Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.4e-63 246.5 129 100.0
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 2.2e-37 159.5 122 69.7
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 2.9e-37 159.1 122 69.7
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 8.5e-37 157.5 122 68.9
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 1.4e-36 156.8 122 68.9
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.9e-36 156.4 122 68.9
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.9e-36 156.4 122 68.0
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 1.9e-36 156.4 122 68.0
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.9e-36 156.4 122 68.0
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.9e-36 156.4 122 68.0
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 2.5e-36 156.0 127 66.1
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.0
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.5e-36 156.0 122 68.9
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 3.2e-36 155.6 122 67.2
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 4.2e-36 155.2 122 68.0
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.2e-36 155.2 122 68.0
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 67.2
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 67.2
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 68.0
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 68.0
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 67.2
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 67.2
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 67.2
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 67.2
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 5.5e-36 154.8 122 67.2
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 67.2
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 67.2
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 68.0
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 67.2
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 67.2
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 67.2
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 67.2
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 7.2e-36 154.5 122 67.2
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 9.4e-36 154.1 122 67.2
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 1.2e-35 153.7 122 67.2
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.2e-35 153.7 122 67.2
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 1.2e-35 153.7 122 66.4
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.2e-35 153.7 122 66.4
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 1.6e-35 153.3 121 66.9
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 1.6e-35 153.3 122 67.2
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.6e-35 153.3 122 65.6
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.6e-35 153.3 122 66.4
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 67.2
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.1e-35 152.9 122 66.4
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 67.2
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 67.2
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 67.2
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 67.2
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 67.2
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 66.4
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 67.2
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.7e-35 152.5 122 65.6
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 66.4
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 66.4
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 67.2
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 66.4
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 67.2
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 66.4
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 67.2
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 3.6e-35 152.1 122 66.4
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.7e-35 151.8 122 67.2
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 4.7e-35 151.8 122 66.4
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 4.7e-35 151.8 122 66.4
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 4.7e-35 151.8 122 66.4
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 4.7e-35 151.8 122 65.6
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 4.7e-35 151.8 122 65.6
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 6.1e-35 151.4 122 65.6
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 6.1e-35 151.4 122 66.4
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 6.1e-35 151.4 122 65.6
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 6.1e-35 151.4 122 65.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 6.1e-35 151.4 122 65.6
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 7.9e-35 151.0 122 65.6
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 7.9e-35 151.0 122 66.4
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.0e-34 150.6 121 66.9
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 1.0e-34 150.6 122 65.6
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 1.4e-34 150.2 122 65.6
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.4e-34 150.2 122 64.8
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.8e-34 149.8 122 65.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.8e-34 149.8 122 65.6
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 2.3e-34 149.4 122 64.8
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 2.3e-34 149.4 122 65.6
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 3.9e-34 148.7 122 65.6
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 3.9e-34 148.7 122 63.9
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 5.1e-34 148.3 122 65.6
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 5.1e-34 148.3 122 66.4
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 5.1e-34 148.3 122 66.4
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 6.7e-34 147.9 121 66.1
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 6.7e-34 147.9 122 64.8
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 6.7e-34 147.9 122 64.8
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 8.8e-34 147.5 122 65.6
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 8.8e-34 147.5 122 64.8
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.5e-33 146.7 122 63.9
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.5e-33 146.7 122 63.9
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 2.6e-33 146.0 122 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 9.7e-33 144.1 122 63.1
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 9.7e-33 144.1 122 62.3
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 2.2e-32 142.9 122 62.3
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 2.8e-32 142.5 122 63.9
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 2.8e-32 142.5 122 63.9
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.7e-32 142.1 122 62.3
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 4.8e-32 141.7 122 64.8
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 6.3e-32 141.4 122 62.3
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 3.1e-31 139.0 122 63.1
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 8.5e-29 131.0 156 50.6
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.5e-28 130.2 122 59.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 9.7e-25 117.5 122 54.1
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 9.1e-23 110.9 128 51.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.6e-22 110.2 102 59.8
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 2.0e-22 109.8 120 50.0
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 1.3e-21 107.1 117 49.6
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 5.0e-21 105.1 109 53.2
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 1.5e-20 103.6 121 49.6
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 7.2e-20 101.3 113 53.1
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.6e-19 100.1 109 50.5
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.6e-19 100.1 111 55.9
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.7e-19 99.4 109 52.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.7e-19 98.6 109 51.4
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.0e-18 95.9 99 53.5
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.0e-18 95.9 109 49.5
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 8.8e-18 94.4 109 49.5
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 8.8e-18 94.4 109 49.5
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 8.8e-18 94.4 109 49.5
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 8.8e-18 94.4 109 49.5
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 8.8e-18 94.4 109 49.5
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.0e-17 93.2 109 50.5
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 2.8e-16 89.4 42 100.0
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-15 87.4 109 45.0
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.8e-15 86.7 40 100.0
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-15 86.3 42 95.2
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 7.0e-15 84.7 42 95.2
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.5e-14 82.4 42 85.7
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 5.9e-14 81.6 42 90.5
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.3e-13 80.5 122 44.3
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 6.5e-13 78.2 42 85.7
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 3.6e-11 72.4 34 94.1
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.0e-10 69.3 42 78.6
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 9.8e-09 64.3 40 80.0
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 7.7e-06 54.7 121 30.6


User provided reference genes

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