Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2060 Trifolium pratense HOM05D000190 ORTHO05D000113 7.1e-60 233.8 123 100.0
Psat3g090000 Pisum sativum HOM05D000190 ORTHO05D000113 7.7e-14 80.9 42 95.2
Medtr2g006280 Medicago truncatula HOM05D000190 ORTHO05D000113 2.9e-13 79.0 42 92.9
A09p64800 Brassica napus HOM05D000190 ORTHO05D000113 1.1e-12 77.0 42 88.1
BolC8t52378H Brassica oleracea HOM05D000190 ORTHO05D000113 1.1e-12 77.0 42 88.1
BraA09t41815Z Brassica rapa HOM05D000190 ORTHO05D000113 1.1e-12 77.0 42 88.1
Carub.0001s1058 Capsella rubella HOM05D000190 ORTHO05D000113 1.4e-12 76.6 42 88.1
CARHR011210 Cardamine hirsuta HOM05D000190 ORTHO05D000113 1.9e-12 76.3 42 85.7
Aa31LG1G3890 Aethionema arabicum HOM05D000190 ORTHO05D000113 2.5e-12 75.9 42 85.7
AT1G11000 Arabidopsis thaliana HOM05D000190 ORTHO05D000113 2.5e-12 75.9 42 85.7
C08p48390 Brassica napus HOM05D000190 ORTHO05D000113 2.5e-12 75.9 42 85.7
Thhalv10007202m.g Eutrema salsugineum HOM05D000190 ORTHO05D000113 2.5e-12 75.9 42 85.7
Sp1g09700 Schrenkiella parvula HOM05D000190 ORTHO05D000113 2.5e-12 75.9 42 85.7
THA.LOC104809616 Tarenaya hassleriana HOM05D000190 ORTHO05D000113 7.2e-12 74.3 42 85.7
Ca_00057_v3 Cicer arietinum L. HOM05D000190 ORTHO05D000113 9.4e-12 73.9 42 88.1
arahy.Tifrunner.gnm1.ann1.GMF3XI Arachis hypogaea HOM05D000190 ORTHO05D000113 1.0e-10 70.5 42 81.0
arahy.Tifrunner.gnm1.ann1.SY37LP Arachis hypogaea HOM05D000190 ORTHO05D000113 1.0e-10 70.5 42 81.0
Glyma.08G188600 Glycine max HOM05D000190 ORTHO05D000113 1.0e-10 70.5 52 69.2
RcHm_v2.0_Chr7g0221021 Rosa chinensis HOM05D000190 ORTHO05D000113 1.0e-10 70.5 54 70.4
Thecc.02G089800 Theobroma cacao HOM05D000190 ORTHO05D000113 1.0e-10 70.5 54 66.7
CANSAT11G1779 Cannabis sativa HOM05D000190 ORTHO05D000113 1.4e-10 70.1 42 83.3
Dinv24308 Davidia involucrata HOM05D000190 ORTHO05D000113 1.8e-10 69.7 42 83.3
Gohir.D02G213800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 1.8e-10 69.7 45 75.6
Gorai.005G241700 Gossypium raimondii HOM05D000190 ORTHO05D000113 1.8e-10 69.7 45 75.6
Lj6g0024747 Lotus japonicus HOM05D000190 ORTHO05D000113 1.8e-10 69.7 41 82.9
arahy.Tifrunner.gnm1.ann1.U6KGJT Arachis hypogaea HOM05D000190 ORTHO05D000113 3.0e-10 68.9 42 78.6
FvH4_5g28810 Fragaria vesca HOM05D000190 ORTHO05D000113 3.0e-10 68.9 42 83.3
FAN04G2027 Fragaria x ananassa HOM05D000190 ORTHO05D000113 3.0e-10 68.9 42 83.3
FAN13G1232 Fragaria x ananassa HOM05D000190 ORTHO05D000113 3.0e-10 68.9 42 83.3
FAN18G3244 Fragaria x ananassa HOM05D000190 ORTHO05D000113 3.0e-10 68.9 42 83.3
Prupe.1G574000 Prunus persica HOM05D000190 ORTHO05D000113 3.9e-10 68.6 42 83.3
Sed0012752 Sechium edule HOM05D000190 ORTHO05D000113 3.9e-10 68.6 50 70.0
VMungo0540G1527 Vigna mungo HOM05D000190 ORTHO05D000113 3.9e-10 68.6 42 81.0
Atru.chr6.677 Acer truncatum HOM05D000190 ORTHO05D000113 5.1e-10 68.2 39 82.1
Rhsim11G0127200 Rhododendron simsii HOM05D000190 ORTHO05D000113 5.1e-10 68.2 42 81.0
GSVIVG01023344001 Vitis vinifera HOM05D000190 ORTHO05D000113 5.1e-10 68.2 38 89.5
FAN08G1394 Fragaria x ananassa HOM05D000190 ORTHO05D000113 6.7e-10 67.8 42 81.0
Duzib052G0323 Durio zibethinus HOM05D000190 ORTHO05D000113 8.8e-10 67.4 42 76.2
COL.COLO4_11762 Corchorus olitorius HOM05D000190 ORTHO05D000113 1.1e-09 67.0 42 73.8
TAR628G0556 Trochodendron aralioides HOM05D000190 ORTHO05D000113 1.1e-09 67.0 42 83.3
MD08G1236900 Malus domestica HOM05D000190 ORTHO05D000113 1.5e-09 66.6 42 78.6
Cpa.g.sc118.35 Carica papaya HOM05D000190 ORTHO05D000113 2.0e-09 66.2 42 73.8
Lalb_Chr18g0060981 Lupinus albus HOM05D000190 ORTHO05D000113 2.0e-09 66.2 37 86.5
Sc23g0004990 Simmondsia chinensis HOM05D000190 ORTHO05D000113 2.0e-09 66.2 42 76.2
TWI59G1448 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 2.0e-09 66.2 41 75.6
ClCG05G009500 Citrullus lanatus HOM05D000190 ORTHO05D000113 2.6e-09 65.9 43 81.4
QL02p099502 Quercus lobata HOM05D000190 ORTHO05D000113 2.6e-09 65.9 42 78.6
EL10Ac6g14055 Beta vulgaris HOM05D000190 ORTHO05D000113 4.4e-09 65.1 42 76.2
vmacro01740 Vaccinium macrocarpon HOM05D000190 ORTHO05D000113 4.4e-09 65.1 41 78.0
Actinidia00194 Actinidia chinensis HOM05D000190 ORTHO05D000113 5.7e-09 64.7 42 73.8
Manes.07G020200 Manihot esculenta HOM05D000190 ORTHO05D000113 5.7e-09 64.7 39 76.9
Nn5g27533 Nelumbo nucifera HOM05D000190 ORTHO05D000113 5.7e-09 64.7 47 70.2
Potri.004G218500 Populus trichocarpa HOM05D000190 ORTHO05D000113 5.7e-09 64.7 58 58.6
arahy.Tifrunner.gnm1.ann1.FP9NCM Arachis hypogaea HOM05D000190 ORTHO05D000113 7.4e-09 64.3 42 71.4
MELO3C019435.2 Cucumis melo HOM05D000190 ORTHO05D000113 7.4e-09 64.3 38 81.6
CsaV3_3G019230 Cucumis sativus L. HOM05D000190 ORTHO05D000113 7.4e-09 64.3 38 81.6
Ciclev10003889m.g Citrus clementina HOM05D000190 ORTHO05D000113 9.7e-09 63.9 41 70.7
Eucgr.I02745 Eucalyptus grandis HOM05D000190 ORTHO05D000113 1.7e-08 63.2 50 66.0
Lj5C255T7 Lonicera japonica HOM05D000190 ORTHO05D000113 1.7e-08 63.2 42 71.4
PGR142G0399 Punica granatum HOM05D000190 ORTHO05D000113 1.7e-08 63.2 54 61.1
Actinidia39021 Actinidia chinensis HOM05D000190 ORTHO05D000113 2.2e-08 62.8 41 73.2
Sabra01G0165700 Salix brachista HOM05D000190 ORTHO05D000113 4.8e-08 61.6 58 56.9
Aqoxy6G00059 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 6.3e-08 61.2 44 70.5
CAN.G1.40 Capsicum annuum HOM05D000190 ORTHO05D000113 6.3e-08 61.2 42 71.4
Eucgr.L02996 Eucalyptus grandis HOM05D000190 ORTHO05D000113 6.3e-08 61.2 50 66.0
arahy.Tifrunner.gnm1.ann1.3S7K56 Arachis hypogaea HOM05D000190 ORTHO05D000113 1.1e-07 60.5 52 61.5
Hund12948 Selenicereus undatus HOM05D000190 ORTHO05D000113 1.1e-07 60.5 42 66.7
DCAR_029261 Daucus carota HOM05D000190 ORTHO05D000113 1.4e-07 60.1 42 64.3
Nitab4.5_0000667g0170 Nicotiana tabacum HOM05D000190 ORTHO05D000113 1.4e-07 60.1 42 69.0
Migut.N01052 Erythranthe guttata HOM05D000190 ORTHO05D000113 1.8e-07 59.7 43 65.1
Hma1.2p1_1108F.1_g257780 Hydrangea macrophylla HOM05D000190 ORTHO05D000113 1.8e-07 59.7 42 71.4
Oeu034118.1 Olea europaea HOM05D000190 ORTHO05D000113 1.8e-07 59.7 38 76.3
HPP92_009275 Vanilla planifolia HOM05D000190 ORTHO05D000113 1.8e-07 59.7 38 76.3
DCAR_006690 Daucus carota HOM05D000190 ORTHO05D000113 2.4e-07 59.3 42 64.3
PGSC0003DMG400018975 Solanum tuberosum HOM05D000190 ORTHO05D000113 2.4e-07 59.3 42 64.3
Cc02_g22820 Coffea canephora HOM05D000190 ORTHO05D000113 3.1e-07 58.9 42 69.0
HanXRQChr03g0065251 Helianthus annuus HOM05D000190 ORTHO05D000113 3.1e-07 58.9 43 60.5
SEGI_29250 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 9.1e-07 57.4 38 71.1
Solyc10g044510.2 Solanum lycopersicum HOM05D000190 ORTHO05D000113 9.1e-07 57.4 42 64.3
Sopen10g013100 Solanum pennellii HOM05D000190 ORTHO05D000113 9.1e-07 57.4 42 64.3
AUR62014234 Chenopodium quinoa HOM05D000190 ORTHO05D000113 1.2e-06 57.0 39 64.1
AUR62038462 Chenopodium quinoa HOM05D000190 ORTHO05D000113 1.2e-06 57.0 39 64.1
SGA_v2.0_scaffold42G15926 Striga asiatica HOM05D000190 ORTHO05D000113 1.2e-06 57.0 44 61.4
ECA240G2055 Erigeron canadensis HOM05D000190 ORTHO05D000113 1.5e-06 56.6 43 58.1
Lsat_1_v5_gn_9_120900 Lactuca sativa HOM05D000190 ORTHO05D000113 2.0e-06 56.2 41 61.0
Zm00001eb201210 Zea mays HOM05D000190 ORTHO05D000113 5.9e-06 54.7 37 73.0


User provided reference genes

Program Settings