Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20880 Trifolium pratense HOM05D003378 ORTHO05D003942 1.6e-48 195.7 94 100.0
TPR.G1566 Trifolium pratense HOM05D003378 ORTHO05D003942 1.5e-41 172.6 98 87.8
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 7.3e-41 170.2 97 87.6
Medtr7g067340 Medicago truncatula HOM05D003378 ORTHO05D003942 1.6e-40 169.1 98 85.7
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 6.2e-40 167.2 98 85.7
Lj1g0014660 Lotus japonicus HOM05D003378 ORTHO05D003942 8.1e-40 166.8 97 84.5
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 1.1e-39 166.4 97 82.5
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 1.8e-39 165.6 97 84.5
MBI14_g04426_MAGBIO Magnolia biondii HOM05D003378 ORTHO05D003942 5.3e-39 164.1 97 80.4
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 6.9e-39 163.7 97 83.5
Dinv37075 Davidia involucrata HOM05D003378 ORTHO05D003942 6.9e-39 163.7 97 82.5
Duzib128G1405 Durio zibethinus HOM05D003378 ORTHO05D003942 9.0e-39 163.3 97 80.4
TAR369G0131 Trochodendron aralioides HOM05D003378 ORTHO05D003942 9.0e-39 163.3 97 80.4
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 1.2e-38 162.9 97 81.4
Potri.016G112600 Populus trichocarpa HOM05D003378 ORTHO05D003942 1.2e-38 162.9 97 80.4
Gohir.A01G225800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.5e-38 162.5 97 80.4
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 2.0e-38 162.2 97 81.4
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 2.6e-38 161.8 97 82.5
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 2.6e-38 161.8 97 81.4
Lj2C81T6 Lonicera japonica HOM05D003378 ORTHO05D003942 2.6e-38 161.8 97 81.4
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 2.6e-38 161.8 97 81.4
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 3.4e-38 161.4 98 80.6
Manes.08G089250 Manihot esculenta HOM05D003378 ORTHO05D003942 3.4e-38 161.4 97 82.5
GSVIVG01033998001 Vitis vinifera HOM05D003378 ORTHO05D003942 3.4e-38 161.4 97 80.4
Actinidia29123 Actinidia chinensis HOM05D003378 ORTHO05D003942 4.5e-38 161.0 97 81.4
Duzib106G1409 Durio zibethinus HOM05D003378 ORTHO05D003942 4.5e-38 161.0 97 79.4
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 5.8e-38 160.6 97 79.4
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 5.8e-38 160.6 97 79.4
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 7.6e-38 160.2 97 79.4
Gohir.A04G088800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 7.6e-38 160.2 97 79.4
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 7.6e-38 160.2 97 81.4
Cpa.g.sc163.3 Carica papaya HOM05D003378 ORTHO05D003942 1.3e-37 159.5 97 77.3
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 1.3e-37 159.5 97 80.4
ECA247G2610 Erigeron canadensis HOM05D003378 ORTHO05D003942 1.7e-37 159.1 98 79.6
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 2.2e-37 158.7 97 80.4
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 2.2e-37 158.7 97 80.4
Dinv14534 Davidia involucrata HOM05D003378 ORTHO05D003942 2.2e-37 158.7 97 80.4
HanXRQChr10g0287061 Helianthus annuus HOM05D003378 ORTHO05D003942 2.2e-37 158.7 98 78.6
Sabra16G0108300 Salix brachista HOM05D003378 ORTHO05D003942 2.2e-37 158.7 97 79.4
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 2.2e-37 158.7 97 80.4
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.9e-37 158.3 97 80.4
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 2.9e-37 158.3 97 80.4
Glyma.07G146400 Glycine max HOM05D003378 ORTHO05D003942 2.9e-37 158.3 97 81.4
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 2.9e-37 158.3 97 81.4
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 3.8e-37 157.9 97 80.4
Gohir.D04G129200 Gossypium hirsutum HOM05D003378 ORTHO05D003942 3.8e-37 157.9 97 78.4
Sc01g0006660 Simmondsia chinensis HOM05D003378 ORTHO05D003942 3.8e-37 157.9 97 77.3
Medtr4g015260 Medicago truncatula HOM05D003378 ORTHO05D003942 4.9e-37 157.5 97 77.3
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.9e-37 157.5 97 79.4
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 4.9e-37 157.5 97 77.3
SalBow4G1026 Salvia bowleyana HOM05D003378 ORTHO05D003942 4.9e-37 157.5 98 77.6
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 4.9e-37 157.5 98 77.6
TPR.G15969 Trifolium pratense HOM05D003378 ORTHO05D003942 4.9e-37 157.5 97 78.4
Os07g0100300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 6.4e-37 157.1 97 79.4
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 6.4e-37 157.1 97 79.4
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 6.4e-37 157.1 97 77.3
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 6.4e-37 157.1 97 79.4
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 8.4e-37 156.8 97 76.3
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 8.4e-37 156.8 97 80.4
Migut.J00201 Erythranthe guttata HOM05D003378 ORTHO05D003942 8.4e-37 156.8 98 79.6
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 8.4e-37 156.8 97 78.4
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 8.4e-37 156.8 97 78.4
PGSC0003DMG400011091 Solanum tuberosum HOM05D003378 ORTHO05D003942 8.4e-37 156.8 97 78.4
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 1.1e-36 156.4 97 78.4
Ca_20313_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 1.1e-36 156.4 97 78.4
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.1e-36 156.4 97 78.4
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 1.1e-36 156.4 97 77.3
Zm00001eb297970 Zea mays HOM05D003378 ORTHO05D003942 1.1e-36 156.4 97 79.4
Peaxi162Scf00009g01921 Petunia axillaris HOM05D003378 ORTHO05D003942 1.4e-36 156.0 97 78.4
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 1.4e-36 156.0 97 79.4
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 2.4e-36 155.2 97 78.4
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 2.4e-36 155.2 97 78.4
CAN.G1297.6 Capsicum annuum HOM05D003378 ORTHO05D003942 3.2e-36 154.8 97 78.4
Lsat_1_v5_gn_9_36000 Lactuca sativa HOM05D003378 ORTHO05D003942 3.2e-36 154.8 97 77.3
ATR0618G034 Amborella trichopoda HOM05D003378 ORTHO05D003942 4.2e-36 154.5 97 76.3
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 4.2e-36 154.5 97 77.3
HPP92_012629 Vanilla planifolia HOM05D003378 ORTHO05D003942 4.2e-36 154.5 97 76.3
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 5.4e-36 154.1 97 77.3
Manes.09G103000 Manihot esculenta HOM05D003378 ORTHO05D003942 5.4e-36 154.1 97 78.4
Lalb_Chr07g0193451 Lupinus albus HOM05D003378 ORTHO05D003942 7.1e-36 153.7 97 76.3
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 7.1e-36 153.7 98 74.5
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 7.1e-36 153.7 97 77.3
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 9.3e-36 153.3 97 76.3
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 9.3e-36 153.3 97 76.3
Migut.L01997 Erythranthe guttata HOM05D003378 ORTHO05D003942 1.2e-35 152.9 97 75.3
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 1.2e-35 152.9 97 77.3
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 1.2e-35 152.9 97 76.3
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 1.6e-35 152.5 97 77.3
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 1.6e-35 152.5 97 77.3
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 2.1e-35 152.1 97 75.3
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 2.1e-35 152.1 97 78.4
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 3.5e-35 151.4 97 77.3
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 4.6e-35 151.0 97 75.3
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 4.6e-35 151.0 103 75.7
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 6.0e-35 150.6 97 75.3
unitig_88.g27657 Utricularia gibba HOM05D003378 ORTHO05D003942 6.0e-35 150.6 98 72.4
AUR62025812 Chenopodium quinoa HOM05D003378 ORTHO05D003942 7.9e-35 150.2 97 77.3
Ah.02g114930 Amaranthus hybridus HOM05D003378 ORTHO05D003942 1.0e-34 149.8 97 76.3
AUR62020689 Chenopodium quinoa HOM05D003378 ORTHO05D003942 1.0e-34 149.8 97 77.3
Eucgr.A00516 Eucalyptus grandis HOM05D003378 ORTHO05D003942 1.3e-34 149.4 97 75.3
unitig_0.g1457 Utricularia gibba HOM05D003378 ORTHO05D003942 1.3e-34 149.4 98 73.5
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 1.8e-34 149.1 97 76.3
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.8e-34 149.1 97 76.3
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.8e-34 149.1 97 76.3
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.8e-34 149.1 97 76.3
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.8e-34 149.1 97 76.3
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 2.3e-34 148.7 97 76.3
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 2.3e-34 148.7 97 75.3
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 2.3e-34 148.7 97 74.2
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 3.0e-34 148.3 97 74.2
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 3.0e-34 148.3 92 78.3
DCAR_028819 Daucus carota HOM05D003378 ORTHO05D003942 3.9e-34 147.9 97 75.3
HPP92_019420 Vanilla planifolia HOM05D003378 ORTHO05D003942 3.9e-34 147.9 97 72.2
MSTRG.19023 Avicennia marina HOM05D003378 ORTHO05D003942 5.1e-34 147.5 97 75.3
Hund22726 Selenicereus undatus HOM05D003378 ORTHO05D003942 5.1e-34 147.5 97 74.2
PGR031G3689 Punica granatum HOM05D003378 ORTHO05D003942 8.7e-34 146.7 132 59.1
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 1.1e-33 146.4 97 75.3
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.9e-33 145.6 97 75.3
Peaxi162Scf00141g00615 Petunia axillaris HOM05D003378 ORTHO05D003942 2.5e-33 145.2 97 73.2
EL10Ac5g11530 Beta vulgaris HOM05D003378 ORTHO05D003942 4.3e-33 144.4 97 74.2
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 7.4e-33 143.7 124 63.7
Lj3C956T2 Lonicera japonica HOM05D003378 ORTHO05D003942 7.4e-33 143.7 97 71.1
PSO339G6012 Papaver somniferum HOM05D003378 ORTHO05D003942 9.6e-33 143.3 97 70.1
SalBow5G3819 Salvia bowleyana HOM05D003378 ORTHO05D003942 9.6e-33 143.3 97 73.2
SalBow5G4142 Salvia bowleyana HOM05D003378 ORTHO05D003942 9.6e-33 143.3 97 73.2
SEGI_03332 Sequoiadendron giganteum HOM05D003378 ORTHO05D003942 1.6e-32 142.5 97 70.1
SGA_v2.0_scaffold106G30519 Striga asiatica HOM05D003378 ORTHO05D003942 1.6e-32 142.5 97 72.2
HanXRQChr11g0329601 Helianthus annuus HOM05D003378 ORTHO05D003942 4.8e-32 141.0 97 68.0
Lalb_Chr13g0291251 Lupinus albus HOM05D003378 ORTHO05D003942 4.8e-32 141.0 97 70.1
AL6G10970 Arabidopsis lyrata HOM05D003378 ORTHO05D003942 6.2e-32 140.6 97 68.0
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 6.2e-32 140.6 97 68.0
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 6.2e-32 140.6 97 68.0
Os01g0142300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 8.1e-32 140.2 97 68.0
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 1.1e-31 139.8 125 60.0
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 1.1e-31 139.8 97 68.0
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 1.1e-31 139.8 97 68.0
Zm00001eb335670 Zea mays HOM05D003378 ORTHO05D003942 1.1e-31 139.8 97 67.0
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 1.4e-31 139.4 97 67.0
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 1.4e-31 139.4 97 68.0
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 1.4e-31 139.4 97 68.0
BcaC06g31965 Brassica carinata HOM05D003378 ORTHO05D003942 3.1e-31 138.3 97 67.0
BcaC06g31967 Brassica carinata HOM05D003378 ORTHO05D003942 3.1e-31 138.3 97 67.0
PSO801G0661 Papaver somniferum HOM05D003378 ORTHO05D003942 3.1e-31 138.3 97 69.1
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 4.0e-31 137.9 104 63.5
BcaNung02769 Brassica carinata HOM05D003378 ORTHO05D003942 4.0e-31 137.9 97 68.0
ECA248G0513 Erigeron canadensis HOM05D003378 ORTHO05D003942 6.9e-31 137.1 97 67.0
A10p33660 Brassica napus HOM05D003378 ORTHO05D003942 1.5e-30 136.0 102 64.7
CDE02G3708 Ceratophyllum demersum HOM05D003378 ORTHO05D003942 1.5e-30 136.0 97 68.0
vmacro08599 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 1.5e-30 136.0 97 70.1
DCAR_024027 Daucus carota HOM05D003378 ORTHO05D003942 1.3e-29 132.9 97 67.0
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 1.7e-29 132.5 103 62.1
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 2.9e-29 131.7 116 56.0
C09p74570 Brassica napus HOM05D003378 ORTHO05D003942 2.9e-29 131.7 92 69.6
BolC9t60189H Brassica oleracea HOM05D003378 ORTHO05D003942 2.9e-29 131.7 92 69.6
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 2.9e-29 131.7 116 56.0
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 3.8e-29 131.3 97 66.0
AagrBONN_evm.TU.Sc2ySwM_228.713 Anthoceros agrestis HOM05D003378 ORTHO05D003942 6.4e-29 130.6 98 65.3
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 8.4e-29 130.2 97 64.9
Zm00001eb011720 Zea mays HOM05D003378 ORTHO05D003942 2.5e-28 128.6 97 60.8
Pp3c9_8520 Physcomitrium patens HOM05D003378 ORTHO05D003942 4.2e-28 127.9 96 64.6
Pp3c15_4410 Physcomitrium patens HOM05D003378 ORTHO05D003942 1.6e-27 125.9 96 61.5
Os03g0265100 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 3.5e-27 124.8 97 57.7
Mapoly0129s0040 Marchantia polymorpha HOM05D003378 ORTHO05D003942 4.6e-27 124.4 97 61.9
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 3.0e-26 121.7 89 69.7
SMO118G0052 Selaginella moellendorffii HOM05D003378 ORTHO05D003942 1.1e-25 119.8 96 59.4
TPR.G15967 Trifolium pratense HOM05D003378 ORTHO05D003942 6.2e-24 114.0 81 71.6
TPR.G13200 Trifolium pratense HOM05D003378 ORTHO05D003942 3.1e-23 111.7 57 91.2
CBR_g3329 Chara braunii HOM05D003378 ORTHO05D003942 1.2e-22 109.8 97 52.6
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 2.0e-22 109.0 70 74.3
HanXRQChr04g0127691 Helianthus annuus HOM05D003378 ORTHO05D003942 1.7e-21 105.9 83 60.2
Gorai.012G112200 Gossypium raimondii HOM05D003378 ORTHO05D003942 2.7e-19 98.6 97 54.6
Rhsim04G0166600 Rhododendron simsii HOM05D003378 ORTHO05D003942 8.7e-18 93.6 104 50.0
TAR623G1156 Trochodendron aralioides HOM05D003378 ORTHO05D003942 3.7e-16 88.2 46 91.3
TWI53G0359 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 9.0e-15 83.6 53 75.5
TPR.G33937 Trifolium pratense HOM05D003378 ORTHO05D003942 5.9e-14 80.9 51 84.3
BcaB01g06094 Brassica carinata HOM05D003378 ORTHO05D003942 9.4e-12 73.6 54 59.3
Cre16.g689150 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 1.6e-11 72.8 97 40.2
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 5.1e-10 67.8 94 39.4
BraA10t45397Z Brassica rapa HOM05D003378 ORTHO05D003942 7.4e-09 63.9 35 80.0
MCO07G378 Micromonas commoda HOM05D003378 ORTHO05D003942 1.5e-06 56.2 96 38.5
AagrBONN_evm.TU.Sc2ySwM_228.715 Anthoceros agrestis HOM05D003378 ORTHO05D003942 2.6e-06 55.5 67 41.8


User provided reference genes

Program Settings