
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.3e-22 110.5 185 43.2
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.1e-21 107.5 185 42.7
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.1e-21 107.5 185 42.7
Psat0s2823g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.9e-21 106.7 186 43.5
Psat0s4829g0040 Pisum sativum HOM05D001578 ORTHO05D001207 4.3e-21 105.5 185 39.5
Psat4g021360 Pisum sativum HOM05D001578 ORTHO05D001207 5.6e-21 105.1 184 38.6
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 6.2e-20 101.7 187 40.1
Medtr4g122780 Medicago truncatula HOM05D001578 ORTHO05D001207 1.4e-19 100.5 151 47.7
Psat0s740g0200 Pisum sativum HOM05D001578 ORTHO05D001207 2.6e-18 96.3 184 36.4
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 1.0e-17 94.4 184 37.5
Psat0s740g0240 Pisum sativum HOM05D001578 ORTHO05D001207 2.2e-17 93.2 184 35.9
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.9e-17 92.8 183 38.8
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 6.5e-17 91.7 182 37.9
Psat4g021520 Pisum sativum HOM05D001578 ORTHO05D001207 6.5e-17 91.7 184 38.6
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 6.5e-17 91.7 186 37.6
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 1.9e-16 90.1 179 36.9
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.9e-16 90.1 182 35.7
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 2.5e-16 89.7 181 37.0
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 3.2e-16 89.4 189 36.5
Psat0s2823g0080 Pisum sativum HOM05D001578 ORTHO05D001207 3.2e-16 89.4 185 36.2
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 1.6e-15 87.0 184 37.5
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.7e-15 86.3 185 36.2
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 2.7e-15 86.3 185 35.7
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 3.5e-15 85.9 181 36.5
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 6.0e-15 85.1 193 36.8
Psat0s2734g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.3e-14 84.0 186 37.6
Psat0s2818g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.8e-14 83.6 181 35.9
VMungo1215G1199 Vigna mungo HOM05D001578 ORTHO05D001207 2.3e-14 83.2 182 33.5
Lalb_Chr07g0181931 Lupinus albus HOM05D001578 ORTHO05D001207 3.0e-14 82.8 176 36.9
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 3.9e-14 82.4 184 35.3
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 3.9e-14 82.4 179 35.2
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 5.1e-14 82.0 179 35.2
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 6.7e-14 81.6 153 39.9
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 1.1e-13 80.9 184 34.8
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 1.9e-13 80.1 182 35.2
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 2.5e-13 79.7 183 36.1
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 5.7e-13 78.6 182 37.4
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 5.7e-13 78.6 153 37.3
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 7.4e-13 78.2 184 35.3
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 9.7e-13 77.8 152 36.8
Glyma.20G029500 Glycine max HOM05D001578 ORTHO05D001207 2.8e-12 76.3 179 33.5
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.8e-12 76.3 179 34.6
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 2.8e-12 76.3 181 36.5
Medtr4g122760 Medicago truncatula HOM05D001578 ORTHO05D001207 3.7e-12 75.9 182 33.5
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.8e-12 75.5 177 33.3
Glyma.20G029200 Glycine max HOM05D001578 ORTHO05D001207 8.2e-12 74.7 179 33.0
Glyma.20G028700 Glycine max HOM05D001578 ORTHO05D001207 5.3e-11 72.0 156 32.1
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 6.9e-11 71.6 176 34.1
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 6.9e-11 71.6 176 34.1
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 6.9e-11 71.6 180 32.8
Manes.15G098100 Manihot esculenta HOM05D001578 ORTHO05D001207 9.0e-11 71.2 152 33.6
FAN07G2152 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.2e-10 70.9 176 34.1
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.2e-10 70.9 178 32.0
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 1.2e-10 70.9 180 32.8
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 1.5e-10 70.5 194 34.0
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 1.5e-10 70.5 182 32.4
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 2.0e-10 70.1 152 32.2
Glyma.20G029000 Glycine max HOM05D001578 ORTHO05D001207 2.6e-10 69.7 156 31.4
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 2.6e-10 69.7 176 36.4
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 3.4e-10 69.3 156 33.3
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 3.4e-10 69.3 183 33.9
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 4.5e-10 68.9 183 33.9
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 4.5e-10 68.9 185 31.9
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 4.5e-10 68.9 151 37.1
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 4.5e-10 68.9 182 33.0
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 4.5e-10 68.9 149 36.2
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 7.7e-10 68.2 155 33.5
Lj4g0019348 Lotus japonicus HOM05D001578 ORTHO05D001207 7.7e-10 68.2 173 34.7
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 1.0e-09 67.8 176 34.7
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 1.3e-09 67.4 170 31.8
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 1.3e-09 67.4 183 29.0
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.2e-09 66.6 179 30.7
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 2.2e-09 66.6 179 31.3
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 2.9e-09 66.2 159 31.4
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 2.9e-09 66.2 152 32.9
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 2.9e-09 66.2 156 32.1
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 6.5e-09 65.1 179 30.2
Migut.N00031 Erythranthe guttata HOM05D001578 ORTHO05D001207 6.5e-09 65.1 180 31.7
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 6.5e-09 65.1 153 33.3
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.1e-08 64.3 160 30.0
Lalb_Chr12g0200771 Lupinus albus HOM05D001578 ORTHO05D001207 1.1e-08 64.3 176 33.0
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 1.1e-08 64.3 176 35.2
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.4e-08 63.9 185 30.3
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.4e-08 63.9 185 30.3
RcHm_v2.0_Chr4g0432401 Rosa chinensis HOM05D001578 ORTHO05D001207 1.4e-08 63.9 153 35.9
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.9e-08 63.5 187 29.4
FvH4_6g33790 Fragaria vesca HOM05D001578 ORTHO05D001207 1.9e-08 63.5 157 33.8
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.9e-08 63.5 186 31.2
Lalb_Chr20g0117771 Lupinus albus HOM05D001578 ORTHO05D001207 2.5e-08 63.2 184 31.0
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 3.2e-08 62.8 154 31.8
Lj3P834T42 Lonicera japonica HOM05D001578 ORTHO05D001207 3.2e-08 62.8 157 34.4
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 3.2e-08 62.8 151 33.1
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 3.2e-08 62.8 151 33.1
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 3.2e-08 62.8 176 31.2
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 3.2e-08 62.8 151 33.1
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 4.2e-08 62.4 181 30.4
RcHm_v2.0_Chr3g0482891 Rosa chinensis HOM05D001578 ORTHO05D001207 4.2e-08 62.4 175 28.6
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 5.5e-08 62.0 185 29.2
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 5.5e-08 62.0 185 29.2
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 5.5e-08 62.0 188 28.2
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 5.5e-08 62.0 179 30.2
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 5.5e-08 62.0 183 28.4
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 7.2e-08 61.6 187 30.5
FAN18G0021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 7.2e-08 61.6 161 32.9
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 7.2e-08 61.6 182 29.7
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 7.2e-08 61.6 158 34.2
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 7.2e-08 61.6 148 33.8
Sabra08G0077400 Salix brachista HOM05D001578 ORTHO05D001207 7.2e-08 61.6 178 30.3
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 7.2e-08 61.6 183 27.3
FvH4_4g20510 Fragaria vesca HOM05D001578 ORTHO05D001207 9.4e-08 61.2 158 33.5
Phvul.006G119800 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 9.4e-08 61.2 184 29.9
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 9.4e-08 61.2 189 29.6
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 1.2e-07 60.8 182 29.1
TWI53G0804 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.2e-07 60.8 176 30.7
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 1.6e-07 60.5 159 30.8
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.6e-07 60.5 183 26.2
FvH4_4g20430 Fragaria vesca HOM05D001578 ORTHO05D001207 2.1e-07 60.1 157 31.2
FvH4_5g04330 Fragaria vesca HOM05D001578 ORTHO05D001207 2.7e-07 59.7 157 33.1
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.7e-07 59.7 176 29.0
Lj3P834T43 Lonicera japonica HOM05D001578 ORTHO05D001207 2.7e-07 59.7 157 33.1
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 3.6e-07 59.3 187 27.3
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 3.6e-07 59.3 185 28.1
CiPaw.01G135800 Carya illinoinensis HOM05D001578 ORTHO05D001207 6.1e-07 58.5 181 31.5
SGA_v2.0_scaffold246G44798 Striga asiatica HOM05D001578 ORTHO05D001207 6.1e-07 58.5 181 27.1
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 6.1e-07 58.5 181 27.6
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 7.9e-07 58.2 155 31.6
Manes.02G201700 Manihot esculenta HOM05D001578 ORTHO05D001207 7.9e-07 58.2 154 30.5
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 1.0e-06 57.8 188 32.4
Glyma.09G033700 Glycine max HOM05D001578 ORTHO05D001207 1.0e-06 57.8 159 28.3
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 1.0e-06 57.8 177 30.5
RcHm_v2.0_Chr4g0425961 Rosa chinensis HOM05D001578 ORTHO05D001207 1.4e-06 57.4 154 32.5
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 1.8e-06 57.0 180 28.9
Nitab4.5_0000651g0280 Nicotiana tabacum HOM05D001578 ORTHO05D001207 1.8e-06 57.0 170 30.0
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 1.8e-06 57.0 164 27.4
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 2.3e-06 56.6 157 31.2
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 3.9e-06 55.8 186 28.0
Nitab4.5_0002150g0010 Nicotiana tabacum HOM05D001578 ORTHO05D001207 3.9e-06 55.8 162 29.0
arahy.Tifrunner.gnm1.ann1.T9CDYU Arachis hypogaea HOM05D001578 ORTHO05D001207 5.1e-06 55.5 174 29.9
Migut.N00030 Erythranthe guttata HOM05D001578 ORTHO05D001207 5.1e-06 55.5 151 30.5
Lsat_1_v5_gn_7_59360 Lactuca sativa HOM05D001578 ORTHO05D001207 5.1e-06 55.5 157 29.3
Lsat_1_v5_gn_7_59420 Lactuca sativa HOM05D001578 ORTHO05D001207 5.1e-06 55.5 157 29.3
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 5.1e-06 55.5 179 27.9
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 6.7e-06 55.1 152 28.3
FAN07G1428 Fragaria x ananassa HOM05D001578 ORTHO05D001207 6.7e-06 55.1 164 30.5
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 6.7e-06 55.1 186 31.7
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 6.7e-06 55.1 186 31.7
HanXRQChr13g0395201 Helianthus annuus HOM05D001578 ORTHO05D001207 6.7e-06 55.1 155 29.0
Lsat_1_v5_gn_5_185420 Lactuca sativa HOM05D001578 ORTHO05D001207 6.7e-06 55.1 155 29.0
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 8.8e-06 54.7 153 30.7
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 8.8e-06 54.7 159 30.8
Duzib151G0004 Durio zibethinus HOM05D001578 ORTHO05D001207 8.8e-06 54.7 178 29.8
Thhalv10021672m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 8.8e-06 54.7 153 30.7
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 8.8e-06 54.7 188 26.1
PGR031G2424 Punica granatum HOM05D001578 ORTHO05D001207 8.8e-06 54.7 184 31.5
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 8.8e-06 54.7 176 29.5


User provided reference genes

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