Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20765 Trifolium pratense HOM05D007525 ORTHO05D003398 2.3e-59 231.9 106 100.0
TPR.G34652 Trifolium pratense HOM05D007525 ORTHO05D003398 2.8e-36 155.2 76 89.5
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 8.1e-20 100.5 51 86.3
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 4.4e-18 94.7 51 80.4
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 5.8e-18 94.4 51 80.4
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 1.9e-16 89.4 51 72.5
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 1.9e-16 89.4 51 74.5
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 1.2e-15 86.7 49 77.6
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 3.0e-14 82.0 51 70.6
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 8.1e-12 73.9 68 55.9
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 1.3e-09 66.6 40 72.5
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 3.8e-09 65.1 40 70.0
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 4.9e-09 64.7 40 72.5
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 6.4e-09 64.3 36 75.0
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 6.4e-09 64.3 37 73.0
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 8.4e-09 63.9 41 65.9
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 8.4e-09 63.9 40 70.0
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 8.4e-09 63.9 40 70.0
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 8.4e-09 63.9 40 70.0
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.1e-08 63.5 36 75.0
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 1.1e-08 63.5 35 74.3
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 1.4e-08 63.2 36 75.0
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 1.4e-08 63.2 37 73.0
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 1.9e-08 62.8 36 69.4
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 2.4e-08 62.4 37 70.3
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 2.4e-08 62.4 37 70.3
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 3.2e-08 62.0 40 65.0
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 3.2e-08 62.0 36 72.2
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 4.1e-08 61.6 40 67.5
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 4.1e-08 61.6 40 65.0
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 4.1e-08 61.6 40 67.5
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 4.1e-08 61.6 36 69.4
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 5.4e-08 61.2 36 66.7
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 5.4e-08 61.2 36 69.4
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 5.4e-08 61.2 36 66.7
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 5.4e-08 61.2 36 66.7
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 7.1e-08 60.8 36 66.7
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 7.1e-08 60.8 36 66.7
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 7.1e-08 60.8 35 71.4
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 7.1e-08 60.8 78 44.9
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 9.2e-08 60.5 40 67.5
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 9.2e-08 60.5 40 62.5
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 9.2e-08 60.5 40 65.0
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 1.2e-07 60.1 40 65.0
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 1.2e-07 60.1 36 69.4
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 1.2e-07 60.1 40 67.5
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 1.6e-07 59.7 36 66.7
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 2.1e-07 59.3 40 60.0
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 2.1e-07 59.3 40 65.0
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 2.7e-07 58.9 34 73.5
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 2.7e-07 58.9 36 63.9
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 2.7e-07 58.9 36 63.9
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 2.7e-07 58.9 36 63.9
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 2.7e-07 58.9 36 63.9
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 2.7e-07 58.9 36 63.9
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 2.7e-07 58.9 36 69.4
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 4.6e-07 58.2 36 63.9
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 6.0e-07 57.8 40 65.0
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.0e-07 57.8 40 65.0
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 7.8e-07 57.4 37 64.9
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 7.8e-07 57.4 40 65.0
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-07 57.4 40 65.0
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-07 57.4 40 65.0
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 7.8e-07 57.4 36 63.9
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 1.0e-06 57.0 33 72.7
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 1.0e-06 57.0 33 72.7
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 1.0e-06 57.0 35 68.6
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 1.0e-06 57.0 35 65.7
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 1.7e-06 56.2 35 68.6
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 1.7e-06 56.2 37 64.9
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 1.7e-06 56.2 35 65.7
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 2.3e-06 55.8 35 65.7
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 2.3e-06 55.8 40 62.5
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 3.9e-06 55.1 35 68.6
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 3.9e-06 55.1 35 62.9
SEGI_20701 Sequoiadendron giganteum HOM05D007525 ORTHO05D003398 3.9e-06 55.1 40 55.0
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 3.9e-06 55.1 35 65.7
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 6.6e-06 54.3 35 65.7
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 8.6e-06 53.9 33 66.7
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 8.6e-06 53.9 35 62.9


User provided reference genes

Program Settings