Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20847 Trifolium pratense HOM05D005948 ORTHO05D007689 1.3e-39 166.0 86 100.0
Psat5g230800 Pisum sativum HOM05D005948 ORTHO05D007689 5.2e-33 144.1 86 87.2
Ca_14119_v3 Cicer arietinum L. HOM05D005948 ORTHO05D007689 2.6e-32 141.7 88 86.4
Medtr3g009160 Medicago truncatula HOM05D005948 ORTHO05D007689 8.2e-31 136.7 87 85.1
Thecc.03G158700 Theobroma cacao HOM05D005948 ORTHO05D007689 8.0e-18 93.6 67 71.6
Gohir.D11G010266 Gossypium hirsutum HOM05D005948 ORTHO05D007689 1.4e-17 92.8 68 67.6
Gorai.007G008100 Gossypium raimondii HOM05D005948 ORTHO05D007689 1.4e-17 92.8 68 67.6
Duzib205G0588 Durio zibethinus HOM05D005948 ORTHO05D007689 3.0e-17 91.7 67 68.7
Lalb_Chr18g0048781 Lupinus albus HOM05D005948 ORTHO05D007689 6.8e-17 90.5 66 71.2
arahy.Tifrunner.gnm1.ann1.1LKT55 Arachis hypogaea HOM05D005948 ORTHO05D007689 8.8e-17 90.1 75 61.3
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 8.8e-17 90.1 77 66.2
arahy.Tifrunner.gnm1.ann1.UP65TY Arachis hypogaea HOM05D005948 ORTHO05D007689 1.5e-16 89.4 60 73.3
Gohir.A11G007600 Gossypium hirsutum HOM05D005948 ORTHO05D007689 1.5e-16 89.4 68 66.2
Glyma.04G117400 Glycine max HOM05D005948 ORTHO05D007689 2.0e-16 89.0 86 57.0
AUR62016181 Chenopodium quinoa HOM05D005948 ORTHO05D007689 2.6e-16 88.6 52 78.8
AUR62035100 Chenopodium quinoa HOM05D005948 ORTHO05D007689 2.6e-16 88.6 52 78.8
COL.COLO4_14151 Corchorus olitorius HOM05D005948 ORTHO05D007689 5.7e-16 87.4 67 65.7
Phvul.005G006700 Phaseolus vulgaris HOM05D005948 ORTHO05D007689 5.7e-16 87.4 53 79.2
TWI23G0886 Tripterygium wilfordii HOM05D005948 ORTHO05D007689 5.7e-16 87.4 57 73.7
Hund11806 Selenicereus undatus HOM05D005948 ORTHO05D007689 7.5e-16 87.0 52 76.9
Potri.015G129300 Populus trichocarpa HOM05D005948 ORTHO05D007689 1.3e-15 86.3 54 72.2
VMungo1080G1213 Vigna mungo HOM05D005948 ORTHO05D007689 1.7e-15 85.9 58 77.6
QL09p019069 Quercus lobata HOM05D005948 ORTHO05D007689 2.2e-15 85.5 58 72.4
FAN10G0255 Fragaria x ananassa HOM05D005948 ORTHO05D007689 3.7e-15 84.7 62 67.7
MD07G1256400 Malus domestica HOM05D005948 ORTHO05D007689 3.7e-15 84.7 57 68.4
Atru.chr1.666 Acer truncatum HOM05D005948 ORTHO05D007689 4.8e-15 84.3 58 69.0
Atru.chr1.671 Acer truncatum HOM05D005948 ORTHO05D007689 4.8e-15 84.3 58 69.0
Aqoxy5G03938 Aquilegia oxysepala HOM05D005948 ORTHO05D007689 6.3e-15 84.0 67 64.2
EL10Ac3g05815 Beta vulgaris HOM05D005948 ORTHO05D007689 6.3e-15 84.0 72 59.7
Cpa.g.sc3.295 Carica papaya HOM05D005948 ORTHO05D007689 6.3e-15 84.0 75 57.3
CiPaw.04G061500 Carya illinoinensis HOM05D005948 ORTHO05D007689 6.3e-15 84.0 51 78.4
FvH4_7g27930 Fragaria vesca HOM05D005948 ORTHO05D007689 6.3e-15 84.0 59 67.8
FAN03G1032 Fragaria x ananassa HOM05D005948 ORTHO05D007689 6.3e-15 84.0 59 67.8
Lj8C39T8 Lonicera japonica HOM05D005948 ORTHO05D007689 1.1e-14 83.2 52 76.9
Prupe.2G280500 Prunus persica HOM05D005948 ORTHO05D007689 1.4e-14 82.8 60 70.0
Ah.07g208030 Amaranthus hybridus HOM05D001737 ORTHO05D001735 1.8e-14 82.4 52 73.1
Sed0017785 Sechium edule HOM05D005948 ORTHO05D007689 1.8e-14 82.4 56 67.9
Actinidia25023 Actinidia chinensis HOM05D005948 ORTHO05D007689 2.4e-14 82.0 52 73.1
Manes.14G034200 Manihot esculenta HOM05D005948 ORTHO05D007689 2.4e-14 82.0 54 72.2
vmacro06779 Vaccinium macrocarpon HOM05D005948 ORTHO05D007689 2.4e-14 82.0 52 73.1
FAN06G0529 Fragaria x ananassa HOM05D005948 ORTHO05D007689 3.1e-14 81.6 59 66.1
FAN06G2156 Fragaria x ananassa HOM05D005948 ORTHO05D007689 3.1e-14 81.6 59 66.1
Ah.07g208040 Amaranthus hybridus HOM05D005948 ORTHO05D007689 4.1e-14 81.3 52 73.1
ClCG05G007440 Citrullus lanatus HOM05D005948 ORTHO05D007689 7.0e-14 80.5 54 66.7
THA.LOC104811515 Tarenaya hassleriana HOM05D005948 ORTHO05D007689 7.0e-14 80.5 58 69.0
CsaV3_3G016260 Cucumis sativus L. HOM05D005948 ORTHO05D007689 9.1e-14 80.1 54 66.7
Ciclev10004402m.g Citrus clementina HOM05D005948 ORTHO05D007689 1.2e-13 79.7 58 69.0
Lsat_1_v5_gn_8_9260 Lactuca sativa HOM05D005948 ORTHO05D007689 1.2e-13 79.7 52 73.1
Nitab4.5_0000072g0570 Nicotiana tabacum HOM05D005948 ORTHO05D007689 1.2e-13 79.7 52 73.1
RcHm_v2.0_Chr1g0374891 Rosa chinensis HOM05D005948 ORTHO05D007689 1.2e-13 79.7 60 65.0
Ah.07g208140 Amaranthus hybridus HOM05D005948 ORTHO05D007689 1.6e-13 79.3 52 71.2
PGSC0003DMG401023000 Solanum tuberosum HOM05D005948 ORTHO05D007689 1.6e-13 79.3 52 73.1
Nitab4.5_0001548g0060 Nicotiana tabacum HOM05D005948 ORTHO05D007689 2.0e-13 79.0 52 73.1
Solyc03g083580.3 Solanum lycopersicum HOM05D005948 ORTHO05D007689 2.0e-13 79.0 52 71.2
BcaB01g04169 Brassica carinata HOM05D005948 ORTHO05D007689 2.7e-13 78.6 60 68.3
BcaC01g06127 Brassica carinata HOM05D005948 ORTHO05D007689 2.7e-13 78.6 60 68.3
C03p18990 Brassica napus HOM05D005948 ORTHO05D007689 2.7e-13 78.6 60 68.3
BolC3t14288H Brassica oleracea HOM05D005948 ORTHO05D007689 2.7e-13 78.6 60 68.3
MELO3C006824.2 Cucumis melo HOM05D005948 ORTHO05D007689 2.7e-13 78.6 54 64.8
DCAR_018091 Daucus carota HOM05D005948 ORTHO05D007689 3.5e-13 78.2 54 68.5
AT5G51540 Arabidopsis thaliana HOM05D005948 ORTHO05D007689 4.5e-13 77.8 52 73.1
HanXRQChr08g0223861 Helianthus annuus HOM05D005948 ORTHO05D007689 4.5e-13 77.8 83 51.8
Sopen03g023390 Solanum pennellii HOM05D005948 ORTHO05D007689 4.5e-13 77.8 52 71.2
GSVIVG01018572001 Vitis vinifera HOM05D005948 ORTHO05D007689 4.5e-13 77.8 69 62.3
A03p16120 Brassica napus HOM05D005948 ORTHO05D007689 5.9e-13 77.4 60 66.7
BraA03t10903Z Brassica rapa HOM05D005948 ORTHO05D007689 5.9e-13 77.4 60 66.7
SGA_v2.0_scaffold543G52820 Striga asiatica HOM05D005948 ORTHO05D007689 7.7e-13 77.0 52 69.2
Aa31LG3G7950 Aethionema arabicum HOM05D005948 ORTHO05D007689 1.0e-12 76.6 52 73.1
PSO063G6398 Papaver somniferum HOM05D005948 ORTHO05D007689 1.3e-12 76.3 52 75.0
Cc02_g04060 Coffea canephora HOM05D005948 ORTHO05D007689 1.7e-12 75.9 52 69.2
Rhsim03G0169500 Rhododendron simsii HOM05D005948 ORTHO05D007689 1.7e-12 75.9 73 56.2
Thhalv10012823m.g Eutrema salsugineum HOM05D005948 ORTHO05D007689 3.8e-12 74.7 60 65.0
Ah.07g207990 Amaranthus hybridus HOM05D005948 ORTHO05D007689 6.6e-12 73.9 52 65.4
Migut.F00455 Erythranthe guttata HOM05D005948 ORTHO05D007689 6.6e-12 73.9 52 65.4
CAN.G152.16 Capsicum annuum HOM05D005948 ORTHO05D007689 8.6e-12 73.6 52 69.2
AL8G25840 Arabidopsis lyrata HOM05D005948 ORTHO05D007689 1.5e-11 72.8 52 69.2
TAR375G0868 Trochodendron aralioides HOM05D005948 ORTHO05D007689 1.5e-11 72.8 83 55.4
ATR0115G032 Amborella trichopoda HOM05D005948 ORTHO05D007689 1.9e-11 72.4 85 47.1
Dinv22965 Davidia involucrata HOM05D005948 ORTHO05D007689 3.3e-11 71.6 49 67.3
ECA233G5295 Erigeron canadensis HOM05D005948 ORTHO05D007689 4.2e-11 71.2 78 47.4
SalBow4G1013 Salvia bowleyana HOM05D005948 ORTHO05D007689 4.2e-11 71.2 67 55.2
SalBow4G1780 Salvia bowleyana HOM05D005948 ORTHO05D007689 4.2e-11 71.2 67 55.2
CDE02G2841 Ceratophyllum demersum HOM05D005948 ORTHO05D007689 7.2e-11 70.5 54 66.7
unitig_46.g18766 Utricularia gibba HOM05D005948 ORTHO05D007689 8.0e-10 67.0 52 61.5
Os06g0686500 Oryza sativa ssp. japonica HOM05D005948 ORTHO05D007689 1.0e-09 66.6 52 61.5
PGR142G1204 Punica granatum HOM05D005948 ORTHO05D007689 1.4e-09 66.2 73 50.7
Oeu021716.2 Olea europaea HOM05D005948 ORTHO05D007689 3.0e-09 65.1 51 62.7
HPP92_003266 Vanilla planifolia HOM05D005948 ORTHO05D007689 3.0e-09 65.1 69 49.3
Zm00001eb225650 Zea mays HOM05D005948 ORTHO05D007689 1.5e-08 62.8 52 57.7
SEGI_04204 Sequoiadendron giganteum HOM05D005948 ORTHO05D007689 2.0e-08 62.4 67 52.2
AagrBONN_evm.TU.Sc2ySwM_228.3357 Anthoceros agrestis HOM05D005948 ORTHO05D007689 2.4e-06 55.5 51 49.0


User provided reference genes

Program Settings