Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20923 Trifolium pratense HOM05D002753 ORTHO05D003097 1.8e-21 105.1 59 100.0
TPR.G39308 Trifolium pratense HOM05D002753 ORTHO05D003097 1.4e-18 95.5 56 85.7
Ca_18410_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 2.1e-17 91.7 57 82.5
Psat7g103160 Pisum sativum HOM05D002753 ORTHO05D003097 2.1e-17 91.7 57 82.5
Medtr1g053780 Medicago truncatula HOM05D002753 ORTHO05D003097 7.9e-17 89.7 57 75.4
Medtr4g092970 Medicago truncatula HOM05D002753 ORTHO05D003097 7.9e-17 89.7 57 75.4
TPR.G25705 Trifolium pratense HOM05D002753 ORTHO05D003467 7.9e-17 89.7 59 86.4
Dinv08972 Davidia involucrata HOM05D002753 ORTHO05D003097 1.0e-16 89.4 54 79.6
Ciclev10029816m.g Citrus clementina HOM05D002753 ORTHO05D003097 1.4e-16 89.0 54 77.8
Lj4g0007428 Lotus japonicus HOM05D002753 ORTHO05D003097 1.8e-16 88.6 54 79.6
Lj4g0024024 Lotus japonicus HOM05D002753 ORTHO05D003097 1.8e-16 88.6 54 79.6
LjContig00139g0003532 Lotus japonicus HOM05D002753 ORTHO05D003097 1.8e-16 88.6 54 79.6
LjContig00139g0010456 Lotus japonicus HOM05D002753 ORTHO05D003097 1.8e-16 88.6 54 79.6
LjContig00139g0015911 Lotus japonicus HOM05D002753 ORTHO05D003097 1.8e-16 88.6 54 79.6
Lalb_Chr16g0383061 Lupinus albus HOM05D002753 ORTHO05D003097 1.8e-16 88.6 54 79.6
Thecc.02G125700 Theobroma cacao HOM05D002753 ORTHO05D003097 1.8e-16 88.6 53 81.1
TAR376G1183 Trochodendron aralioides HOM05D002753 ORTHO05D003097 1.8e-16 88.6 54 77.8
CSS0000609 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.0e-16 87.8 54 75.9
CSS0037026 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 3.0e-16 87.8 54 75.9
QL11p026419 Quercus lobata HOM05D002753 ORTHO05D003097 3.0e-16 87.8 54 77.8
TWI23G0822 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 3.9e-16 87.4 54 75.9
GSVIVG01038511001 Vitis vinifera HOM05D002753 ORTHO05D003097 3.9e-16 87.4 54 77.8
Rhsim05G0096700 Rhododendron simsii HOM05D002753 ORTHO05D003097 6.7e-16 86.7 54 75.9
Glyma.08G065200 Glycine max HOM05D002753 ORTHO05D003097 8.8e-16 86.3 54 75.9
Sc08g0004090 Simmondsia chinensis HOM05D002753 ORTHO05D003097 8.8e-16 86.3 54 74.1
Duzib132G0158 Durio zibethinus HOM05D002753 ORTHO05D003097 1.1e-15 85.9 54 75.9
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.5e-15 85.5 54 74.1
Manes.10G093500 Manihot esculenta HOM05D002753 ORTHO05D003097 1.9e-15 85.1 57 71.9
Prupe.8G074100 Prunus persica HOM05D002753 ORTHO05D003097 1.9e-15 85.1 54 75.9
Sabra16G0177700 Salix brachista HOM05D002753 ORTHO05D003097 1.9e-15 85.1 54 75.9
Carub.0003s2766 Capsella rubella HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 87.0
Nn2g15300 Nelumbo nucifera HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 75.9
PSO339G2269 Papaver somniferum HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 72.2
PSO339G4496 Papaver somniferum HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 72.2
Phvul.002G215600 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 74.1
Potri.001G285000 Populus trichocarpa HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 75.9
SGA_v2.0_scaffold32G12940 Striga asiatica HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 72.2
vmacro19599 Vaccinium macrocarpon HOM05D002753 ORTHO05D003097 2.5e-15 84.7 54 72.2
Aqoxy6G00650 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 3.3e-15 84.3 54 74.1
SalBow6G5254 Salvia bowleyana HOM05D002753 ORTHO05D003097 3.3e-15 84.3 54 70.4
CSS0028145 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 72.2
Migut.B00526 Erythranthe guttata HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 74.1
FvH4_1g23320 Fragaria vesca HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 75.9
FAN19G2857 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 75.9
FAN23G1321 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 75.9
FAN26G3199 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 75.9
FAN28G0139 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 75.9
Lj5A226G56 Lonicera japonica HOM05D002753 ORTHO05D003097 4.3e-15 84.0 56 75.0
MBI16_g10443_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 72.2
RcHm_v2.0_Chr2g0118131 Rosa chinensis HOM05D002753 ORTHO05D003097 4.3e-15 84.0 54 75.9
BcaB05g21545 Brassica carinata HOM05D002753 ORTHO05D003097 5.7e-15 83.6 54 83.3
AL6G19990 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 7.4e-15 83.2 54 81.5
Thhalv10013860m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 7.4e-15 83.2 54 85.2
MD10G1056400 Malus domestica HOM05D002753 ORTHO05D003097 7.4e-15 83.2 54 72.2
Atru.chr6.1395 Acer truncatum HOM05D002753 ORTHO05D003097 9.7e-15 82.8 53 75.5
MSTRG.16630 Avicennia marina HOM05D002753 ORTHO05D003097 9.7e-15 82.8 54 74.1
RcHm_v2.0_Chr2g0118161 Rosa chinensis HOM05D002753 ORTHO05D003097 9.7e-15 82.8 54 72.2
VMungo0251G0167 Vigna mungo HOM05D002753 ORTHO05D003097 9.7e-15 82.8 54 70.4
Atru.chr6.1339 Acer truncatum HOM05D002753 ORTHO05D003097 1.3e-14 82.4 53 73.6
Nitab4.5_0000935g0210 Nicotiana tabacum HOM05D002753 ORTHO05D003097 1.3e-14 82.4 54 72.2
Nitab4.5_0005163g0040 Nicotiana tabacum HOM05D002753 ORTHO05D003097 1.3e-14 82.4 54 72.2
PSO801G0587 Papaver somniferum HOM05D002753 ORTHO05D003097 1.3e-14 82.4 54 70.4
Hund00392 Selenicereus undatus HOM05D002753 ORTHO05D003097 1.3e-14 82.4 54 70.4
CAN.G504.39 Capsicum annuum HOM05D002753 ORTHO05D003097 1.7e-14 82.0 54 70.4
ClCG09G016500 Citrullus lanatus HOM05D002753 ORTHO05D003097 1.7e-14 82.0 53 71.7
Sopen01g048580 Solanum pennellii HOM05D002753 ORTHO05D003097 2.2e-14 81.6 53 73.6
CsaV3_7G007440 Cucumis sativus L. HOM05D002753 ORTHO05D003097 2.8e-14 81.3 53 71.7
Aa31LG3G17470 Aethionema arabicum HOM05D002753 ORTHO05D003097 3.7e-14 80.9 54 72.2
BcaC03g13263 Brassica carinata HOM05D002753 ORTHO05D003097 3.7e-14 80.9 53 71.7
A02p00030 Brassica napus HOM05D002753 ORTHO05D003097 3.7e-14 80.9 53 81.1
C02p03930 Brassica napus HOM05D002753 ORTHO05D003097 3.7e-14 80.9 53 71.7
BolC2t06356H Brassica oleracea HOM05D002753 ORTHO05D003097 3.7e-14 80.9 53 71.7
BraA02t04986Z Brassica rapa HOM05D002753 ORTHO05D003097 3.7e-14 80.9 53 71.7
PGR142G3779 Punica granatum HOM05D002753 ORTHO05D003097 3.7e-14 80.9 54 72.2
Sp6g33790 Schrenkiella parvula HOM05D002753 ORTHO05D003097 4.8e-14 80.5 54 72.2
AT5G09580 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 6.3e-14 80.1 54 79.6
DCAR_001841 Daucus carota HOM05D002753 ORTHO05D003097 6.3e-14 80.1 54 70.4
Eucgr.I02590 Eucalyptus grandis HOM05D002753 ORTHO05D003097 6.3e-14 80.1 54 70.4
AUR62027087 Chenopodium quinoa HOM05D002753 ORTHO05D003097 8.2e-14 79.7 54 66.7
AUR62030927 Chenopodium quinoa HOM05D002753 ORTHO05D003097 8.2e-14 79.7 54 66.7
MELO3C018558.2 Cucumis melo HOM05D002753 ORTHO05D003097 8.2e-14 79.7 53 69.8
Solyc01g106190.4 Solanum lycopersicum HOM05D002753 ORTHO05D003097 8.2e-14 79.7 53 71.7
Ah.01g024130 Amaranthus hybridus HOM05D002753 ORTHO05D003097 1.1e-13 79.3 53 67.9
Sed0024829 Sechium edule HOM05D002753 ORTHO05D003097 1.1e-13 79.3 53 67.9
Cc02_g20650 Coffea canephora HOM05D002753 ORTHO05D003097 1.8e-13 78.6 55 67.3
PGR142G0966 Punica granatum HOM05D002753 ORTHO05D003097 2.4e-13 78.2 54 70.4
CSS0023717 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 4.1e-13 77.4 54 66.7
EL10Ac9g22119 Beta vulgaris HOM05D002753 ORTHO05D003097 1.5e-12 75.5 53 64.2
ECA234G0873 Erigeron canadensis HOM05D002753 ORTHO05D003097 2.0e-12 75.1 54 64.8
CANSAT54G2703 Cannabis sativa HOM05D002753 ORTHO05D003097 2.6e-12 74.7 56 73.2
GSVIVG01007853001 Vitis vinifera HOM05D002753 ORTHO05D003097 3.4e-12 74.3 54 66.7
Gohir.A13G049800 Gossypium hirsutum HOM05D002753 ORTHO05D003097 5.9e-12 73.6 55 69.1
Gorai.013G053900 Gossypium raimondii HOM05D002753 ORTHO05D003097 7.7e-12 73.2 55 69.1
HanXRQChr10g0291201 Helianthus annuus HOM05D002753 ORTHO05D003097 7.7e-12 73.2 55 67.3
Gohir.D13G048300 Gossypium hirsutum HOM05D002753 ORTHO05D003097 1.0e-11 72.8 55 69.1
SHI53683 Sapria himalayana HOM05D002753 ORTHO05D003097 1.0e-11 72.8 67 55.2
Lsat_1_v5_gn_5_111001 Lactuca sativa HOM05D002753 ORTHO05D003097 1.7e-11 72.0 52 65.4
Os11g0167200 Oryza sativa ssp. japonica HOM05D002753 ORTHO05D003097 3.8e-11 70.9 54 57.4
Rhsim05G0097100 Rhododendron simsii HOM05D002753 ORTHO05D003097 3.8e-11 70.9 80 50.0
unitig_0.g790 Utricularia gibba HOM05D002753 ORTHO05D003097 1.1e-10 69.3 53 60.4
Zm00001eb108150 Zea mays HOM05D002753 ORTHO05D003097 4.2e-10 67.4 53 56.6
Zm00001eb166050 Zea mays HOM05D002753 ORTHO05D003097 4.2e-10 67.4 53 56.6
Zm00001eb202470 Zea mays HOM05D002753 ORTHO05D003097 4.2e-10 67.4 53 56.6
Zm00001eb248430 Zea mays HOM05D002753 ORTHO05D003097 4.2e-10 67.4 53 56.6
Zm00001eb292560 Zea mays HOM05D002753 ORTHO05D003097 4.2e-10 67.4 53 56.6
Zm00001eb250270 Zea mays HOM05D002753 ORTHO05D003097 5.5e-10 67.0 53 56.6
CSS0003377 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 2.3e-08 61.6 56 57.1
Actinidia28019 Actinidia chinensis HOM05D002753 ORTHO05D003097 3.3e-07 57.8 47 63.8
Actinidia28017 Actinidia chinensis HOM05D002753 ORTHO05D003097 6.3e-06 53.5 34 79.4


User provided reference genes

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