Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20896 Trifolium pratense HOM05D001813 ORTHO05D008124 7.1e-22 106.3 51 100.0
TPR.G19398 Trifolium pratense HOM05D001813 ORTHO05D008124 2.5e-11 71.2 74 56.8
Psat5g109280 Pisum sativum HOM05D001813 ORTHO05D008124 2.1e-10 68.2 76 53.9
AT5G21060 Arabidopsis thaliana HOM05D001813 ORTHO05D008124 3.6e-10 67.4 72 55.6
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea HOM05D001813 ORTHO05D008124 8.1e-10 66.2 76 51.3
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea HOM05D001813 ORTHO05D008124 8.1e-10 66.2 76 51.3
Eucgr.J00623 Eucalyptus grandis HOM05D001813 ORTHO05D008124 8.1e-10 66.2 76 50.0
Glyma.20G053200 Glycine max HOM05D001813 ORTHO05D008124 8.1e-10 66.2 76 51.3
CAN.G280.22 Capsicum annuum HOM05D001813 ORTHO05D008124 1.1e-09 65.9 76 52.6
CARHR191810 Cardamine hirsuta HOM05D001813 ORTHO05D008124 1.1e-09 65.9 76 52.6
Thhalv10013841m.g Eutrema salsugineum HOM05D001813 ORTHO05D008124 1.1e-09 65.9 76 52.6
Cpa.g.sc103.70 Carica papaya HOM05D001813 ORTHO05D008124 1.4e-09 65.5 76 50.0
Ca_16236_v3 Cicer arietinum L. HOM05D001813 ORTHO05D008124 1.4e-09 65.5 76 51.3
Sopen11g029670 Solanum pennellii HOM05D001813 ORTHO05D008124 1.4e-09 65.5 76 51.3
Aa31LG1G13710 Aethionema arabicum HOM05D001813 ORTHO05D008124 1.8e-09 65.1 76 52.6
AL6G32610 Arabidopsis lyrata HOM05D001813 ORTHO05D008124 1.8e-09 65.1 72 54.2
Ciclev10031821m.g Citrus clementina HOM05D001813 ORTHO05D008124 1.8e-09 65.1 76 51.3
Lj6g0025568 Lotus japonicus HOM05D001813 ORTHO05D008124 1.8e-09 65.1 76 50.0
Lalb_Chr02g0158501 Lupinus albus HOM05D001813 ORTHO05D008124 1.8e-09 65.1 76 51.3
PSO675G1710 Papaver somniferum HOM05D001813 ORTHO05D008124 1.8e-09 65.1 76 48.7
THA.LOC104810965 Tarenaya hassleriana HOM05D001813 ORTHO05D008124 1.8e-09 65.1 76 51.3
MD11G1179300 Malus domestica HOM05D001813 ORTHO05D008124 2.4e-09 64.7 76 50.0
Prupe.5G009800 Prunus persica HOM05D001813 ORTHO05D008124 2.4e-09 64.7 76 50.0
Solyc11g072010.3 Solanum lycopersicum HOM05D001813 ORTHO05D008124 2.4e-09 64.7 72 52.8
TWI31G1397 Tripterygium wilfordii HOM05D001813 ORTHO05D008124 2.4e-09 64.7 76 50.0
COL.COLO4_18373 Corchorus olitorius HOM05D001813 ORTHO05D008124 3.1e-09 64.3 76 51.3
Duzib168G1187 Durio zibethinus HOM05D001813 ORTHO05D008124 3.1e-09 64.3 76 51.3
Gohir.A03G035300 Gossypium hirsutum HOM05D001813 ORTHO05D008124 3.1e-09 64.3 76 51.3
Gohir.D03G132900 Gossypium hirsutum HOM05D001813 ORTHO05D008124 3.1e-09 64.3 76 51.3
Gorai.003G140000 Gossypium raimondii HOM05D001813 ORTHO05D008124 3.1e-09 64.3 76 51.3
Phvul.L003537 Phaseolus vulgaris HOM05D001813 ORTHO05D008124 3.1e-09 64.3 76 50.0
VMungo0540G0768 Vigna mungo HOM05D001813 ORTHO05D008124 3.1e-09 64.3 76 50.0
AUR62020171 Chenopodium quinoa HOM05D001813 ORTHO05D008124 4.0e-09 63.9 63 57.1
Medtr3g079330 Medicago truncatula HOM05D001813 ORTHO05D008124 4.0e-09 63.9 76 50.0
Nitab4.5_0002567g0070 Nicotiana tabacum HOM05D001813 ORTHO05D008124 4.0e-09 63.9 76 50.0
Potri.004G196200 Populus trichocarpa HOM05D001813 ORTHO05D008124 4.0e-09 63.9 76 48.7
Sabra04G0133000 Salix brachista HOM05D001813 ORTHO05D008124 4.0e-09 63.9 76 48.7
Nn7g37283 Nelumbo nucifera HOM05D001813 ORTHO05D008124 5.3e-09 63.5 76 47.4
Carub.0006s1936 Capsella rubella HOM05D001813 ORTHO05D008124 6.9e-09 63.2 72 52.8
Thecc.09G336900 Theobroma cacao HOM05D001813 ORTHO05D008124 6.9e-09 63.2 76 50.0
BcaC04g19501 Brassica carinata HOM05D001813 ORTHO05D008124 9.0e-09 62.8 76 50.0
A10p19010 Brassica napus HOM05D001813 ORTHO05D008124 9.0e-09 62.8 76 50.0
C09p55020 Brassica napus HOM05D001813 ORTHO05D008124 9.0e-09 62.8 76 50.0
BolC9t58365H Brassica oleracea HOM05D001813 ORTHO05D008124 9.0e-09 62.8 76 50.0
BraA10t43979Z Brassica rapa HOM05D001813 ORTHO05D008124 9.0e-09 62.8 76 50.0
CSS0034856 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 9.0e-09 62.8 76 48.7
ATR0068G110 Amborella trichopoda HOM05D001813 ORTHO05D008124 1.2e-08 62.4 77 45.5
EL10Ac7g16223 Beta vulgaris HOM05D001813 ORTHO05D008124 1.2e-08 62.4 72 51.4
CSS0030952 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.2e-08 62.4 76 47.4
Manes.04G055488 Manihot esculenta HOM05D001813 ORTHO05D008124 1.2e-08 62.4 76 48.7
PGR119G1182 Punica granatum HOM05D001813 ORTHO05D008124 1.2e-08 62.4 76 51.3
Peaxi162Scf00217g01216 Petunia axillaris HOM05D001813 ORTHO05D008124 1.5e-08 62.0 76 48.7
QL01p020357 Quercus lobata HOM05D001813 ORTHO05D008124 1.5e-08 62.0 76 50.0
Atru.chr3.2923 Acer truncatum HOM05D001813 ORTHO05D008124 2.0e-08 61.6 76 48.7
Sc06g0006200 Simmondsia chinensis HOM05D001813 ORTHO05D008124 2.0e-08 61.6 76 48.7
TAR623G0200 Trochodendron aralioides HOM05D001813 ORTHO05D008124 2.6e-08 61.2 76 47.4
MSTRG.17658 Avicennia marina HOM05D001813 ORTHO05D008124 3.4e-08 60.8 76 47.4
Lj2C922G2 Lonicera japonica HOM05D001813 ORTHO05D008124 3.4e-08 60.8 72 51.4
Nitab4.5_0009952g0030 Nicotiana tabacum HOM05D001813 ORTHO05D008124 3.4e-08 60.8 76 48.7
SGA_v2.0_scaffold79G25520 Striga asiatica HOM05D001813 ORTHO05D008124 3.4e-08 60.8 78 47.4
HPP92_026681 Vanilla planifolia HOM05D001813 ORTHO05D008124 3.4e-08 60.8 76 47.4
AUR62001609 Chenopodium quinoa HOM05D001813 ORTHO05D008124 4.4e-08 60.5 72 50.0
MELO3C029399.2 Cucumis melo HOM05D001813 ORTHO05D008124 4.4e-08 60.5 76 47.4
CsaV3_1G042050 Cucumis sativus L. HOM05D001813 ORTHO05D008124 4.4e-08 60.5 76 47.4
Sp6g23480 Schrenkiella parvula HOM05D001813 ORTHO05D008124 4.4e-08 60.5 76 48.7
CiPaw.13G120200 Carya illinoinensis HOM05D001813 ORTHO05D008124 5.8e-08 60.1 76 47.4
Rhsim13G0201100 Rhododendron simsii HOM05D001813 ORTHO05D008124 5.8e-08 60.1 76 48.7
Zm00001eb405410 Zea mays HOM05D001813 ORTHO05D008124 5.8e-08 60.1 76 50.0
SHI04312 Sapria himalayana HOM05D001813 ORTHO05D008124 7.6e-08 59.7 76 50.0
DCAR_002126 Daucus carota HOM05D001813 ORTHO05D008124 9.9e-08 59.3 75 46.7
Migut.N02415 Erythranthe guttata HOM05D001813 ORTHO05D008124 9.9e-08 59.3 76 47.4
Cc01_g07600 Coffea canephora HOM05D001813 ORTHO05D008124 1.3e-07 58.9 72 50.0
Lsat_1_v5_gn_6_79520 Lactuca sativa HOM05D001813 ORTHO05D008124 1.3e-07 58.9 72 48.6
Oeu032072.1 Olea europaea HOM05D001813 ORTHO05D008124 1.3e-07 58.9 76 47.4
Dinv05236 Davidia involucrata HOM05D001813 ORTHO05D008124 1.7e-07 58.5 76 47.4
vmacro04107 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 1.7e-07 58.5 76 46.1
Haze_23659 Corylus avellana HOM05D001813 ORTHO05D008124 2.2e-07 58.2 76 46.1
FvH4_3g27120 Fragaria vesca HOM05D001813 ORTHO05D008124 2.2e-07 58.2 76 44.7
FAN11G0469 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.2e-07 58.2 76 44.7
FAN16G2170 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.2e-07 58.2 76 44.7
Sed0003336 Sechium edule HOM05D001813 ORTHO05D008124 2.2e-07 58.2 76 47.4
ClCG03G014190 Citrullus lanatus HOM05D001813 ORTHO05D008124 2.9e-07 57.8 76 44.7
FAN21G3701 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.9e-07 57.8 76 43.4
Os12g0125400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 2.9e-07 57.8 76 47.4
MBI19_g32309_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 3.8e-07 57.4 76 50.0
MBI19_g40249_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 3.8e-07 57.4 76 50.0
RcHm_v2.0_Chr5g0049661 Rosa chinensis HOM05D001813 ORTHO05D008124 3.8e-07 57.4 76 46.1
SalBow3G4352 Salvia bowleyana HOM05D001813 ORTHO05D008124 3.8e-07 57.4 76 46.1
Hund18828 Selenicereus undatus HOM05D001813 ORTHO05D008124 6.4e-07 56.6 72 48.6
HanXRQChr03g0084001 Helianthus annuus HOM05D001813 ORTHO05D008124 1.1e-06 55.8 72 50.0
Os11g0128800 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 1.4e-06 55.5 76 46.1
GSVIVG01037466001 Vitis vinifera HOM05D001813 ORTHO05D008124 1.9e-06 55.1 76 47.4
AagrBONN_evm.TU.Sc2ySwM_228.5806 Anthoceros agrestis HOM05D001813 ORTHO05D008124 2.4e-06 54.7 72 44.4
FAN25G0391 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.4e-06 54.7 76 43.4
SMO112G0109 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 2.4e-06 54.7 76 43.4
ECA240G4767 Erigeron canadensis HOM05D001813 ORTHO05D008124 4.2e-06 53.9 72 45.8
HPP92_018006 Vanilla planifolia HOM05D001813 ORTHO05D008124 5.4e-06 53.5 90 38.9
SMO364G0184 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 9.3e-06 52.8 72 44.4


User provided reference genes

Program Settings