Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 5.5e-122 441.0 230 100.0
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 1.5e-108 396.4 233 89.3
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 2.5e-103 379.0 234 88.5
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 8.2e-94 347.4 226 81.9
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 8.2e-94 347.4 233 78.5
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 1.2e-92 343.6 233 75.5
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 2.7e-89 332.4 230 78.7
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 6.1e-89 331.3 233 78.1
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.0e-88 330.5 226 76.5
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 8.8e-88 327.4 233 74.2
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 9.7e-87 323.9 226 75.7
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 9.4e-82 307.4 232 69.8
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.8e-80 303.1 233 67.4
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 2.6e-79 299.3 233 66.5
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 4.4e-79 298.5 233 67.0
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 4.4e-79 298.5 233 67.4
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 2.2e-78 296.2 233 68.2
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 3.7e-78 295.4 233 67.8
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 8.2e-78 294.3 233 67.8
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 3.1e-77 292.4 232 67.2
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 3.1e-77 292.4 233 67.4
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 2.7e-76 289.3 233 64.4
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 7.7e-76 287.7 230 65.2
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 7.7e-76 287.7 230 65.2
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 6.5e-75 284.6 230 63.5
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 1.1e-74 283.9 233 64.8
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 1.5e-74 283.5 230 63.0
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 7.2e-74 281.2 230 63.5
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.2e-73 280.4 230 65.2
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 2.7e-73 279.3 233 63.1
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 3.6e-73 278.9 233 62.7
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 1.4e-72 276.9 230 63.5
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 2.3e-72 276.2 232 61.6
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 2.3e-72 276.2 230 66.1
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 3.0e-72 275.8 230 61.7
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 4.0e-72 275.4 232 63.8
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 5.2e-72 275.0 230 61.3
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 6.8e-72 274.6 230 61.7
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 8.8e-72 274.2 231 63.2
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 1.2e-71 273.9 230 60.4
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.2e-71 273.9 230 61.7
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.2e-71 273.9 228 66.2
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 2.6e-71 272.7 229 62.9
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 3.4e-71 272.3 232 60.8
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 5.7e-71 271.6 228 64.9
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 1.7e-70 270.0 232 60.8
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 2.2e-70 269.6 230 60.9
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 2.8e-70 269.2 233 60.5
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.7e-70 268.9 230 63.0
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 4.8e-70 268.5 230 61.3
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 6.3e-70 268.1 230 60.9
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 1.1e-69 267.3 233 60.5
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.1e-69 267.3 235 63.4
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 1.4e-69 266.9 230 59.6
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.8e-69 266.5 230 60.4
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 1.8e-69 266.5 231 61.0
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 7.0e-69 264.6 227 63.4
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 1.2e-68 263.8 230 61.3
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 2.0e-68 263.1 230 60.9
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 6.6e-67 258.1 230 60.9
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 8.6e-67 257.7 223 60.5
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 1.1e-66 257.3 223 61.0
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.5e-66 256.9 223 61.4
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 2.5e-66 256.1 230 60.4
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 3.3e-66 255.8 230 60.0
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 9.5e-66 254.2 231 58.4
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 2.8e-65 252.7 223 60.5
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 4.7e-65 251.9 225 57.8
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 8.0e-65 251.1 223 60.1
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 4.0e-64 248.8 230 57.4
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 8.9e-64 247.7 230 57.8
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 3.4e-63 245.7 234 56.8
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 7.5e-63 244.6 230 56.5
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.3e-62 243.8 230 54.8
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 4.9e-62 241.9 230 54.3
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 4.1e-61 238.8 242 55.8
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 4.1e-61 238.8 230 55.2
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 9.2e-61 237.7 230 55.2
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.6e-60 236.9 229 55.0
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 5.9e-60 235.0 233 56.2
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.0e-59 234.2 232 54.7
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 1.3e-59 233.8 231 54.5
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 1.7e-59 233.4 227 56.8
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.7e-59 233.4 223 55.6
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 2.3e-59 233.0 213 58.7
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 3.9e-59 232.3 231 57.1
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 5.0e-59 231.9 283 49.8
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 6.6e-59 231.5 239 55.6
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 6.6e-59 231.5 218 57.3
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 1.1e-58 230.7 226 58.8
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 2.5e-58 229.6 252 52.4
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 3.4e-55 219.2 212 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 4.1e-53 212.2 235 48.5
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 3.5e-52 209.1 256 47.7
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.1e-49 199.9 231 50.2
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 2.1e-49 199.9 232 46.6
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 2.8e-49 199.5 237 44.7
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 3.6e-49 199.1 167 65.3
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.1e-48 197.6 223 49.8
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 4.4e-47 192.2 230 47.4
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 6.4e-46 188.3 223 49.3
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 6.4e-46 188.3 220 45.5
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.1e-45 187.6 232 45.7
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.4e-45 187.2 191 53.9
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.9e-45 186.8 168 63.7
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.3e-43 180.6 226 46.0
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 5.6e-42 175.3 162 58.6
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 1.2e-41 174.1 221 47.1
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.0e-39 166.8 159 56.0
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 2.9e-30 136.3 109 60.6
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 1.2e-28 131.0 144 55.6
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-27 127.1 263 32.3
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 8.7e-27 124.8 223 36.3
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 7.3e-26 121.7 87 65.5
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 1.6e-25 120.6 92 60.9
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 4.8e-25 119.0 106 58.5
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.4e-24 116.7 131 51.1
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.9e-24 115.2 193 39.9
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 2.4e-21 106.7 274 28.5
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.3e-17 94.4 74 68.9
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.3e-17 94.4 91 53.8
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 1.3e-17 94.4 91 53.8
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 1.3e-17 94.4 89 53.9
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 8.1e-17 91.7 197 33.5
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 9.0e-16 88.2 169 36.7
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.0e-16 88.2 169 36.7
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-15 87.8 91 50.5
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 7.6e-15 85.1 63 66.7
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 1.9e-13 80.5 91 57.1
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 7.1e-13 78.6 60 61.7
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 3.0e-11 73.2 77 46.8
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 9.6e-10 68.2 61 60.7
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 1.6e-09 67.4 74 55.4


User provided reference genes

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