Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2080 Trifolium pratense HOM05D000215 ORTHO05D008904 4.0e-51 204.5 106 100.0
Medtr5g083030 Medicago truncatula HOM05D000215 ORTHO05D008904 2.6e-18 95.5 109 51.4
TPR.G25614 Trifolium pratense HOM05D000215 ORTHO05D008904 4.4e-18 94.7 109 51.4
Psat2g030880 Pisum sativum HOM05D000215 ORTHO05D008904 4.9e-17 91.3 79 60.8
Phvul.008G222100 Phaseolus vulgaris HOM05D000215 ORTHO05D008904 1.4e-16 89.7 99 51.5
VMungo0647G1728 Vigna mungo HOM05D000215 ORTHO05D008904 3.2e-16 88.6 114 49.1
Ca_05979_v3 Cicer arietinum L. HOM05D000215 ORTHO05D008904 2.1e-15 85.9 114 46.5
Nitab4.5_0000969g0040 Nicotiana tabacum HOM05D000215 ORTHO05D008904 4.6e-15 84.7 60 63.3
DCAR_028588 Daucus carota HOM05D000215 ORTHO05D008904 7.8e-15 84.0 61 60.7
Glyma.02G264200 Glycine max HOM05D000215 ORTHO05D008904 7.8e-15 84.0 114 44.7
Nitab4.5_0000058g0270 Nicotiana tabacum HOM05D000215 ORTHO05D008904 1.0e-14 83.6 60 63.3
Peaxi162Scf00284g00067 Petunia axillaris HOM05D000215 ORTHO05D008904 1.7e-14 82.8 61 59.0
Lj1P959T30 Lonicera japonica HOM05D000215 ORTHO05D008904 2.3e-14 82.4 61 59.0
arahy.Tifrunner.gnm1.ann1.6FWF4F Arachis hypogaea HOM05D000215 ORTHO05D008904 3.0e-14 82.0 86 53.5
arahy.Tifrunner.gnm1.ann1.KX6XMY Arachis hypogaea HOM05D000215 ORTHO05D008904 3.0e-14 82.0 86 53.5
LjContig00357g0010556 Lotus japonicus HOM05D000215 ORTHO05D008904 3.0e-14 82.0 56 69.6
Nitab4.5_0000273g0190 Nicotiana tabacum HOM05D000215 ORTHO05D008904 3.0e-14 82.0 60 61.7
Lj6g0005826 Lotus japonicus HOM05D000215 ORTHO05D008904 5.1e-14 81.3 77 51.9
Lalb_Chr10g0105221 Lupinus albus HOM05D000215 ORTHO05D008904 6.6e-14 80.9 86 52.3
Eucgr.J00184 Eucalyptus grandis HOM05D000215 ORTHO05D008904 8.6e-14 80.5 113 43.4
TAR623G0627 Trochodendron aralioides HOM05D000215 ORTHO05D008904 8.6e-14 80.5 79 46.8
Atru.chr12.86 Acer truncatum HOM05D000215 ORTHO05D008904 1.1e-13 80.1 58 63.8
Aqoxy4G02432 Aquilegia oxysepala HOM05D000215 ORTHO05D008904 1.1e-13 80.1 61 55.7
Hma1.2p1_0523F.1_g172090 Hydrangea macrophylla HOM05D000215 ORTHO05D008904 1.1e-13 80.1 73 50.7
ClCG11G006020 Citrullus lanatus HOM05D000215 ORTHO05D008904 1.5e-13 79.7 79 49.4
CSS0009874 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D008904 1.9e-13 79.3 88 48.9
MELO3C008310.2 Cucumis melo HOM05D000215 ORTHO05D008904 1.9e-13 79.3 79 49.4
Manes.07G132300 Manihot esculenta HOM05D000215 ORTHO05D008904 2.5e-13 79.0 88 46.6
COL.COLO4_25771 Corchorus olitorius HOM05D000215 ORTHO05D008904 3.3e-13 78.6 58 60.3
PGR044G2590 Punica granatum HOM05D000215 ORTHO05D008904 3.3e-13 78.6 83 49.4
TWI09G1340 Tripterygium wilfordii HOM05D000215 ORTHO05D008904 3.3e-13 78.6 79 54.4
CSS0046513 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D008904 4.3e-13 78.2 79 49.4
CsaV3_6G001940 Cucumis sativus L. HOM05D000215 ORTHO05D008904 4.3e-13 78.2 79 48.1
Solyc06g051090.3 Solanum lycopersicum HOM05D000215 ORTHO05D008904 4.3e-13 78.2 59 55.9
MBI03_g03960_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D008904 7.3e-13 77.4 61 54.1
Potri.008G071600 Populus trichocarpa HOM05D000215 ORTHO05D008904 7.3e-13 77.4 61 59.0
Dinv21756 Davidia involucrata HOM05D000215 ORTHO05D008904 1.2e-12 76.6 86 46.5
ECA238G2085 Erigeron canadensis HOM05D000215 ORTHO05D008904 1.2e-12 76.6 59 57.6
Cc02_g06190 Coffea canephora HOM05D000215 ORTHO05D008904 1.6e-12 76.3 58 58.6
Duzib114G0413 Durio zibethinus HOM05D000215 ORTHO05D008904 1.6e-12 76.3 79 51.9
Gohir.D10G251000 Gossypium hirsutum HOM05D000215 ORTHO05D008904 1.6e-12 76.3 58 60.3
Gorai.011G291400 Gossypium raimondii HOM05D000215 ORTHO05D008904 1.6e-12 76.3 58 60.3
Gohir.A10G239100 Gossypium hirsutum HOM05D000215 ORTHO05D008904 2.1e-12 75.9 58 58.6
Gohir.A10G239150 Gossypium hirsutum HOM05D000215 ORTHO05D008904 2.1e-12 75.9 58 58.6
QL08p063528 Quercus lobata HOM05D000215 ORTHO05D008904 2.1e-12 75.9 58 56.9
Sabra08G0052900 Salix brachista HOM05D000215 ORTHO05D008904 2.1e-12 75.9 61 55.7
Sopen06g016910 Solanum pennellii HOM05D000215 ORTHO05D008904 2.1e-12 75.9 59 54.2
Ciclev10033932m.g Citrus clementina HOM05D000215 ORTHO05D008904 3.6e-12 75.1 88 47.7
Nitab4.5_0002197g0040 Nicotiana tabacum HOM05D000215 ORTHO05D008904 3.6e-12 75.1 59 57.6
Nitab4.5_0008482g0040 Nicotiana tabacum HOM05D000215 ORTHO05D008904 3.6e-12 75.1 60 56.7
PGSC0003DMG400030026 Solanum tuberosum HOM05D000215 ORTHO05D008904 3.6e-12 75.1 58 56.9
Lsat_1_v5_gn_2_123761 Lactuca sativa HOM05D000215 ORTHO05D008904 4.7e-12 74.7 58 58.6
Thecc.10G012800 Theobroma cacao HOM05D000215 ORTHO05D008904 6.2e-12 74.3 58 58.6
GSVIVG01032778001 Vitis vinifera HOM05D000215 ORTHO05D008904 6.2e-12 74.3 61 55.7
vmacro10024 Vaccinium macrocarpon HOM05D000215 ORTHO05D008904 1.1e-11 73.6 61 59.0
Potri.010G185900 Populus trichocarpa HOM05D000215 ORTHO05D008904 1.8e-11 72.8 54 61.1
FvH4_7g24820 Fragaria vesca HOM05D000215 ORTHO05D008904 2.3e-11 72.4 54 61.1
FAN01G2150 Fragaria x ananassa HOM05D000215 ORTHO05D008904 2.3e-11 72.4 54 61.1
FAN06G0911 Fragaria x ananassa HOM05D000215 ORTHO05D008904 2.3e-11 72.4 54 61.1
FAN10G0032 Fragaria x ananassa HOM05D000215 ORTHO05D008904 2.3e-11 72.4 54 61.1
RcHm_v2.0_Chr1g0370691 Rosa chinensis HOM05D000215 ORTHO05D008904 2.3e-11 72.4 54 61.1
Cpa.g.sc19.150 Carica papaya HOM05D000215 ORTHO05D008904 3.1e-11 72.0 58 55.2
MBI15_g40752_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D008904 3.1e-11 72.0 58 53.4
Migut.F00658 Erythranthe guttata HOM05D000215 ORTHO05D008904 4.0e-11 71.6 56 57.1
FAN03G2040 Fragaria x ananassa HOM05D000215 ORTHO05D008904 4.0e-11 71.6 54 61.1
Duzib106G0821 Durio zibethinus HOM05D000215 ORTHO05D008904 6.8e-11 70.9 58 55.2
SalBow5G2272 Salvia bowleyana HOM05D000215 ORTHO05D008904 6.8e-11 70.9 61 55.7
Rhsim09G0179200 Rhododendron simsii HOM05D000215 ORTHO05D008904 8.9e-11 70.5 86 47.7
Sabra10G0143200 Salix brachista HOM05D000215 ORTHO05D008904 8.9e-11 70.5 75 52.0
MD07G1224800 Malus domestica HOM05D000215 ORTHO05D008904 1.2e-10 70.1 58 56.9
Prupe.2G253400 Prunus persica HOM05D000215 ORTHO05D008904 1.2e-10 70.1 80 45.0
HPP92_019013 Vanilla planifolia HOM05D000215 ORTHO05D008904 1.2e-10 70.1 54 57.4
HPP92_019098 Vanilla planifolia HOM05D000215 ORTHO05D008904 1.2e-10 70.1 54 57.4
MD01G1156100 Malus domestica HOM05D000215 ORTHO05D008904 2.0e-10 69.3 58 55.2
ATR0174G028 Amborella trichopoda HOM05D000215 ORTHO05D008904 3.4e-10 68.6 58 48.3
CiPaw.02G194500 Carya illinoinensis HOM05D000215 ORTHO05D008904 4.4e-10 68.2 58 51.7
Cfa001294 Carpinus fangiana HOM05D000215 ORTHO05D008904 2.2e-09 65.9 82 39.0
AUR62012276 Chenopodium quinoa HOM05D000215 ORTHO05D008904 2.9e-09 65.5 62 50.0
Haze_17255 Corylus avellana HOM05D000215 ORTHO05D008904 2.9e-09 65.5 82 40.2
PSO170G5707 Papaver somniferum HOM05D000215 ORTHO05D008904 2.9e-09 65.5 84 41.7
AUR62022919 Chenopodium quinoa HOM05D000215 ORTHO05D008904 3.8e-09 65.1 62 48.4
Sc10g0002510 Simmondsia chinensis HOM05D000215 ORTHO05D008904 1.9e-08 62.8 74 40.5
PSO017G5974 Papaver somniferum HOM05D000215 ORTHO05D008904 3.2e-08 62.0 84 42.9
Pp3c24_4740 Physcomitrium patens HOM05D000215 ORTHO05D008904 1.6e-07 59.7 59 49.2
Ah.10g036350 Amaranthus hybridus HOM05D000215 ORTHO05D008904 2.7e-07 58.9 62 46.8
Lalb_Chr07g0186221 Lupinus albus HOM05D000215 ORTHO05D002239 2.7e-07 58.9 65 46.2
Oeu063314.1 Olea europaea HOM05D001760 ORTHO05D001691 2.7e-07 58.9 59 45.8
RcHm_v2.0_Chr6g0247501 Rosa chinensis HOM05D000693 ORTHO05D001102 2.7e-07 58.9 57 49.1
PSO017G6701 Papaver somniferum HOM05D000215 ORTHO05D002239 4.6e-07 58.2 54 50.0
SEGI_27013 Sequoiadendron giganteum HOM05D000215 ORTHO05D002239 6.0e-07 57.8 59 44.1
SEGI_31221 Sequoiadendron giganteum HOM05D000215 ORTHO05D002239 7.8e-07 57.4 56 46.4
MELO3C013502.2 Cucumis melo HOM05D000215 ORTHO05D004644 1.0e-06 57.0 53 50.9
DCAR_005164 Daucus carota HOM05D000215 ORTHO05D002239 1.0e-06 57.0 59 45.8
Lsat_1_v5_gn_9_8321 Lactuca sativa HOM05D001760 ORTHO05D001691 1.0e-06 57.0 57 47.4
PSO170G4222 Papaver somniferum HOM05D000215 ORTHO05D002239 1.0e-06 57.0 54 50.0
Pp3c20_16680 Physcomitrium patens HOM05D000215 ORTHO05D008904 1.0e-06 57.0 59 45.8
SMO367G1238 Selaginella moellendorffii HOM05D000215 ORTHO05D008904 1.0e-06 57.0 80 40.0
AagrBONN_evm.TU.Sc2ySwM_228.2255 Anthoceros agrestis HOM05D000215 ORTHO05D008904 1.3e-06 56.6 54 50.0
SGA_v2.0_scaffold1G00094 Striga asiatica HOM05D000215 ORTHO05D002239 1.3e-06 56.6 59 47.5
arahy.Tifrunner.gnm1.ann1.579CME Arachis hypogaea HOM05D000215 ORTHO05D002239 1.7e-06 56.2 59 44.1
arahy.Tifrunner.gnm1.ann1.LM2DEJ Arachis hypogaea HOM05D000215 ORTHO05D002239 1.7e-06 56.2 59 44.1
Pp3c13_16440 Physcomitrium patens HOM05D000215 ORTHO05D002239 1.7e-06 56.2 60 46.7
EL10Ac2g04870 Beta vulgaris HOM05D000215 ORTHO05D008904 2.3e-06 55.8 59 44.1
COL.COLO4_31220 Corchorus olitorius HOM05D000215 ORTHO05D002239 2.3e-06 55.8 61 44.3
Dinv32330 Davidia involucrata HOM05D000215 ORTHO05D002239 2.3e-06 55.8 59 44.1
SMO146G0291 Selaginella moellendorffii HOM05D000215 ORTHO05D008904 2.3e-06 55.8 57 45.6
CSS0004229 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 3.0e-06 55.5 59 45.8
CSS0018180 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 3.0e-06 55.5 59 45.8
CsaV3_6G010170 Cucumis sativus L. HOM05D000215 ORTHO05D004644 3.0e-06 55.5 53 49.1
Oeu060184.1 Olea europaea HOM05D000215 ORTHO05D002239 3.0e-06 55.5 56 44.6
ECA247G1781 Erigeron canadensis HOM05D001760 ORTHO05D001691 3.9e-06 55.1 57 43.9
Migut.M01002 Erythranthe guttata HOM05D000215 ORTHO05D002239 3.9e-06 55.1 59 42.4
Nitab4.5_0000470g0020 Nicotiana tabacum HOM05D001760 ORTHO05D001691 3.9e-06 55.1 91 36.3
SGA_v2.0_scaffold106G30606 Striga asiatica HOM05D000215 ORTHO05D002239 3.9e-06 55.1 59 44.1
Potri.005G225400 Populus trichocarpa HOM05D001760 ORTHO05D001691 5.1e-06 54.7 57 47.4
SMO141G0177 Selaginella moellendorffii HOM05D000215 ORTHO05D008904 5.1e-06 54.7 57 45.6
EL10Ac7g17067 Beta vulgaris HOM05D000215 ORTHO05D002239 6.6e-06 54.3 54 48.1
Ciclev10014430m.g Citrus clementina HOM05D000215 ORTHO05D002239 6.6e-06 54.3 61 41.0
Lj4A10G78 Lonicera japonica HOM05D000215 ORTHO05D004644 8.6e-06 53.9 54 42.6
Lj1g0009550 Lotus japonicus HOM05D001760 ORTHO05D001691 8.6e-06 53.9 54 48.1
Oeu039872.1 Olea europaea HOM05D000215 ORTHO05D002239 8.6e-06 53.9 60 41.7
QL05p050063 Quercus lobata HOM05D000215 ORTHO05D002239 8.6e-06 53.9 61 42.6
SGA_v2.0_scaffold87G27030 Striga asiatica HOM05D000215 ORTHO05D003454 8.6e-06 53.9 72 41.7
TWI09G0329 Tripterygium wilfordii HOM05D000215 ORTHO05D002239 8.6e-06 53.9 59 44.1
GSVIVG01023893001 Vitis vinifera HOM05D000215 ORTHO05D004644 8.6e-06 53.9 52 46.2


User provided reference genes

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