Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20515 Trifolium pratense HOM05D002457 ORTHO05D005750 3.2e-86 321.6 152 100.0
Ca_16043_v3 Cicer arietinum L. HOM05D002457 ORTHO05D005750 5.3e-73 277.7 152 86.8
Psat5g051160 Pisum sativum HOM05D002457 ORTHO05D005750 7.6e-72 273.9 152 86.2
Medtr3g099370 Medicago truncatula HOM05D002457 ORTHO05D005750 4.2e-70 268.1 150 86.7
Glyma.06G101600 Glycine max HOM05D002457 ORTHO05D005750 6.7e-68 260.8 145 84.1
Lalb_Chr11g0065321 Lupinus albus HOM05D002457 ORTHO05D005750 2.4e-65 252.3 150 80.7
Phvul.009G032400 Phaseolus vulgaris HOM05D002457 ORTHO05D005750 1.0e-63 246.9 146 78.8
Lj1g0014547 Lotus japonicus HOM05D002457 ORTHO05D005750 1.0e-60 236.9 150 75.3
CiPaw.07G177900 Carya illinoinensis HOM05D002457 ORTHO05D005750 6.1e-53 211.1 150 68.7
TAR381G1131 Trochodendron aralioides HOM05D002457 ORTHO05D005750 7.9e-53 210.7 140 69.3
Nn1g05429 Nelumbo nucifera HOM05D002457 ORTHO05D005750 1.8e-52 209.5 152 66.4
PGR042G2032 Punica granatum HOM05D002457 ORTHO05D005750 3.0e-52 208.8 142 71.1
ClCG08G011220 Citrullus lanatus HOM05D002457 ORTHO05D005750 5.1e-52 208.0 142 69.7
MELO3C011038.2 Cucumis melo HOM05D002457 ORTHO05D005750 6.7e-52 207.6 142 69.7
COL.COLO4_12026 Corchorus olitorius HOM05D002457 ORTHO05D005750 2.0e-51 206.1 149 65.8
Dinv19118 Davidia involucrata HOM05D002457 ORTHO05D005750 2.0e-51 206.1 155 65.8
QL12p037399 Quercus lobata HOM05D002457 ORTHO05D005750 2.6e-51 205.7 151 69.5
QL12p038698 Quercus lobata HOM05D002457 ORTHO05D005750 2.6e-51 205.7 151 69.5
MD15G1372700 Malus domestica HOM05D002457 ORTHO05D005750 3.3e-51 205.3 150 67.3
Sed0005289 Sechium edule HOM05D002457 ORTHO05D005750 4.4e-51 204.9 142 69.7
Eucgr.F00367 Eucalyptus grandis HOM05D002457 ORTHO05D005750 1.3e-50 203.4 144 70.1
Cfa013661 Carpinus fangiana HOM05D002457 ORTHO05D005750 1.7e-50 203.0 150 66.7
TWI12G1349 Tripterygium wilfordii HOM05D002457 ORTHO05D005750 2.2e-50 202.6 150 66.0
Glyma.13G164200 Glycine max HOM05D002457 ORTHO05D005750 2.8e-50 202.2 161 66.5
Potri.002G099400 Populus trichocarpa HOM05D002457 ORTHO05D005750 2.8e-50 202.2 150 65.3
MD08G1186800 Malus domestica HOM05D002457 ORTHO05D005750 4.8e-50 201.4 150 67.3
Dinv44796 Davidia involucrata HOM05D002457 ORTHO05D005750 6.3e-50 201.1 155 65.2
Gohir.D01G115200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 6.3e-50 201.1 142 66.9
Gohir.A05G224700 Gossypium hirsutum HOM05D002457 ORTHO05D005750 8.2e-50 200.7 149 63.8
Gorai.009G234900 Gossypium raimondii HOM05D002457 ORTHO05D005750 8.2e-50 200.7 149 63.8
Gohir.A01G132300 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.8e-49 199.5 142 66.2
Gohir.D05G227200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.8e-49 199.5 149 63.1
Gorai.002G140900 Gossypium raimondii HOM05D002457 ORTHO05D005750 1.8e-49 199.5 142 66.2
Thecc.08G103800 Theobroma cacao HOM05D002457 ORTHO05D005750 1.8e-49 199.5 152 63.2
Prupe.1G521300 Prunus persica HOM05D002457 ORTHO05D005750 2.4e-49 199.1 150 66.0
CSS0003030 Camellia sinensis var. sinensis HOM05D002457 ORTHO05D005750 3.1e-49 198.7 142 67.6
CsaV3_2G029800 Cucumis sativus L. HOM05D002457 ORTHO05D005750 3.1e-49 198.7 142 67.6
Sabra02G0078000 Salix brachista HOM05D002457 ORTHO05D005750 4.1e-49 198.4 142 66.9
Thhalv10018079m.g Eutrema salsugineum HOM05D002457 ORTHO05D005750 6.9e-49 197.6 143 66.4
FAN04G0153 Fragaria x ananassa HOM05D002457 ORTHO05D005750 6.9e-49 197.6 150 64.7
GSVIVG01009071001 Vitis vinifera HOM05D002457 ORTHO05D005750 6.9e-49 197.6 150 65.3
ECA232G3235 Erigeron canadensis HOM05D002457 ORTHO05D005750 1.5e-48 196.4 153 63.4
Sc23g0000320 Simmondsia chinensis HOM05D002457 ORTHO05D005750 2.6e-48 195.7 142 66.2
Actinidia10338 Actinidia chinensis HOM05D002457 ORTHO05D005750 3.4e-48 195.3 142 66.2
Sp5g33400 Schrenkiella parvula HOM05D002457 ORTHO05D005750 3.4e-48 195.3 143 65.7
FAN13G1549 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.0e-47 193.7 150 63.3
Hund26976 Selenicereus undatus HOM05D002457 ORTHO05D005750 1.3e-47 193.4 142 64.8
Carub.0002s2518 Capsella rubella HOM05D002457 ORTHO05D005750 1.7e-47 193.0 143 67.1
Migut.N02884 Erythranthe guttata HOM05D002457 ORTHO05D005750 1.7e-47 193.0 149 63.8
FAN08G0375 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.7e-47 193.0 150 63.3
Lj4C97T15 Lonicera japonica HOM05D002457 ORTHO05D005750 1.7e-47 193.0 153 60.1
CARHR071750 Cardamine hirsuta HOM05D002457 ORTHO05D005750 2.2e-47 192.6 143 66.4
PSO210G3704 Papaver somniferum HOM05D002457 ORTHO05D005750 3.8e-47 191.8 157 59.9
MSTRG.22163 Avicennia marina HOM05D002457 ORTHO05D005750 5.0e-47 191.4 152 60.5
Cpa.g.sc36.163 Carica papaya HOM05D002457 ORTHO05D005750 5.0e-47 191.4 142 67.6
FvH4_5g36800 Fragaria vesca HOM05D002457 ORTHO05D005750 5.0e-47 191.4 142 64.8
RcHm_v2.0_Chr7g0243351 Rosa chinensis HOM05D002457 ORTHO05D005750 6.5e-47 191.0 150 64.0
AL2G38630 Arabidopsis lyrata HOM05D002457 ORTHO05D005750 8.5e-47 190.7 143 65.7
Manes.18G065400 Manihot esculenta HOM05D002457 ORTHO05D005750 8.5e-47 190.7 142 65.5
A07p43570 Brassica napus HOM05D002457 ORTHO05D005750 1.1e-46 190.3 143 65.7
BraA07t31869Z Brassica rapa HOM05D002457 ORTHO05D005750 1.1e-46 190.3 143 65.7
BolC6t40246H Brassica oleracea HOM05D002457 ORTHO05D005750 1.9e-46 189.5 143 65.7
FAN18G1557 Fragaria x ananassa HOM05D002457 ORTHO05D005750 2.5e-46 189.1 150 62.0
BcaC08g47405 Brassica carinata HOM05D002457 ORTHO05D005750 4.2e-46 188.3 143 65.0
Sopen04g029500 Solanum pennellii HOM05D002457 ORTHO05D005750 4.2e-46 188.3 143 64.3
THA.LOC104810709 Tarenaya hassleriana HOM05D002457 ORTHO05D005750 4.2e-46 188.3 142 63.4
PSO447G0244 Papaver somniferum HOM05D002457 ORTHO05D005750 5.5e-46 188.0 142 62.0
SGA_v2.0_scaffold28G11909 Striga asiatica HOM05D002457 ORTHO05D005750 5.5e-46 188.0 142 64.1
vmacro21245 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 5.5e-46 188.0 142 64.8
vmacro21299 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 5.5e-46 188.0 142 64.8
Aa31LG4G8280 Aethionema arabicum HOM05D002457 ORTHO05D005750 9.4e-46 187.2 143 63.6
BcaB03g16003 Brassica carinata HOM05D002457 ORTHO05D005750 9.4e-46 187.2 143 64.3
C06p52240 Brassica napus HOM05D002457 ORTHO05D005750 9.4e-46 187.2 143 64.3
AT1G78280 Arabidopsis thaliana HOM05D002457 ORTHO05D005750 1.2e-45 186.8 143 65.0
BcaB05g25129 Brassica carinata HOM05D002457 ORTHO05D005750 1.2e-45 186.8 143 63.6
Aqoxy6G00731 Aquilegia oxysepala HOM05D002457 ORTHO05D005750 1.6e-45 186.4 150 59.3
Oeu054770.1 Olea europaea HOM05D002457 ORTHO05D005750 2.1e-45 186.0 149 59.1
Ah.05g169750 Amaranthus hybridus HOM05D002457 ORTHO05D005750 2.7e-45 185.7 141 63.1
Solyc04g074490.3 Solanum lycopersicum HOM05D002457 ORTHO05D005750 7.9e-45 184.1 152 61.2
HanXRQChr09g0250381 Helianthus annuus HOM05D002457 ORTHO05D005750 1.0e-44 183.7 155 60.0
EL10Ac1g01165 Beta vulgaris HOM05D002457 ORTHO05D005750 1.4e-44 183.3 152 59.2
Cc10_g06810 Coffea canephora HOM05D002457 ORTHO05D005750 1.8e-44 183.0 141 61.0
ATR0782G122 Amborella trichopoda HOM05D002457 ORTHO05D005750 5.2e-44 181.4 142 62.7
Atru.chr13.1134 Acer truncatum HOM05D002457 ORTHO05D005750 1.1e-43 180.3 152 61.8
Rhsim06G0078900 Rhododendron simsii HOM05D002457 ORTHO05D005750 1.5e-43 179.9 170 54.7
CAN.G970.12 Capsicum annuum HOM05D002457 ORTHO05D005750 2.6e-43 179.1 146 60.3
Lsat_1_v5_gn_9_72780 Lactuca sativa HOM05D002457 ORTHO05D005750 3.3e-43 178.7 156 60.3
Ciclev10000161m.g Citrus clementina HOM05D002457 ORTHO05D005750 9.7e-43 177.2 136 64.7
CANSAT54G2291 Cannabis sativa HOM05D002457 ORTHO05D005750 1.3e-42 176.8 150 60.0
CDE03G0287 Ceratophyllum demersum HOM05D002457 ORTHO05D005750 1.4e-41 173.3 146 59.6
SGA_v2.0_scaffold84G26485 Striga asiatica HOM05D002457 ORTHO05D005750 3.1e-41 172.2 141 59.6
Haze_22295 Corylus avellana HOM05D002457 ORTHO05D005750 4.1e-41 171.8 150 58.0
AUR62018953 Chenopodium quinoa HOM05D002457 ORTHO05D005750 7.7e-40 167.5 146 58.2
AUR62027799 Chenopodium quinoa HOM05D002457 ORTHO05D005750 7.7e-40 167.5 148 56.8
Peaxi162Scf00030g01716 Petunia axillaris HOM05D002457 ORTHO05D005750 7.7e-40 167.5 191 49.7
DCAR_019216 Daucus carota HOM05D002457 ORTHO05D005750 7.2e-38 161.0 152 55.9
SalBow8G1618 Salvia bowleyana HOM05D002457 ORTHO05D005750 7.2e-38 161.0 201 45.3
HPP92_011163 Vanilla planifolia HOM05D002457 ORTHO05D005750 1.2e-37 160.2 142 57.0
C02p35500 Brassica napus HOM05D002457 ORTHO05D005750 6.1e-37 157.9 148 53.4
Zm00001eb018970 Zea mays HOM05D002457 ORTHO05D005750 6.7e-36 154.5 141 56.7
Os03g0389900 Oryza sativa ssp. japonica HOM05D002457 ORTHO05D005750 1.5e-35 153.3 140 55.7
Mapoly0027s0020 Marchantia polymorpha HOM05D002457 ORTHO05D005750 3.3e-35 152.1 143 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4998 Anthoceros agrestis HOM05D002457 ORTHO05D005750 9.7e-35 150.6 143 51.0
Pp3c11_17580 Physcomitrium patens HOM05D002457 ORTHO05D005750 1.7e-34 149.8 143 51.0
MBI02_g33236_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D005750 3.8e-31 138.7 103 60.2
SMO351G0300 Selaginella moellendorffii HOM05D002457 ORTHO05D005750 1.5e-30 136.7 141 49.6
Nitab4.5_0000786g0170 Nicotiana tabacum HOM05D002457 ORTHO05D005750 4.5e-24 115.2 75 73.3
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 4.2e-22 108.6 108 56.5
Thecc.09G097900 Theobroma cacao HOM05D002457 ORTHO05D005750 3.6e-21 105.5 83 62.7
unitig_8.g3608 Utricularia gibba HOM05D002457 ORTHO05D005750 1.4e-20 103.6 73 64.4
RcHm_v2.0_Chr7g0243011 Rosa chinensis HOM05D002457 ORTHO05D005750 2.0e-19 99.8 150 42.0
Pp3c7_15150 Physcomitrium patens HOM05D002457 ORTHO05D005750 9.8e-19 97.4 142 38.7
Cre07.g327150 Chlamydomonas reinhardtii HOM05D002457 ORTHO05D005750 1.2e-16 90.5 119 40.3
Pp3c23_15970 Physcomitrium patens HOM05D002457 ORTHO05D008732 1.0e-12 77.4 137 33.6
RcHm_v2.0_Chr7g0243161 Rosa chinensis HOM05D002457 ORTHO05D005750 2.0e-11 73.2 63 55.6
Mapoly0061s0019 Marchantia polymorpha HOM05D002457 ORTHO05D008732 4.9e-10 68.6 144 27.8
RcHm_v2.0_Chr2g0139391 Rosa chinensis HOM05D002457 ORTHO05D005750 6.4e-10 68.2 48 66.7
CDE07G0411 Ceratophyllum demersum HOM05D002457 ORTHO05D008732 1.1e-09 67.4 143 31.5
Zm00001eb200180 Zea mays HOM05D002457 ORTHO05D008732 2.4e-09 66.2 137 29.2
TAR622G0887 Trochodendron aralioides HOM05D002457 ORTHO05D008732 4.1e-09 65.5 140 29.3
TAR369G1073 Trochodendron aralioides HOM05D002457 ORTHO05D008732 5.4e-09 65.1 140 29.3
Os11g0572800 Oryza sativa ssp. japonica HOM05D002457 ORTHO05D008732 1.6e-08 63.5 140 26.4
Lj1C1061G4 Lonicera japonica HOM05D002457 ORTHO05D008732 4.6e-08 62.0 145 28.3
Medtr7g106990 Medicago truncatula HOM05D002457 ORTHO05D008732 1.0e-07 60.8 77 39.0
Glyma.19G202600 Glycine max HOM05D002457 ORTHO05D008732 1.7e-07 60.1 69 43.5
ATR0697G006 Amborella trichopoda HOM05D002457 ORTHO05D008732 3.0e-07 59.3 137 30.7
Actinidia30789 Actinidia chinensis HOM05D002457 ORTHO05D005750 3.9e-07 58.9 48 60.4
arahy.Tifrunner.gnm1.ann1.3292NE Arachis hypogaea HOM05D002457 ORTHO05D008732 3.9e-07 58.9 69 40.6
CBR_g29587 Chara braunii HOM05D002457 ORTHO05D008732 3.9e-07 58.9 154 25.3
Lj1g0003374 Lotus japonicus HOM05D002457 ORTHO05D008732 3.9e-07 58.9 69 42.0
MBI05_g40563_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D008732 3.9e-07 58.9 140 27.1
CANSAT64G0706 Cannabis sativa HOM05D002457 ORTHO05D008732 6.6e-07 58.2 135 28.1
Ca_09083_v3 Cicer arietinum L. HOM05D002457 ORTHO05D008732 6.6e-07 58.2 69 42.0
CSS0024523 Camellia sinensis var. sinensis HOM05D002457 ORTHO05D008732 8.6e-07 57.8 142 26.8
CSS0042077 Camellia sinensis var. sinensis HOM05D002457 ORTHO05D008732 8.6e-07 57.8 142 26.8
TWI74G1304 Tripterygium wilfordii HOM05D002457 ORTHO05D008732 8.6e-07 57.8 135 27.4
MELO3C009577.2 Cucumis melo HOM05D002457 ORTHO05D008732 1.5e-06 57.0 71 38.0
Phvul.001G198700 Phaseolus vulgaris HOM05D002457 ORTHO05D008732 1.5e-06 57.0 69 40.6
Psat3g026960 Pisum sativum HOM05D002457 ORTHO05D008732 1.5e-06 57.0 69 42.0
TPR.G34450 Trifolium pratense HOM05D002457 ORTHO05D008732 1.5e-06 57.0 140 27.1
VMungo0331G0446 Vigna mungo HOM05D002457 ORTHO05D008732 1.5e-06 57.0 140 27.9
Cfa022487 Carpinus fangiana HOM05D002457 ORTHO05D008732 1.9e-06 56.6 137 27.7
CsaV3_3G038350 Cucumis sativus L. HOM05D002457 ORTHO05D008732 2.5e-06 56.2 71 36.6
arahy.Tifrunner.gnm1.ann1.V1YZ1K Arachis hypogaea HOM05D002457 ORTHO05D008732 3.3e-06 55.8 69 37.7
Haze_20131 Corylus avellana HOM05D002457 ORTHO05D008732 4.3e-06 55.5 69 39.1
QL07p026269 Quercus lobata HOM05D002457 ORTHO05D008732 4.3e-06 55.5 135 27.4
Sabra16G0066900 Salix brachista HOM05D002457 ORTHO05D008732 4.3e-06 55.5 69 40.6
CiPaw.11G082000 Carya illinoinensis HOM05D002457 ORTHO05D008732 5.6e-06 55.1 135 27.4
Potri.016G065400 Populus trichocarpa HOM05D002457 ORTHO05D008732 5.6e-06 55.1 69 39.1
Rhsim05G0230700 Rhododendron simsii HOM05D002457 ORTHO05D008732 5.6e-06 55.1 74 36.5
Sed0004577 Sechium edule HOM05D002457 ORTHO05D008732 5.6e-06 55.1 137 25.5
BcaC03g15804 Brassica carinata HOM05D002457 ORTHO05D005750 7.3e-06 54.7 44 54.5


User provided reference genes

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