Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20453 Trifolium pratense HOM05D000027 ORTHO05D000671 1.2e-43 179.5 92 100.0
Medtr7g013220 Medicago truncatula HOM05D000027 ORTHO05D000671 3.4e-14 81.6 38 94.7
Psat3g201240 Pisum sativum HOM05D000027 ORTHO05D000671 7.5e-14 80.5 38 94.7
Medtr7g013200 Medicago truncatula HOM05D000027 ORTHO05D000671 6.3e-13 77.4 38 86.8
Glyma.18G265900 Glycine max HOM05D000027 ORTHO05D000671 3.1e-12 75.1 38 86.8
Phvul.008G035800 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 4.1e-12 74.7 38 84.2
VMungo1383G0331 Vigna mungo HOM05D000027 ORTHO05D000671 4.1e-12 74.7 38 81.6
Glyma.08G244600 Glycine max HOM05D000027 ORTHO05D000671 3.5e-11 71.6 38 78.9
Glyma.18G266100 Glycine max HOM05D000027 ORTHO05D000671 4.5e-11 71.2 38 76.3
Lj1g0013724 Lotus japonicus HOM05D000027 ORTHO05D000671 5.9e-11 70.9 38 78.9
Lj1g0001308 Lotus japonicus HOM05D000027 ORTHO05D000671 1.3e-10 69.7 60 60.0
VMungo1383G1132 Vigna mungo HOM05D000027 ORTHO05D000671 1.7e-10 69.3 38 73.7
Glyma.08G244800 Glycine max HOM05D000027 ORTHO05D000671 2.3e-10 68.9 38 76.3
VMungo1383G2659 Vigna mungo HOM05D000027 ORTHO05D000671 2.3e-10 68.9 38 78.9
arahy.Tifrunner.gnm1.ann1.82K8GB Arachis hypogaea HOM05D000027 ORTHO05D000671 2.9e-10 68.6 38 73.7
Medtr7g013180 Medicago truncatula HOM05D000027 ORTHO05D000671 2.9e-10 68.6 37 78.4
arahy.Tifrunner.gnm1.ann1.K9YU9F Arachis hypogaea HOM05D000027 ORTHO05D000671 3.8e-10 68.2 38 71.1
Medtr7g013260 Medicago truncatula HOM05D000027 ORTHO05D000671 3.8e-10 68.2 36 75.0
arahy.Tifrunner.gnm1.ann1.P9CWB3 Arachis hypogaea HOM05D000027 ORTHO05D000671 1.1e-09 66.6 38 68.4
Medtr7g013240 Medicago truncatula HOM05D000027 ORTHO05D000671 1.1e-09 66.6 36 72.2
Glyma.08G244500 Glycine max HOM05D000027 ORTHO05D000671 1.5e-09 66.2 38 73.7
VMungo1383G0550 Vigna mungo HOM05D000027 ORTHO05D000671 1.5e-09 66.2 38 73.7
arahy.Tifrunner.gnm1.ann1.12746V Arachis hypogaea HOM05D000027 ORTHO05D000671 2.5e-09 65.5 39 71.8
arahy.Tifrunner.gnm1.ann1.9U88P8 Arachis hypogaea HOM05D000027 ORTHO05D000671 2.5e-09 65.5 38 71.1
arahy.Tifrunner.gnm1.ann1.JU9RXL Arachis hypogaea HOM05D000027 ORTHO05D000671 2.5e-09 65.5 39 74.4
arahy.Tifrunner.gnm1.ann1.NCUM9D Arachis hypogaea HOM05D000027 ORTHO05D000671 2.5e-09 65.5 39 74.4
arahy.Tifrunner.gnm1.ann1.Y4PC7W Arachis hypogaea HOM05D000027 ORTHO05D000671 2.5e-09 65.5 38 71.1
Glyma.18G266000 Glycine max HOM05D000027 ORTHO05D000671 2.5e-09 65.5 38 73.7
Phvul.008G034000 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 2.5e-09 65.5 38 73.7
Phvul.008G034100 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 2.5e-09 65.5 35 77.1
TPR.G33484 Trifolium pratense HOM05D000027 ORTHO05D000671 2.5e-09 65.5 37 75.7
VMungo1383G2712 Vigna mungo HOM05D000027 ORTHO05D000671 2.5e-09 65.5 35 77.1
Psat3g201280 Pisum sativum HOM05D000027 ORTHO05D000671 3.3e-09 65.1 37 70.3
Ca_04341_v3 Cicer arietinum L. HOM05D000027 ORTHO05D000671 4.3e-09 64.7 36 69.4
Lj1g0014779 Lotus japonicus HOM05D000027 ORTHO05D000671 4.3e-09 64.7 37 73.0
arahy.Tifrunner.gnm1.ann1.S6WIDG Arachis hypogaea HOM05D000027 ORTHO05D000671 5.6e-09 64.3 37 67.6
arahy.Tifrunner.gnm1.ann1.R5P48D Arachis hypogaea HOM05D000027 ORTHO05D000671 7.3e-09 63.9 36 69.4
arahy.Tifrunner.gnm1.ann1.TW2SCU Arachis hypogaea HOM05D000027 ORTHO05D000671 7.3e-09 63.9 36 69.4
Glyma.18G265800 Glycine max HOM05D000027 ORTHO05D000671 1.6e-08 62.8 37 70.3
arahy.Tifrunner.gnm1.ann1.3UG2F5 Arachis hypogaea HOM05D000027 ORTHO05D000671 2.1e-08 62.4 38 65.8
arahy.Tifrunner.gnm1.ann1.E5EEMB Arachis hypogaea HOM05D000027 ORTHO05D000671 2.1e-08 62.4 37 64.9
arahy.Tifrunner.gnm1.ann1.HT9G48 Arachis hypogaea HOM05D000027 ORTHO05D000671 2.1e-08 62.4 38 68.4
arahy.Tifrunner.gnm1.ann1.L0ZIY2 Arachis hypogaea HOM05D000027 ORTHO05D000671 2.1e-08 62.4 38 65.8
Duzib147G1387 Durio zibethinus HOM05D000027 ORTHO05D000671 2.1e-08 62.4 38 73.7
Lj1g0001290 Lotus japonicus HOM05D000027 ORTHO05D000671 2.8e-08 62.0 37 70.3
VMungo1383G3122 Vigna mungo HOM05D000027 ORTHO05D000671 2.8e-08 62.0 37 73.0
arahy.Tifrunner.gnm1.ann1.204G50 Arachis hypogaea HOM05D000027 ORTHO05D000671 3.6e-08 61.6 38 65.8
Glyma.08G243700 Glycine max HOM05D000027 ORTHO05D000671 3.6e-08 61.6 38 65.8
Glyma.19G029500 Glycine max HOM05D000027 ORTHO05D000671 3.6e-08 61.6 38 65.8
arahy.Tifrunner.gnm1.ann1.MG09JY Arachis hypogaea HOM05D000027 ORTHO05D000671 4.7e-08 61.2 38 65.8
Glyma.18G265700 Glycine max HOM05D000027 ORTHO05D000671 4.7e-08 61.2 38 68.4
Atru.chr1.1915 Acer truncatum HOM05D000027 ORTHO05D000671 6.1e-08 60.8 42 69.0
Phvul.008G034300 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 6.1e-08 60.8 38 65.8
TPR.G33486 Trifolium pratense HOM05D000027 ORTHO05D000671 6.1e-08 60.8 36 69.4
TPR.G36583 Trifolium pratense HOM05D000027 ORTHO05D000671 6.1e-08 60.8 36 69.4
arahy.Tifrunner.gnm1.ann1.31EZX1 Arachis hypogaea HOM05D000027 ORTHO05D000671 8.0e-08 60.5 34 70.6
arahy.Tifrunner.gnm1.ann1.VBG6VY Arachis hypogaea HOM05D000027 ORTHO05D000671 8.0e-08 60.5 34 70.6
Phvul.004G035500 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 1.0e-07 60.1 38 63.2
VMungo0464G1748 Vigna mungo HOM05D000027 ORTHO05D000671 1.0e-07 60.1 38 63.2
Lalb_Chr17g0337011 Lupinus albus HOM05D000027 ORTHO05D000671 1.8e-07 59.3 34 70.6
Thecc.04G093800 Theobroma cacao HOM05D000027 ORTHO05D000671 1.8e-07 59.3 35 74.3
Gohir.A05G372000 Gossypium hirsutum HOM05D000027 ORTHO05D000671 2.3e-07 58.9 38 71.1
Gorai.012G048900 Gossypium raimondii HOM05D000027 ORTHO05D000671 2.3e-07 58.9 38 71.1
PGSC0003DMG400025152 Solanum tuberosum HOM05D000027 ORTHO05D000671 3.0e-07 58.5 38 68.4
Thecc.04G094100 Theobroma cacao HOM05D000027 ORTHO05D000671 3.0e-07 58.5 38 68.4
Duzib147G0124 Durio zibethinus HOM05D000027 ORTHO05D000671 4.0e-07 58.2 38 65.8
Gohir.D04G043800 Gossypium hirsutum HOM05D000027 ORTHO05D000671 4.0e-07 58.2 38 68.4
Lalb_Chr04g0258451 Lupinus albus HOM05D000027 ORTHO05D000671 4.0e-07 58.2 37 67.6
Glyma.13G056600 Glycine max HOM05D000027 ORTHO05D000671 5.2e-07 57.8 38 65.8
Potri.004G119700 Populus trichocarpa HOM05D000027 ORTHO05D000671 5.2e-07 57.8 38 65.8
Glyma.01G085600 Glycine max HOM05D000027 ORTHO05D000671 6.8e-07 57.4 38 65.8
Glyma.08G244700 Glycine max HOM05D000027 ORTHO05D000671 6.8e-07 57.4 38 65.8
Manes.02G054100 Manihot esculenta HOM05D000027 ORTHO05D000671 6.8e-07 57.4 38 65.8
arahy.Tifrunner.gnm1.ann1.IY6VBP Arachis hypogaea HOM05D000027 ORTHO05D000671 8.9e-07 57.0 38 63.2
Thecc.04G093600 Theobroma cacao HOM05D000027 ORTHO05D000671 8.9e-07 57.0 38 68.4
Thecc.04G093700 Theobroma cacao HOM05D000027 ORTHO05D000671 8.9e-07 57.0 38 71.1
TAR374G0804 Trochodendron aralioides HOM05D000027 ORTHO05D000671 8.9e-07 57.0 38 68.4
arahy.Tifrunner.gnm1.ann1.RUJZ6Q Arachis hypogaea HOM05D000027 ORTHO05D000671 1.2e-06 56.6 37 64.9
Medtr6g038300 Medicago truncatula HOM05D000150 ORTHO05D000108 1.2e-06 56.6 58 46.6
Aqoxy3G03608 Aquilegia oxysepala HOM05D000027 ORTHO05D000671 1.5e-06 56.2 38 68.4
CSS0005171 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000671 1.5e-06 56.2 35 65.7
Cc00_g21850 Coffea canephora HOM05D000027 ORTHO05D000671 1.5e-06 56.2 38 65.8
Haze_14438 Corylus avellana HOM05D000027 ORTHO05D000671 1.5e-06 56.2 38 63.2
MBI16_g19637_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 1.5e-06 56.2 38 68.4
MBI16_g36519_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 1.5e-06 56.2 38 68.4
ATR0064G069 Amborella trichopoda HOM05D000027 ORTHO05D000671 2.0e-06 55.8 38 63.2
arahy.Tifrunner.gnm1.ann1.0KX0W6 Arachis hypogaea HOM05D000027 ORTHO05D000671 2.0e-06 55.8 35 65.7
arahy.Tifrunner.gnm1.ann1.5MLS64 Arachis hypogaea HOM05D000027 ORTHO05D000671 2.0e-06 55.8 35 65.7
arahy.Tifrunner.gnm1.ann1.UP4NHJ Arachis hypogaea HOM05D000027 ORTHO05D000671 2.0e-06 55.8 38 65.8
Glyma.13G056800 Glycine max HOM05D000027 ORTHO05D000671 2.0e-06 55.8 38 63.2
Lj2g0016960 Lotus japonicus HOM05D000027 ORTHO05D000671 2.0e-06 55.8 38 63.2
Lalb_Chr10g0093031 Lupinus albus HOM05D000027 ORTHO05D000671 2.0e-06 55.8 34 73.5
arahy.Tifrunner.gnm1.ann1.1P299X Arachis hypogaea HOM05D000027 ORTHO05D000671 2.6e-06 55.5 37 64.9
Cfa007657 Carpinus fangiana HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 63.2
FvH4_6g46970 Fragaria vesca HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 60.5
FAN14G5534 Fragaria x ananassa HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 60.5
Manes.02G054300 Manihot esculenta HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 63.2
Nitab4.5_0000565g0270 Nicotiana tabacum HOM05D000027 ORTHO05D000671 2.6e-06 55.5 36 69.4
Nitab4.5_0006731g0030 Nicotiana tabacum HOM05D000027 ORTHO05D000671 2.6e-06 55.5 36 69.4
Peaxi162Scf00166g00527 Petunia axillaris HOM05D000027 ORTHO05D000671 2.6e-06 55.5 36 69.4
Peaxi162Scf00991g00039 Petunia axillaris HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 63.2
Potri.017G091500 Populus trichocarpa HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 65.8
RcHm_v2.0_Chr2g0166001 Rosa chinensis HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 65.8
TAR374G0268 Trochodendron aralioides HOM05D000027 ORTHO05D000671 2.6e-06 55.5 38 65.8
GSVIVG01007892001 Vitis vinifera HOM05D000027 ORTHO05D000671 2.6e-06 55.5 35 62.9
CSS0040900 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000671 3.4e-06 55.1 38 60.5
Gohir.D11G076500 Gossypium hirsutum HOM05D000027 ORTHO05D000671 3.4e-06 55.1 38 65.8
Gohir.D11G076700 Gossypium hirsutum HOM05D000027 ORTHO05D000671 3.4e-06 55.1 38 65.8
Hma1.2p1_0114F.1_g055560 Hydrangea macrophylla HOM05D000027 ORTHO05D000671 3.4e-06 55.1 35 62.9
QL02p068043 Quercus lobata HOM05D000027 ORTHO05D000671 3.4e-06 55.1 75 41.3
TAR374G0117 Trochodendron aralioides HOM05D000027 ORTHO05D000671 3.4e-06 55.1 38 63.2
Zm00001eb057750 Zea mays HOM05D000027 ORTHO05D000671 3.4e-06 55.1 38 60.5
Actinidia17582 Actinidia chinensis HOM05D000027 ORTHO05D000671 4.4e-06 54.7 35 60.0
arahy.Tifrunner.gnm1.ann1.DV26TN Arachis hypogaea HOM05D000027 ORTHO05D000671 4.4e-06 54.7 77 42.9
Cc11_g05570 Coffea canephora HOM05D000027 ORTHO05D000671 4.4e-06 54.7 105 35.2
Gorai.007G082200 Gossypium raimondii HOM05D000027 ORTHO05D000671 4.4e-06 54.7 38 65.8
Lsat_1_v5_gn_4_171540 Lactuca sativa HOM05D000027 ORTHO05D000671 4.4e-06 54.7 105 35.2
MBI16_g41640_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 4.4e-06 54.7 35 65.7
MBI16_g42106_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 4.4e-06 54.7 35 65.7
Nitab4.5_0006731g0010 Nicotiana tabacum HOM05D000027 ORTHO05D000671 4.4e-06 54.7 56 53.6
Psat1g067760 Pisum sativum HOM05D000027 ORTHO05D000671 4.4e-06 54.7 38 63.2
Duzib264G0283 Durio zibethinus HOM05D000027 ORTHO05D000671 5.7e-06 54.3 38 63.2
Glyma.19G029300 Glycine max HOM05D000027 ORTHO05D000671 5.7e-06 54.3 38 65.8
Gohir.A11G130600 Gossypium hirsutum HOM05D000027 ORTHO05D000671 5.7e-06 54.3 38 63.2
Oeu031619.3 Olea europaea HOM05D000027 ORTHO05D000671 5.7e-06 54.3 35 62.9
PGR004G2252 Punica granatum HOM05D000027 ORTHO05D000671 5.7e-06 54.3 36 58.3
RcHm_v2.0_Chr2g0165951 Rosa chinensis HOM05D000027 ORTHO05D000671 5.7e-06 54.3 39 59.0
Solyc02g066960.3 Solanum lycopersicum HOM05D000027 ORTHO05D000671 5.7e-06 54.3 34 67.6
Sopen02g016150 Solanum pennellii HOM05D000027 ORTHO05D000671 5.7e-06 54.3 34 67.6
GSVIVG01007896001 Vitis vinifera HOM05D000027 ORTHO05D000671 5.7e-06 54.3 35 62.9
arahy.Tifrunner.gnm1.ann1.AR931D Arachis hypogaea HOM05D000027 ORTHO05D000671 7.5e-06 53.9 35 65.7
arahy.Tifrunner.gnm1.ann1.JA6J2D Arachis hypogaea HOM05D000027 ORTHO05D000671 7.5e-06 53.9 35 65.7
arahy.Tifrunner.gnm1.ann1.S6ID14 Arachis hypogaea HOM05D000027 ORTHO05D000671 7.5e-06 53.9 35 65.7
CiPaw.03G089100 Carya illinoinensis HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 63.2
HanXRQChr04g0119291 Helianthus annuus HOM05D000027 ORTHO05D000671 7.5e-06 53.9 35 60.0
Lju41C3G4 Lonicera japonica HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 60.5
Lj2g0006909 Lotus japonicus HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 60.5
Lalb_Chr02g0158961 Lupinus albus HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 63.2
MBI14_g24977_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 7.5e-06 53.9 35 65.7
MBI16_g44983_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 63.2
MBI16_g45328_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 63.2
Oeu042672.1 Olea europaea HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 63.2
QL09p026869 Quercus lobata HOM05D000027 ORTHO05D000671 7.5e-06 53.9 35 65.7
QL09p026894 Quercus lobata HOM05D000027 ORTHO05D000671 7.5e-06 53.9 35 65.7
SGA_v2.0_scaffold52G19167 Striga asiatica HOM05D000027 ORTHO05D000671 7.5e-06 53.9 38 55.3
AL3G11330 Arabidopsis lyrata HOM05D000027 ORTHO05D000671 9.8e-06 53.5 38 63.2
arahy.Tifrunner.gnm1.ann1.0M4QFL Arachis hypogaea HOM05D000027 ORTHO05D000671 9.8e-06 53.5 38 63.2
arahy.Tifrunner.gnm1.ann1.I91L2A Arachis hypogaea HOM05D000027 ORTHO05D000671 9.8e-06 53.5 38 63.2
arahy.Tifrunner.gnm1.ann1.IHD6K8 Arachis hypogaea HOM05D000027 ORTHO05D000671 9.8e-06 53.5 35 62.9
Glyma.01G085800 Glycine max HOM05D000027 ORTHO05D000671 9.8e-06 53.5 38 57.9
Gohir.A09G010000 Gossypium hirsutum HOM05D000027 ORTHO05D000671 9.8e-06 53.5 34 73.5
Gohir.D09G009100 Gossypium hirsutum HOM05D000027 ORTHO05D000671 9.8e-06 53.5 34 73.5
Gorai.006G010800 Gossypium raimondii HOM05D000027 ORTHO05D000671 9.8e-06 53.5 34 73.5
Hma1.2p1_0481F.1_g162080 Hydrangea macrophylla HOM05D000027 ORTHO05D000671 9.8e-06 53.5 38 65.8
Manes.06G086400 Manihot esculenta HOM05D000027 ORTHO05D000671 9.8e-06 53.5 35 60.0
Phvul.004G035300 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 9.8e-06 53.5 38 65.8
QL10p019055 Quercus lobata HOM05D000027 ORTHO05D000671 9.8e-06 53.5 37 59.5
THA.LOC104821000 Tarenaya hassleriana HOM05D000027 ORTHO05D000671 9.8e-06 53.5 35 68.6
TPR.G16208 Trifolium pratense HOM05D000150 ORTHO05D000108 9.8e-06 53.5 59 44.1
VMungo0464G1652 Vigna mungo HOM05D000027 ORTHO05D000671 9.8e-06 53.5 38 63.2


User provided reference genes

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