Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 0.0e+00 1289.2 677 100.0
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 0.0e+00 1193.3 677 93.4
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 0.0e+00 1142.1 678 89.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 0.0e+00 1131.3 679 89.0
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 0.0e+00 1101.7 675 86.5
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 0.0e+00 1095.9 681 84.6
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 0.0e+00 1081.2 674 85.5
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 3.4e-305 1051.2 626 90.3
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.6e-297 1025.0 734 77.4
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 4.9e-296 1020.8 615 88.6
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-290 1002.3 675 80.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.6e-283 979.2 671 78.4
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.4e-282 975.3 674 78.3
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.3e-280 969.5 672 76.6
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 3.5e-278 961.4 672 73.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.8e-275 951.0 672 74.9
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.2e-273 946.4 674 76.6
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.2e-273 946.4 674 76.6
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.0e-272 943.3 672 77.7
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.2e-270 936.4 671 77.2
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.0e-269 931.8 699 69.1
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.7e-269 930.2 671 75.0
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.1e-268 929.9 673 74.3
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 1.0e-264 916.8 694 73.8
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.2e-264 915.6 675 74.1
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 6.5e-264 914.1 681 72.5
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.2e-263 911.8 673 74.4
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.2e-262 909.8 675 74.8
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.9e-261 904.8 639 75.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 8.7e-261 903.7 671 75.0
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.1e-260 903.3 672 73.8
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.5e-260 902.1 629 75.8
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 3.3e-260 901.7 670 73.7
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 2.0e-257 892.5 672 72.8
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.3e-256 889.8 672 74.4
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.2e-254 883.2 674 72.8
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.6e-254 882.9 674 71.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 3.9e-253 878.2 675 72.0
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 6.7e-253 877.5 625 77.4
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 6.7e-253 877.5 672 72.3
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 3.3e-252 875.2 674 72.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.3e-251 873.2 674 71.8
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 6.9e-250 867.5 666 72.8
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.6e-249 865.5 676 72.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.9e-247 859.4 675 70.5
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.2e-245 851.3 683 70.0
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 3.3e-244 848.6 658 72.5
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.9e-241 837.8 638 71.2
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.2e-240 835.9 683 68.8
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.9e-240 835.5 790 62.5
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.5e-239 833.2 671 69.9
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 5.5e-239 831.2 679 70.3
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.2e-238 830.1 677 70.5
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.1e-238 827.8 641 70.7
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.4e-237 826.6 680 68.5
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.6e-236 822.4 678 67.6
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.7e-233 812.4 668 66.8
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.9e-232 808.9 675 67.9
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 5.5e-231 804.7 682 67.4
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.0e-229 798.9 585 76.2
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.7e-225 785.8 561 76.8
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.0e-224 783.9 643 68.1
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 3.2e-223 778.9 658 66.4
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 8.0e-222 774.2 677 66.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 5.2e-221 771.5 653 67.1
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 1.5e-220 770.0 678 66.4
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 4.4e-220 768.5 673 66.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 7.5e-220 767.7 676 65.2
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 9.8e-220 767.3 675 63.0
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.8e-220 767.3 608 71.2
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.3e-219 766.9 682 65.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.5e-215 752.7 672 65.2
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 4.7e-214 748.4 671 66.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.4e-213 746.9 738 57.6
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 2.3e-213 746.1 672 64.4
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 5.7e-212 741.5 684 63.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 5.7e-212 741.5 673 63.7
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 5.7e-212 741.5 673 63.7
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 4.9e-211 738.4 675 63.6
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.4e-210 736.1 673 63.4
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.4e-210 736.1 673 63.4
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.7e-209 732.6 677 63.1
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 5.0e-208 728.4 673 63.0
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 5.0e-208 728.4 673 63.0
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.1e-205 720.7 660 64.7
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.4e-205 720.3 700 61.1
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 4.4e-204 715.3 546 73.3
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 7.0e-202 708.0 691 60.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 9.2e-202 707.6 526 72.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.9e-195 686.0 629 64.2
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 4.1e-194 682.2 498 75.5
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 4.6e-193 678.7 671 56.6
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.9e-191 673.3 605 61.2
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 3.4e-188 662.5 669 56.1
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.1e-186 657.5 456 78.3
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 5.4e-186 655.2 675 55.7
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 5.1e-184 648.7 654 60.1
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.1e-182 643.3 674 57.3
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.7e-182 642.1 621 58.8
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 4.0e-181 639.0 610 61.6
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.2e-171 606.7 714 50.1
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.6e-169 600.5 671 54.7
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 5.1e-168 595.5 469 66.5
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 9.0e-165 584.7 667 55.3
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.4e-159 565.1 408 77.0
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 3.5e-153 546.2 661 52.5
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 8.2e-150 535.0 614 50.0
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.6e-137 493.0 440 65.7
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 9.7e-135 485.0 618 49.0
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.3e-133 479.2 684 46.5
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 5.7e-127 459.1 596 48.5
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.6e-124 451.1 506 55.9
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 5.0e-115 419.5 556 47.3
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.4e-111 406.8 691 41.5
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.0e-107 395.2 310 77.4
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 4.0e-104 383.3 279 83.2
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.5e-98 364.8 553 44.8
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 7.1e-77 292.7 312 60.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.6e-75 285.8 295 56.6
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.1e-69 266.2 201 64.2
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.0e-67 260.8 182 85.2
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.3e-64 250.0 347 39.8
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 7.6e-63 246.1 310 54.8
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.2e-61 240.7 324 44.4
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.5e-58 231.9 292 53.8
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.0e-56 223.8 290 41.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.3e-54 218.8 222 68.5
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.6e-52 211.8 168 63.1
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-51 208.8 191 75.9
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 1.1e-50 205.7 277 52.0
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 4.5e-47 193.7 140 75.0
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.9e-46 191.0 209 46.9
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.3e-42 177.6 103 93.2
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 8.2e-33 146.4 278 34.9
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-31 142.5 83 79.5
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.0e-30 139.4 105 70.5
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 3.8e-22 110.9 68 76.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.5e-22 109.8 128 40.6
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.6e-20 105.5 91 52.7
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.6e-20 105.5 91 52.7
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-20 105.5 113 54.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 5.1e-19 100.5 308 27.6
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 2.0e-18 98.6 59 78.0
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 2.4e-16 91.7 177 33.3
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 2.0e-15 88.6 51 84.3
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.3e-14 85.9 74 58.1
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 3.2e-13 81.3 53 73.6
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.5e-10 72.4 53 60.4
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 1.3e-09 69.3 119 40.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.0e-08 63.5 69 47.8
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.0e-08 63.5 69 47.8
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 7.7e-07 60.1 130 30.8
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 2.9e-06 58.2 66 50.0


User provided reference genes

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