Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20812 Trifolium pratense HOM05D004633 ORTHO05D005503 1.5e-100 369.4 175 100.0
TPR.G14594 Trifolium pratense HOM05D004633 ORTHO05D005503 4.8e-78 294.7 162 88.9
Psat4g085040 Pisum sativum HOM05D004633 ORTHO05D005503 1.0e-75 287.0 162 85.2
Medtr4g094905 Medicago truncatula HOM05D004633 ORTHO05D005503 4.4e-71 271.6 165 82.4
Ca_22131_v3 Cicer arietinum L. HOM05D004633 ORTHO05D005503 5.7e-71 271.2 159 83.0
arahy.Tifrunner.gnm1.ann1.H6KR5I Arachis hypogaea HOM05D004633 ORTHO05D005503 6.7e-64 247.7 160 77.5
arahy.Tifrunner.gnm1.ann1.ZUJJ2F Arachis hypogaea HOM05D004633 ORTHO05D005503 4.4e-63 245.0 160 76.2
Lj4g0002857 Lotus japonicus HOM05D004633 ORTHO05D005503 1.3e-62 243.4 155 77.4
Glyma.05G096300 Glycine max HOM05D004633 ORTHO05D005503 8.2e-62 240.7 146 80.1
Glyma.17G169000 Glycine max HOM05D004633 ORTHO05D005503 1.8e-61 239.6 151 78.1
Lalb_Chr05g0226241 Lupinus albus HOM05D004633 ORTHO05D005503 7.0e-61 237.7 153 75.2
VMungo0251G3622 Vigna mungo HOM05D004633 ORTHO05D005503 3.5e-60 235.3 146 78.8
Phvul.003G241100 Phaseolus vulgaris HOM05D004633 ORTHO05D005503 2.5e-58 229.2 146 76.0
Manes.13G119720 Manihot esculenta HOM05D004633 ORTHO05D005503 3.0e-56 222.2 151 69.5
Nn1g04752 Nelumbo nucifera HOM05D004633 ORTHO05D005503 8.8e-56 220.7 153 68.6
CANSAT25G1160 Cannabis sativa HOM05D004633 ORTHO05D005503 1.2e-55 220.3 157 65.6
Dinv30022 Davidia involucrata HOM05D004633 ORTHO05D005503 1.2e-55 220.3 153 68.0
Sed0006372 Sechium edule HOM05D004633 ORTHO05D005503 3.4e-55 218.8 150 68.0
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 4.4e-55 218.4 151 68.2
CsaV3_2G035640 Cucumis sativus L. HOM05D004633 ORTHO05D005503 5.7e-55 218.0 148 68.2
Thecc.01G061800 Theobroma cacao HOM05D004633 ORTHO05D005503 7.5e-55 217.6 158 62.7
Hma1.2p1_0017F.1_g011780 Hydrangea macrophylla HOM05D004633 ORTHO05D005503 9.8e-55 217.2 151 66.9
PGSC0003DMG400024962 Solanum tuberosum HOM05D004633 ORTHO05D005503 1.7e-54 216.5 151 67.5
Solyc02g093060.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 2.2e-54 216.1 151 67.5
ClCG02G008020 Citrullus lanatus HOM05D004633 ORTHO05D005503 2.8e-54 215.7 148 68.2
Sopen02g037630 Solanum pennellii HOM05D004633 ORTHO05D005503 2.8e-54 215.7 151 67.5
TAR376G0286 Trochodendron aralioides HOM05D004633 ORTHO05D005503 2.8e-54 215.7 150 67.3
Aqoxy5G01172 Aquilegia oxysepala HOM05D004633 ORTHO05D005503 3.7e-54 215.3 153 68.0
CiPaw.01G014400 Carya illinoinensis HOM05D004633 ORTHO05D005503 4.8e-54 214.9 158 65.8
MELO3C024784.2 Cucumis melo HOM05D004633 ORTHO05D005503 4.8e-54 214.9 148 67.6
HanXRQChr11g0328291 Helianthus annuus HOM05D004633 ORTHO05D005503 8.3e-54 214.2 150 66.7
QL06p040312 Quercus lobata HOM05D004633 ORTHO05D005503 8.3e-54 214.2 148 66.9
Duzib147G0002 Durio zibethinus HOM05D004633 ORTHO05D005503 1.1e-53 213.8 150 66.0
Sabra07G0042200 Salix brachista HOM05D004633 ORTHO05D005503 1.1e-53 213.8 152 67.1
Sed0019372 Sechium edule HOM05D004633 ORTHO05D005503 1.1e-53 213.8 148 69.6
Cfa004047 Carpinus fangiana HOM05D004633 ORTHO05D005503 1.4e-53 213.4 158 65.2
Gohir.D03G024900 Gossypium hirsutum HOM05D004633 ORTHO05D005503 1.4e-53 213.4 148 66.2
Gorai.003G026500 Gossypium raimondii HOM05D004633 ORTHO05D005503 1.8e-53 213.0 148 66.2
Manes.12G107300 Manihot esculenta HOM05D004633 ORTHO05D005503 2.4e-53 212.6 148 68.2
Potri.007G047300 Populus trichocarpa HOM05D004633 ORTHO05D005503 2.4e-53 212.6 152 66.4
Prupe.6G230700 Prunus persica HOM05D004633 ORTHO05D005503 2.4e-53 212.6 150 68.0
CAN.G370.28 Capsicum annuum HOM05D004633 ORTHO05D005503 3.1e-53 212.2 150 67.3
Cpa.g.sc55.108 Carica papaya HOM05D004633 ORTHO05D005503 4.1e-53 211.8 148 67.6
Nitab4.5_0003962g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 7.0e-53 211.1 158 62.7
Actinidia16468 Actinidia chinensis HOM05D004633 ORTHO05D005503 9.1e-53 210.7 148 67.6
HanXRQChr15g0490881 Helianthus annuus HOM05D004633 ORTHO05D005503 9.1e-53 210.7 150 66.0
COL.COLO4_11464 Corchorus olitorius HOM05D004633 ORTHO05D005503 1.2e-52 210.3 150 65.3
Nitab4.5_0000929g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 1.2e-52 210.3 151 66.2
Ciclev10025630m.g Citrus clementina HOM05D004633 ORTHO05D005503 1.6e-52 209.9 151 65.6
EL10Ac6g15705 Beta vulgaris HOM05D004633 ORTHO05D005503 2.0e-52 209.5 162 61.7
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 2.0e-52 209.5 150 66.0
MD15G1287200 Malus domestica HOM05D004633 ORTHO05D005503 4.5e-52 208.4 150 66.0
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 7.7e-52 207.6 148 64.2
Gohir.A02G155700 Gossypium hirsutum HOM05D004633 ORTHO05D005503 7.7e-52 207.6 148 65.5
SalBow5G0679 Salvia bowleyana HOM05D004633 ORTHO05D005503 7.7e-52 207.6 148 64.2
PGSC0003DMG400006483 Solanum tuberosum HOM05D004633 ORTHO05D005503 7.7e-52 207.6 151 62.9
Cc07_g06290 Coffea canephora HOM05D004633 ORTHO05D005503 1.0e-51 207.2 148 64.9
Sopen03g008320 Solanum pennellii HOM05D004633 ORTHO05D005503 1.7e-51 206.5 151 62.3
FAN23G1966 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.2e-51 206.1 150 65.3
THA.LOC104821245 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 2.2e-51 206.1 146 63.0
FAN19G2847 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.9e-51 205.7 150 65.3
Rhsim08G0098400 Rhododendron simsii HOM05D004633 ORTHO05D005503 3.8e-51 205.3 154 65.6
Zm00001eb227810 Zea mays HOM05D004633 ORTHO05D005503 6.5e-51 204.5 154 65.6
MSTRG.3439 Avicennia marina HOM05D004633 ORTHO05D005503 8.5e-51 204.1 153 62.1
AUR62003922 Chenopodium quinoa HOM05D004633 ORTHO05D005503 8.5e-51 204.1 148 62.8
ECA232G1704 Erigeron canadensis HOM05D004633 ORTHO05D005503 8.5e-51 204.1 150 65.3
FvH4_1g16470 Fragaria vesca HOM05D004633 ORTHO05D005503 8.5e-51 204.1 150 64.7
FAN26G1576 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.5e-51 204.1 150 64.7
TWI73G0624 Tripterygium wilfordii HOM05D004633 ORTHO05D005503 8.5e-51 204.1 149 63.8
CSS0046694 Camellia sinensis var. sinensis HOM05D004633 ORTHO05D005503 1.1e-50 203.8 148 66.2
MD02G1177300 Malus domestica HOM05D004633 ORTHO05D005503 1.1e-50 203.8 150 63.3
RcHm_v2.0_Chr2g0106351 Rosa chinensis HOM05D004633 ORTHO05D005503 1.5e-50 203.4 150 64.0
AUR62038236 Chenopodium quinoa HOM05D004633 ORTHO05D005503 3.2e-50 202.2 148 62.8
Solyc03g044270.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 4.2e-50 201.8 151 60.9
CAN.G82.15 Capsicum annuum HOM05D004633 ORTHO05D005503 7.2e-50 201.1 158 60.1
Sc03g0001790 Simmondsia chinensis HOM05D004633 ORTHO05D005503 7.2e-50 201.1 148 60.8
DCAR_010864 Daucus carota HOM05D004633 ORTHO05D005503 9.4e-50 200.7 148 62.8
FAN28G1894 Fragaria x ananassa HOM05D004633 ORTHO05D005503 9.4e-50 200.7 147 64.6
FAN28G2116 Fragaria x ananassa HOM05D004633 ORTHO05D005503 9.4e-50 200.7 147 64.6
Haze_15364 Corylus avellana HOM05D004633 ORTHO05D005503 1.6e-49 199.9 158 62.0
Os06g0712900 Oryza sativa ssp. japonica HOM05D004633 ORTHO05D005503 1.6e-49 199.9 146 67.1
vmacro17967 Vaccinium macrocarpon HOM05D004633 ORTHO05D005503 2.1e-49 199.5 149 65.8
Lsat_1_v5_gn_4_164460 Lactuca sativa HOM05D004633 ORTHO05D005503 2.7e-49 199.1 150 63.3
Aa31LG1G15750 Aethionema arabicum HOM05D004633 ORTHO05D005503 3.6e-49 198.7 152 62.5
PGR102G1926 Punica granatum HOM05D004633 ORTHO05D005503 6.1e-49 198.0 148 59.5
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 6.1e-49 198.0 149 61.7
THA.LOC104819242 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 8.0e-49 197.6 150 62.0
Atru.chr3.268 Acer truncatum HOM05D004633 ORTHO05D005503 1.0e-48 197.2 158 62.7
CARHR280410 Cardamine hirsuta HOM05D004633 ORTHO05D005503 2.3e-48 196.1 149 61.7
CDE02G4202 Ceratophyllum demersum HOM05D004633 ORTHO05D005503 4.0e-48 195.3 148 64.9
A07p16750 Brassica napus HOM05D004633 ORTHO05D005503 5.2e-48 194.9 149 61.7
BolC7t42968H Brassica oleracea HOM05D004633 ORTHO05D005503 8.8e-48 194.1 150 61.3
Migut.L00177 Erythranthe guttata HOM05D004633 ORTHO05D005503 1.2e-47 193.7 152 58.6
Sp2g29450 Schrenkiella parvula HOM05D004633 ORTHO05D005503 1.2e-47 193.7 150 62.7
C09p11170 Brassica napus HOM05D004633 ORTHO05D005503 1.5e-47 193.4 157 58.6
Thhalv10004143m.g Eutrema salsugineum HOM05D004633 ORTHO05D005503 2.0e-47 193.0 150 62.0
BcaC06g34804 Brassica carinata HOM05D004633 ORTHO05D005503 2.6e-47 192.6 150 60.7
C07p24480 Brassica napus HOM05D004633 ORTHO05D005503 3.4e-47 192.2 150 60.7
BolC9t54006H Brassica oleracea HOM05D004633 ORTHO05D005503 3.4e-47 192.2 157 58.6
BcaB04g20070 Brassica carinata HOM05D004633 ORTHO05D005503 4.4e-47 191.8 157 58.6
A09p09480 Brassica napus HOM05D004633 ORTHO05D005503 4.4e-47 191.8 148 61.5
BraA07t29400Z Brassica rapa HOM05D004633 ORTHO05D005503 4.4e-47 191.8 149 61.1
AL8G44120 Arabidopsis lyrata HOM05D004633 ORTHO05D005503 5.7e-47 191.4 149 61.7
BraA09t36596Z Brassica rapa HOM05D004633 ORTHO05D005503 5.7e-47 191.4 148 61.5
Carub.0008s2729 Capsella rubella HOM05D004633 ORTHO05D005503 5.7e-47 191.4 149 61.1
ECA246G0986 Erigeron canadensis HOM05D004633 ORTHO05D005503 5.7e-47 191.4 145 61.4
Lj7A74G30 Lonicera japonica HOM05D004633 ORTHO05D005503 5.7e-47 191.4 144 63.2
SGA_v2.0_scaffold10G05122 Striga asiatica HOM05D004633 ORTHO05D005503 7.5e-47 191.0 148 60.8
AT5G67220 Arabidopsis thaliana HOM05D004633 ORTHO05D005503 1.3e-46 190.3 149 61.1
BcaB02g09941 Brassica carinata HOM05D004633 ORTHO05D005503 1.7e-46 189.9 150 60.7
BcaC04g23204 Brassica carinata HOM05D004633 ORTHO05D005503 6.3e-46 188.0 157 57.3
HPP92_012974 Vanilla planifolia HOM05D004633 ORTHO05D005503 3.5e-44 182.2 148 60.8
SHI29406 Sapria himalayana HOM05D004633 ORTHO05D005503 1.1e-42 177.2 147 57.1
ATR0001G042 Amborella trichopoda HOM05D004633 ORTHO05D005503 1.9e-42 176.4 147 57.8
ECA246G1233 Erigeron canadensis HOM05D004633 ORTHO05D005503 1.9e-42 176.4 150 56.0
HanXRQChr11g0348441 Helianthus annuus HOM05D004633 ORTHO05D005503 2.5e-42 176.0 140 62.1
Lsat_1_v5_gn_3_90261 Lactuca sativa HOM05D004633 ORTHO05D005503 6.1e-41 171.4 146 54.8
SEGI_00124 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 2.3e-35 152.9 163 49.7
SEGI_29602 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 2.3e-35 152.9 163 49.7
Mapoly0125s0018 Marchantia polymorpha HOM05D004633 ORTHO05D005503 4.4e-31 138.7 157 46.5
Pp3c3_25920 Physcomitrium patens HOM05D004633 ORTHO05D005503 5.8e-31 138.3 141 50.4
QL06p040440 Quercus lobata HOM05D004633 ORTHO05D005503 7.8e-28 127.9 88 69.3
SMO169G0138 Selaginella moellendorffii HOM05D004633 ORTHO05D005503 3.0e-27 125.9 139 44.6
HanXRQChr15g0473611 Helianthus annuus HOM05D004633 ORTHO05D005503 3.9e-27 125.6 89 66.3
Pp3c13_19950 Physcomitrium patens HOM05D004633 ORTHO05D005503 5.0e-27 125.2 141 46.8
GSVIVG01022068001 Vitis vinifera HOM05D004633 ORTHO05D005503 7.3e-26 121.3 80 66.2
PGSC0003DMG400027934 Solanum tuberosum HOM05D004633 ORTHO05D005503 1.6e-25 120.2 91 59.3
Mapoly0048s0005 Marchantia polymorpha HOM05D004633 ORTHO05D005503 4.4e-23 112.1 142 44.4
Pp3c8_25410 Physcomitrium patens HOM05D004633 ORTHO05D005503 2.2e-22 109.8 121 47.9
Nn5g30384 Nelumbo nucifera HOM05D004633 ORTHO05D005503 2.9e-22 109.4 80 68.8
Nitab4.5_0007370g0010 Nicotiana tabacum HOM05D004633 ORTHO05D005503 7.8e-20 101.3 73 58.9
Peaxi162Scf00365g00413 Petunia axillaris HOM05D004633 ORTHO05D005503 7.8e-20 101.3 71 71.8
Medtr4g094902 Medicago truncatula HOM05D004633 ORTHO05D005503 1.3e-19 100.5 63 81.0
Cre12.g486900 Chlamydomonas reinhardtii HOM05D004633 ORTHO05D005503 5.6e-18 95.1 116 47.4
Eucgr.L01089 Eucalyptus grandis HOM05D004633 ORTHO05D005503 5.6e-18 95.1 61 73.8
CBR_g36684 Chara braunii HOM05D004633 ORTHO05D005503 2.6e-15 86.3 181 30.4
Cc07_g06330 Coffea canephora HOM05D004633 ORTHO05D005503 7.6e-15 84.7 57 61.4
MCO16G071 Micromonas commoda HOM05D004633 ORTHO05D005503 5.4e-13 78.6 138 34.8
PGSC0003DMG400039086 Solanum tuberosum HOM05D004633 ORTHO05D017134 6.2e-09 65.1 55 58.2


User provided reference genes

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