Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20855 Trifolium pratense HOM05D002420 ORTHO05D002422 7.9e-101 370.5 201 100.0
TPR.G5959 Trifolium pratense HOM05D002420 ORTHO05D002422 2.8e-53 212.6 135 74.8
Ca_22427_v3 Cicer arietinum L. HOM05D002420 ORTHO05D002422 4.3e-46 188.7 139 68.3
Psat4g001840 Pisum sativum HOM05D002420 ORTHO05D002422 9.5e-46 187.6 135 69.6
Lj4g0009025 Lotus japonicus HOM05D002420 ORTHO05D002422 2.9e-42 176.0 137 60.6
Medtr4g134390 Medicago truncatula HOM05D002420 ORTHO05D002422 4.1e-41 172.2 139 61.9
Lalb_Chr16g0386521 Lupinus albus HOM05D002420 ORTHO05D002422 7.8e-40 167.9 135 57.8
Lj2g0005175 Lotus japonicus HOM05D002420 ORTHO05D002422 7.3e-38 161.4 130 60.0
Ca_28035_v3 Cicer arietinum L. HOM05D002420 ORTHO05D002422 1.8e-36 156.8 115 67.8
CANSAT01G0107 Cannabis sativa HOM05D002420 ORTHO05D002422 8.9e-36 154.5 132 52.3
Lalb_Chr05g0225771 Lupinus albus HOM05D002420 ORTHO05D002422 8.9e-36 154.5 132 53.8
arahy.Tifrunner.gnm1.ann1.TS9750 Arachis hypogaea HOM05D002420 ORTHO05D002422 3.2e-33 146.0 131 49.6
Glyma.08G259900 Glycine max HOM05D002420 ORTHO05D002422 3.2e-33 146.0 139 52.5
Potri.015G028500 Populus trichocarpa HOM05D002420 ORTHO05D002422 7.1e-33 144.8 135 51.9
arahy.Tifrunner.gnm1.ann1.D2CQLD Arachis hypogaea HOM05D002420 ORTHO05D002422 1.6e-32 143.7 131 48.9
Sabra15G0023700 Salix brachista HOM05D002420 ORTHO05D002422 7.8e-32 141.4 132 52.3
CSS0028398 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 1.3e-31 140.6 133 47.4
CSS0031967 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 1.3e-31 140.6 133 47.4
Manes.05G199200 Manihot esculenta HOM05D002420 ORTHO05D002422 3.0e-31 139.4 134 48.5
Actinidia35149 Actinidia chinensis HOM05D002420 ORTHO05D002422 1.1e-30 137.5 132 49.2
Thecc.09G282200 Theobroma cacao HOM05D002420 ORTHO05D002422 1.5e-30 137.1 134 48.5
COL.COLO4_19852 Corchorus olitorius HOM05D002420 ORTHO05D002422 1.9e-30 136.7 134 46.3
QL05p077107 Quercus lobata HOM05D002420 ORTHO05D002422 4.3e-30 135.6 139 51.8
QL93p0073_1187 Quercus lobata HOM05D002420 ORTHO05D002422 9.5e-30 134.4 137 51.8
Sed0018683 Sechium edule HOM05D002420 ORTHO05D002422 9.5e-30 134.4 132 47.0
Atru.chr9.129 Acer truncatum HOM05D002420 ORTHO05D002422 1.2e-29 134.0 134 46.3
Duzib168G0815 Durio zibethinus HOM05D002420 ORTHO05D002422 1.2e-29 134.0 133 49.6
ClCG06G012330 Citrullus lanatus HOM05D000759 ORTHO05D000574 3.6e-29 132.5 128 50.8
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 6.2e-29 131.7 130 43.8
Ciclev10020526m.g Citrus clementina HOM05D002420 ORTHO05D002422 8.1e-29 131.3 134 47.0
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 1.8e-28 130.2 138 42.8
Rhsim10G0188800 Rhododendron simsii HOM05D002420 ORTHO05D002422 4.0e-28 129.0 132 43.2
GSVIVG01026445001 Vitis vinifera HOM05D002420 ORTHO05D002422 6.8e-28 128.3 133 48.1
AUR62033032 Chenopodium quinoa HOM05D002420 ORTHO05D002422 8.9e-28 127.9 132 40.9
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 8.9e-28 127.9 134 44.8
Cpa.g.sc42.22 Carica papaya HOM05D002420 ORTHO05D002422 2.0e-27 126.7 131 46.6
Gohir.A09G095800 Gossypium hirsutum HOM05D000001 ORTHO05D010224 2.0e-27 126.7 133 45.1
AUR62040762 Chenopodium quinoa HOM05D002420 ORTHO05D002422 4.4e-27 125.6 132 40.9
EL10Ac8g18839 Beta vulgaris HOM05D002420 ORTHO05D002422 9.9e-27 124.4 132 38.6
Migut.O00261 Erythranthe guttata HOM05D002420 ORTHO05D002422 9.9e-27 124.4 131 48.1
Gohir.D09G095500 Gossypium hirsutum HOM05D000001 ORTHO05D010224 9.9e-27 124.4 133 44.4
Gorai.006G112200 Gossypium raimondii HOM05D000001 ORTHO05D010224 9.9e-27 124.4 133 44.4
Peaxi162Scf00171g00214 Petunia axillaris HOM05D002420 ORTHO05D002422 3.8e-26 122.5 133 43.6
DCAR_014748 Daucus carota HOM05D002420 ORTHO05D002422 3.2e-25 119.4 131 42.0
CAN.G929.25 Capsicum annuum HOM05D002420 ORTHO05D002422 5.4e-25 118.6 133 41.4
MELO3C010232.2 Cucumis melo HOM05D002420 ORTHO05D002422 3.5e-24 115.9 128 44.5
CsaV3_1G024340 Cucumis sativus L. HOM05D002420 ORTHO05D002422 4.6e-24 115.5 132 42.4
CsaV3_1G028850 Cucumis sativus L. HOM05D002420 ORTHO05D002422 4.6e-24 115.5 132 42.4
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 4.6e-24 115.5 131 39.7
Nitab4.5_0000782g0110 Nicotiana tabacum HOM05D002420 ORTHO05D002422 7.8e-24 114.8 133 39.1
Nitab4.5_0003040g0190 Nicotiana tabacum HOM05D000001 ORTHO05D010224 1.0e-23 114.4 131 39.7
Oeu038400.1 Olea europaea HOM05D002420 ORTHO05D002422 3.0e-23 112.8 111 48.6
PGSC0003DMG400010178 Solanum tuberosum HOM05D002420 ORTHO05D002422 3.0e-23 112.8 133 39.1
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 6.6e-23 111.7 127 40.9
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 1.1e-22 110.9 132 39.4
Ah.09g231660 Amaranthus hybridus HOM05D002420 ORTHO05D002422 1.9e-22 110.2 133 37.6
SGA_v2.0_scaffold90G27757 Striga asiatica HOM05D002420 ORTHO05D002422 2.5e-22 109.8 131 40.5
Migut.M00586 Erythranthe guttata HOM05D002420 ORTHO05D002422 3.6e-21 105.9 131 45.0
Migut.O00341 Erythranthe guttata HOM05D002420 ORTHO05D002422 3.6e-21 105.9 131 45.0
SalBow5G1081 Salvia bowleyana HOM05D002420 ORTHO05D002422 1.1e-20 104.4 132 42.4
Sopen03g029280 Solanum pennellii HOM05D002420 ORTHO05D002422 1.5e-19 100.5 119 41.2
Solyc03g098570.1 Solanum lycopersicum HOM05D002420 ORTHO05D002422 5.8e-19 98.6 133 36.8
COL.COLO4_11599 Corchorus olitorius HOM05D002420 ORTHO05D002422 1.6e-16 90.5 111 41.4
QL04p019991 Quercus lobata HOM05D002420 ORTHO05D002422 5.1e-15 85.5 143 34.3
QL04p020508 Quercus lobata HOM05D002420 ORTHO05D002422 6.6e-15 85.1 143 34.3
DCAR_015611 Daucus carota HOM05D002420 ORTHO05D002422 2.5e-14 83.2 132 34.8
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 7.3e-14 81.6 86 40.7
Actinidia35147 Actinidia chinensis HOM05D002420 ORTHO05D002422 3.6e-13 79.3 91 46.2
arahy.Tifrunner.gnm1.ann1.XHBX5X Arachis hypogaea HOM05D002420 ORTHO05D002422 8.1e-13 78.2 128 37.5
Phvul.002G082800 Phaseolus vulgaris HOM05D002420 ORTHO05D002422 1.4e-12 77.4 57 54.4
QL04p019597 Quercus lobata HOM05D002420 ORTHO05D002422 5.3e-12 75.5 140 30.7
Sabra14G0057400 Salix brachista HOM05D002420 ORTHO05D002422 9.0e-12 74.7 153 32.0
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 4.5e-11 72.4 135 32.6
arahy.Tifrunner.gnm1.ann1.6LG1IJ Arachis hypogaea HOM05D002420 ORTHO05D002422 5.8e-11 72.0 129 35.7
TAR624G0469 Trochodendron aralioides HOM05D000007 ORTHO05D000521 7.1e-09 65.1 133 30.8
PSO675G8333 Papaver somniferum HOM05D000007 ORTHO05D000676 9.3e-09 64.7 134 32.1
TWI12G0320 Tripterygium wilfordii HOM05D000007 ORTHO05D021355 1.2e-08 64.3 130 30.8
QL08p054586 Quercus lobata HOM05D002420 ORTHO05D002422 2.7e-08 63.2 138 30.4
QL08p054650 Quercus lobata HOM05D002420 ORTHO05D002422 2.7e-08 63.2 149 29.5
QL08p055477 Quercus lobata HOM05D002420 ORTHO05D002422 2.7e-08 63.2 150 30.0
Hma1.2p1_0127F.1_g059580 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 3.5e-08 62.8 84 44.0
QL08p054647 Quercus lobata HOM05D002420 ORTHO05D002422 3.5e-08 62.8 150 30.0
Aqoxy2G02919 Aquilegia oxysepala HOM05D007162 ORTHO05D007631 4.6e-08 62.4 126 35.7
QL07p009501 Quercus lobata HOM05D000007 ORTHO05D000039 4.6e-08 62.4 122 33.6
QL08p055137 Quercus lobata HOM05D002420 ORTHO05D002422 6.0e-08 62.0 136 30.9
Duzib106G0932 Durio zibethinus HOM05D000664 ORTHO05D000491 7.9e-08 61.6 133 28.6
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 7.9e-08 61.6 135 28.1
Haze_07023 Corylus avellana HOM05D000007 ORTHO05D000017 1.0e-07 61.2 137 32.1
Duzib177G0294 Durio zibethinus HOM05D000664 ORTHO05D000491 1.3e-07 60.8 137 28.5
QL08p017442 Quercus lobata HOM05D000007 ORTHO05D000017 1.3e-07 60.8 143 29.4
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 1.3e-07 60.8 139 32.4
Aqoxy3G01316 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 1.8e-07 60.5 154 27.3
AUR62026585 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.8e-07 60.5 135 31.9
PSO424G0001 Papaver somniferum HOM05D000664 ORTHO05D000491 2.3e-07 60.1 131 28.2
PSO542G0001 Papaver somniferum HOM05D000664 ORTHO05D000491 2.3e-07 60.1 131 28.2
PSO593G0001 Papaver somniferum HOM05D000664 ORTHO05D000491 2.3e-07 60.1 131 28.2
PSO601G0014 Papaver somniferum HOM05D000664 ORTHO05D000491 2.3e-07 60.1 131 28.2
PSO161G0051 Papaver somniferum HOM05D008326 ORTHO05D001155 3.0e-07 59.7 144 29.9
PSO675G7943 Papaver somniferum HOM05D000664 ORTHO05D000491 3.0e-07 59.7 148 29.1
Aqoxy6G01072 Aquilegia oxysepala HOM05D007162 ORTHO05D021355 3.9e-07 59.3 125 32.0
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 3.9e-07 59.3 141 28.4
Gohir.A01G035600 Gossypium hirsutum HOM05D007162 ORTHO05D007631 3.9e-07 59.3 119 31.1
Gohir.A10G001600 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.9e-07 59.3 132 28.8
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 5.1e-07 58.9 135 28.9
SalBow4G3183 Salvia bowleyana HOM05D000007 ORTHO05D000017 5.1e-07 58.9 50 50.0
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 6.7e-07 58.5 119 27.7
Gohir.D10G001700 Gossypium hirsutum HOM05D000664 ORTHO05D000491 6.7e-07 58.5 132 28.0
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 6.7e-07 58.5 119 27.7
Gorai.011G002100 Gossypium raimondii HOM05D000664 ORTHO05D000491 6.7e-07 58.5 132 28.0
PSO210G6997 Papaver somniferum HOM05D000664 ORTHO05D000491 6.7e-07 58.5 129 33.3
QL07p008965 Quercus lobata HOM05D000007 ORTHO05D000039 6.7e-07 58.5 121 26.4
TAR624G0498 Trochodendron aralioides HOM05D000007 ORTHO05D000017 6.7e-07 58.5 138 31.2
Dinv19775 Davidia involucrata HOM05D000007 ORTHO05D000039 8.7e-07 58.2 138 27.5
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 8.7e-07 58.2 124 29.8
HanXRQChr01g0029461 Helianthus annuus HOM05D008898 ORTHO05D001155 8.7e-07 58.2 136 27.2
COL.COLO4_13626 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.1e-06 57.8 135 25.9
Lsat_1_v5_gn_1_40801 Lactuca sativa HOM05D007162 ORTHO05D007631 1.1e-06 57.8 119 31.1
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 1.5e-06 57.4 137 28.5
PSO724G0275 Papaver somniferum HOM05D008326 ORTHO05D001155 1.5e-06 57.4 139 28.8
Sabra17G0052300 Salix brachista HOM05D000007 ORTHO05D000017 1.5e-06 57.4 126 31.7
Sabra17G0052500 Salix brachista HOM05D000007 ORTHO05D000017 1.5e-06 57.4 126 31.7
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 1.5e-06 57.4 121 32.2
GSVIVG01001507001 Vitis vinifera HOM05D002258 ORTHO05D002422 1.5e-06 57.4 82 42.7
Aqoxy2G02516 Aquilegia oxysepala HOM05D007779 ORTHO05D009863 1.9e-06 57.0 144 26.4
Cfa007611 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.9e-06 57.0 108 33.3
Ciclev10006809m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.9e-06 57.0 53 52.8
ECA240G3692 Erigeron canadensis HOM05D000007 ORTHO05D000676 1.9e-06 57.0 139 24.5
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 1.9e-06 57.0 127 23.6
EL10Ac2g03769 Beta vulgaris HOM05D002420 ORTHO05D002422 2.5e-06 56.6 160 28.8
EL10Ac2g03773 Beta vulgaris HOM05D002420 ORTHO05D002422 2.5e-06 56.6 160 28.8
QL04p020224 Quercus lobata HOM05D002420 ORTHO05D002422 2.5e-06 56.6 78 30.8
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 2.5e-06 56.6 137 27.0
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 3.3e-06 56.2 144 27.1
COL.COLO4_38551 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.3e-06 56.2 140 26.4
Duzib177G1036 Durio zibethinus HOM05D000664 ORTHO05D000491 3.3e-06 56.2 133 27.1
FvH4_2g33500 Fragaria vesca HOM05D000007 ORTHO05D000017 3.3e-06 56.2 146 29.5
Nn3g18583 Nelumbo nucifera HOM05D000664 ORTHO05D000491 3.3e-06 56.2 137 27.7
PSO229G0005 Papaver somniferum HOM05D000664 ORTHO05D000491 3.3e-06 56.2 128 28.9
Potri.010G254000 Populus trichocarpa HOM05D000664 ORTHO05D000491 3.3e-06 56.2 131 29.0
QL07p009195 Quercus lobata HOM05D000007 ORTHO05D000039 3.3e-06 56.2 136 30.9
SalBow4G0613 Salvia bowleyana HOM05D000007 ORTHO05D000017 3.3e-06 56.2 83 38.6
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 3.3e-06 56.2 138 26.8
Aqoxy2G02259 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 4.3e-06 55.8 112 31.2
Dinv23189 Davidia involucrata HOM05D000571 ORTHO05D000435 4.3e-06 55.8 131 30.5
Duzib177G1102 Durio zibethinus HOM05D000664 ORTHO05D000491 4.3e-06 55.8 133 27.1
FvH4_2g35930 Fragaria vesca HOM05D000664 ORTHO05D000491 4.3e-06 55.8 123 29.3
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 4.3e-06 55.8 136 27.9
PSO832G2648 Papaver somniferum HOM05D000007 ORTHO05D000017 4.3e-06 55.8 147 28.6
Psat1g018880 Pisum sativum HOM05D000007 ORTHO05D000017 4.3e-06 55.8 106 29.2
QL07p009457 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-06 55.8 62 45.2
COL.COLO4_38550 Corchorus olitorius HOM05D000664 ORTHO05D000491 5.6e-06 55.5 134 28.4
Dinv44143 Davidia involucrata HOM05D000007 ORTHO05D000039 5.6e-06 55.5 122 31.1
Gohir.A10G174800 Gossypium hirsutum HOM05D007162 ORTHO05D007631 5.6e-06 55.5 119 31.1
HanXRQChr15g0474391 Helianthus annuus HOM05D008898 ORTHO05D001155 5.6e-06 55.5 137 29.2
Medtr2g046900 Medicago truncatula HOM05D000007 ORTHO05D000017 5.6e-06 55.5 122 29.5
SalBow2G0242 Salvia bowleyana HOM05D003262 ORTHO05D003608 5.6e-06 55.5 50 48.0
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 5.6e-06 55.5 123 30.9
Migut.G00030 Erythranthe guttata HOM05D007162 ORTHO05D007631 7.4e-06 55.1 125 28.0
Gohir.A09G200800 Gossypium hirsutum HOM05D000007 ORTHO05D000017 7.4e-06 55.1 137 29.2
Lsat_1_v5_gn_2_76641 Lactuca sativa HOM05D002420 ORTHO05D002422 7.4e-06 55.1 121 31.4
Lsat_1_v5_gn_9_104260 Lactuca sativa HOM05D000007 ORTHO05D000521 7.4e-06 55.1 136 23.5
PSO724G0320 Papaver somniferum HOM05D000664 ORTHO05D000491 7.4e-06 55.1 135 28.1
QL11p009094 Quercus lobata HOM05D001729 ORTHO05D001155 7.4e-06 55.1 138 26.1
SalBow7G3210 Salvia bowleyana HOM05D000007 ORTHO05D000521 7.4e-06 55.1 134 30.6
PGSC0003DMG400039496 Solanum tuberosum HOM05D000007 ORTHO05D000017 7.4e-06 55.1 138 30.4
Thecc.04G270100 Theobroma cacao HOM05D000007 ORTHO05D000017 7.4e-06 55.1 45 57.8
Atru.chr13.437 Acer truncatum HOM05D000007 ORTHO05D000017 9.6e-06 54.7 130 33.8
CDE06G0907 Ceratophyllum demersum HOM05D000855 ORTHO05D000491 9.6e-06 54.7 138 26.1
FAN27G2908 Fragaria x ananassa HOM05D000664 ORTHO05D000491 9.6e-06 54.7 123 27.6
PSO832G1216 Papaver somniferum HOM05D000007 ORTHO05D000676 9.6e-06 54.7 148 27.7
PSO832G1314 Papaver somniferum HOM05D000007 ORTHO05D000676 9.6e-06 54.7 132 28.8
QL04p013554 Quercus lobata HOM05D002420 ORTHO05D002422 9.6e-06 54.7 113 31.0


User provided reference genes

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