Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20449 Trifolium pratense HOM05D000252 ORTHO05D006173 9.3e-37 156.4 80 100.0
Lalb_Chr23g0271541 Lupinus albus HOM05D000252 ORTHO05D006173 1.4e-24 115.9 69 85.5
Medtr3g009190 Medicago truncatula HOM05D000252 ORTHO05D006173 4.1e-24 114.4 69 84.1
Medtr6g453040 Medicago truncatula HOM05D000252 ORTHO05D006173 4.1e-24 114.4 69 84.1
Psat5g078840 Pisum sativum HOM05D000252 ORTHO05D006173 4.1e-24 114.4 69 81.2
VMungo1309G0630 Vigna mungo HOM05D000252 ORTHO05D006173 1.2e-23 112.8 69 84.1
Phvul.009G054600 Phaseolus vulgaris HOM05D000252 ORTHO05D006173 4.5e-23 110.9 69 82.6
Medtr3g091070 Medicago truncatula HOM05D000252 ORTHO05D006173 1.3e-22 109.4 69 81.2
Lj1g0001797 Lotus japonicus HOM05D000252 ORTHO05D006173 1.7e-22 109.0 69 79.7
Psat5g078720 Pisum sativum HOM05D000252 ORTHO05D006173 1.7e-22 109.0 69 78.3
arahy.Tifrunner.gnm1.ann1.32U02B Arachis hypogaea HOM05D000252 ORTHO05D006173 1.1e-21 106.3 68 80.9
arahy.Tifrunner.gnm1.ann1.6GL1RL Arachis hypogaea HOM05D000252 ORTHO05D006173 1.1e-21 106.3 68 80.9
Glyma.04G237500 Glycine max HOM05D000252 ORTHO05D006173 1.1e-21 106.3 69 79.7
Glyma.06G126500 Glycine max HOM05D000252 ORTHO05D006173 4.2e-21 104.4 69 78.3
arahy.Tifrunner.gnm1.ann1.VK1FTJ Arachis hypogaea HOM05D000252 ORTHO05D006173 5.5e-21 104.0 71 78.9
CSS0014928 Camellia sinensis var. sinensis HOM05D000252 ORTHO05D006173 4.4e-18 94.4 69 66.7
Gohir.A02G057200 Gossypium hirsutum HOM05D000252 ORTHO05D006173 9.7e-18 93.2 69 65.2
vmacro00029 Vaccinium macrocarpon HOM05D000252 ORTHO05D006173 1.7e-17 92.4 69 63.8
COL.COLO4_34295 Corchorus olitorius HOM05D000252 ORTHO05D006173 4.8e-17 90.9 69 63.8
Gohir.D02G062900 Gossypium hirsutum HOM05D000252 ORTHO05D006173 4.8e-17 90.9 69 63.8
Gorai.005G070800 Gossypium raimondii HOM05D000252 ORTHO05D006173 4.8e-17 90.9 69 63.8
TWI81G1050 Tripterygium wilfordii HOM05D000252 ORTHO05D006173 8.2e-17 90.1 69 65.2
Cfa010656 Carpinus fangiana HOM05D000252 ORTHO05D006173 1.1e-16 89.7 70 64.3
TAR622G0972 Trochodendron aralioides HOM05D000252 ORTHO05D006173 1.4e-16 89.4 69 63.8
Actinidia25893 Actinidia chinensis HOM05D000252 ORTHO05D006173 1.8e-16 89.0 67 65.7
Ca_16687_v3 Cicer arietinum L. HOM05D000252 ORTHO05D006173 3.1e-16 88.2 69 72.5
FAN05G2628 Fragaria x ananassa HOM05D001214 ORTHO05D006173 3.1e-16 88.2 69 59.4
Nn2g15901 Nelumbo nucifera HOM05D000252 ORTHO05D006173 3.1e-16 88.2 69 63.8
FAN09G0108 Fragaria x ananassa HOM05D000252 ORTHO05D006173 4.1e-16 87.8 69 59.4
Sabra16G0306700 Salix brachista HOM05D000252 ORTHO05D006173 4.1e-16 87.8 69 59.4
SalBow1G7354 Salvia bowleyana HOM05D000252 ORTHO05D006173 4.1e-16 87.8 69 62.3
TAR629G1221 Trochodendron aralioides HOM05D000252 ORTHO05D006173 4.1e-16 87.8 67 64.2
SGA_v2.0_scaffold51G18622 Striga asiatica HOM05D000252 ORTHO05D006173 5.3e-16 87.4 69 59.4
Cpa.g.sc87.4 Carica papaya HOM05D000252 ORTHO05D006173 7.0e-16 87.0 69 63.8
CiPaw.11G106500 Carya illinoinensis HOM05D000252 ORTHO05D006173 7.0e-16 87.0 69 63.8
FvH4_6g28040 Fragaria vesca HOM05D000252 ORTHO05D006173 1.2e-15 86.3 69 58.0
Manes.01G013300 Manihot esculenta HOM05D000252 ORTHO05D006173 1.2e-15 86.3 69 60.9
Prupe.8G264400 Prunus persica HOM05D000252 ORTHO05D006173 1.2e-15 86.3 69 60.9
Aqoxy2G02648 Aquilegia oxysepala HOM05D000252 ORTHO05D006173 1.6e-15 85.9 69 62.3
Dinv14544 Davidia involucrata HOM05D000252 ORTHO05D006173 1.6e-15 85.9 69 62.3
QL07p028735 Quercus lobata HOM05D000252 ORTHO05D006173 1.6e-15 85.9 69 63.8
RcHm_v2.0_Chr2g0131741 Rosa chinensis HOM05D000252 ORTHO05D006173 1.6e-15 85.9 69 59.4
Thecc.04G309700 Theobroma cacao HOM05D000252 ORTHO05D006173 1.6e-15 85.9 69 62.3
FAN14G4665 Fragaria x ananassa HOM05D000252 ORTHO05D006173 2.6e-15 85.1 69 56.5
Rhsim02G0119800 Rhododendron simsii HOM05D000252 ORTHO05D006173 2.6e-15 85.1 69 62.3
MD15G1141600 Malus domestica HOM05D000252 ORTHO05D006173 3.5e-15 84.7 69 58.0
Migut.H01382 Erythranthe guttata HOM05D000252 ORTHO05D006173 5.9e-15 84.0 69 62.3
Potri.001G453500 Populus trichocarpa HOM05D000252 ORTHO05D006173 5.9e-15 84.0 69 58.0
Cc09_g09590 Coffea canephora HOM05D000252 ORTHO05D006173 1.0e-14 83.2 69 59.4
Lj2C148T2 Lonicera japonica HOM05D000252 ORTHO05D006173 1.0e-14 83.2 69 58.0
RcHm_v2.0_Chr5g0041951 Rosa chinensis HOM05D001077 ORTHO05D006173 1.0e-14 83.2 69 59.4
RcHm_v2.0_Chr6g0247031 Rosa chinensis HOM05D000252 ORTHO05D006173 1.0e-14 83.2 69 59.4
GSVIVG01035561001 Vitis vinifera HOM05D000252 ORTHO05D006173 1.0e-14 83.2 67 64.2
Ciclev10001762m.g Citrus clementina HOM05D000252 ORTHO05D006173 1.3e-14 82.8 69 60.9
Sed0023253 Sechium edule HOM05D000252 ORTHO05D006173 1.3e-14 82.8 69 59.4
PGR031G2150 Punica granatum HOM05D000252 ORTHO05D006173 1.7e-14 82.4 68 63.2
MSTRG.14758 Avicennia marina HOM05D000252 ORTHO05D006173 2.2e-14 82.0 69 58.0
ECA246G4804 Erigeron canadensis HOM05D001361 ORTHO05D006173 3.8e-14 81.3 69 56.5
HanXRQChr06g0172631 Helianthus annuus HOM05D000252 ORTHO05D006173 3.8e-14 81.3 69 58.0
ClCG01G007270 Citrullus lanatus HOM05D000252 ORTHO05D006173 6.5e-14 80.5 75 58.7
Sed0009717 Sechium edule HOM05D000252 ORTHO05D006173 6.5e-14 80.5 69 58.0
Lsat_1_v5_gn_5_112420 Lactuca sativa HOM05D000252 ORTHO05D006173 8.5e-14 80.1 69 55.1
Medtr3g009200 Medicago truncatula HOM05D000252 ORTHO05D006173 1.1e-13 79.7 62 71.0
AUR62029802 Chenopodium quinoa HOM05D000252 ORTHO05D006173 1.5e-13 79.3 69 55.1
THA.LOC104816406 Tarenaya hassleriana HOM05D000252 ORTHO05D006173 1.5e-13 79.3 69 58.0
PGSC0003DMG400008940 Solanum tuberosum HOM05D000252 ORTHO05D006173 1.9e-13 79.0 67 55.2
Aa31LG1G21250 Aethionema arabicum HOM05D000252 ORTHO05D006173 2.5e-13 78.6 75 56.0
CANSAT01G0545 Cannabis sativa HOM05D000252 ORTHO05D006173 2.5e-13 78.6 69 52.2
Peaxi162Scf01205g00153 Petunia axillaris HOM05D000252 ORTHO05D006173 2.5e-13 78.6 67 55.2
Sopen09g004890 Solanum pennellii HOM05D000252 ORTHO05D006173 2.5e-13 78.6 67 56.7
EL10Ac7g17138 Beta vulgaris HOM05D000252 ORTHO05D006173 3.2e-13 78.2 69 55.1
Solyc09g010150.4 Solanum lycopersicum HOM05D000252 ORTHO05D006173 3.2e-13 78.2 67 55.2
CsaV3_5G018710 Cucumis sativus L. HOM05D000252 ORTHO05D006173 4.2e-13 77.8 69 55.1
Haze_09230 Corylus avellana HOM05D000252 ORTHO05D006173 7.2e-13 77.0 71 59.2
AL6G13700 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 2.1e-12 75.5 69 53.6
AT5G04070 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 2.1e-12 75.5 69 55.1
CAN.G397.84 Capsicum annuum HOM05D000252 ORTHO05D006173 2.1e-12 75.5 67 53.7
CARHR197370 Cardamine hirsuta HOM05D000252 ORTHO05D006173 2.1e-12 75.5 67 58.2
BcaC03g18461 Brassica carinata HOM05D000252 ORTHO05D006173 3.6e-12 74.7 69 52.2
BcaNung02217 Brassica carinata HOM05D000252 ORTHO05D006173 3.6e-12 74.7 69 52.2
A02p03310 Brassica napus HOM05D005209 ORTHO05D006188 3.6e-12 74.7 69 52.2
A10p32050 Brassica napus HOM05D000087 ORTHO05D006949 3.6e-12 74.7 69 55.1
C02p08070 Brassica napus HOM05D005209 ORTHO05D006188 3.6e-12 74.7 69 52.2
BolC2t06729H Brassica oleracea HOM05D005209 ORTHO05D006188 3.6e-12 74.7 69 52.2
BraA10t45249Z Brassica rapa HOM05D000252 ORTHO05D006173 3.6e-12 74.7 69 55.1
Sp6g28170 Schrenkiella parvula HOM05D000252 ORTHO05D006173 3.6e-12 74.7 69 53.6
TPR.G17297 Trifolium pratense HOM05D000252 ORTHO05D006173 4.7e-12 74.3 42 90.5
BcaC06g32112 Brassica carinata HOM05D000252 ORTHO05D006173 6.1e-12 73.9 69 53.6
MBI04_g45215_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D006173 6.1e-12 73.9 71 53.5
SalBow7G4413 Salvia bowleyana HOM05D000252 ORTHO05D006173 6.1e-12 73.9 69 53.6
Peaxi162Scf00069g00511 Petunia axillaris HOM05D000252 ORTHO05D006173 8.0e-12 73.6 67 52.2
Aa31LG11G13660 Aethionema arabicum HOM05D000252 ORTHO05D006173 1.0e-11 73.2 68 54.4
BraA02t05302Z Brassica rapa HOM05D000252 ORTHO05D006173 1.0e-11 73.2 69 50.7
Carub.0006s0303 Capsella rubella HOM05D000252 ORTHO05D006173 1.0e-11 73.2 75 53.3
Thhalv10007998m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 1.0e-11 73.2 70 55.7
CARHR209200 Cardamine hirsuta HOM05D000252 ORTHO05D006173 1.4e-11 72.8 69 52.2
Ah.08g209090 Amaranthus hybridus HOM05D000252 ORTHO05D006173 2.3e-11 72.0 69 56.5
AT5G15940 Arabidopsis thaliana HOM05D000252 ORTHO05D006173 2.3e-11 72.0 69 52.2
Carub.0006s1413 Capsella rubella HOM05D000252 ORTHO05D006173 2.3e-11 72.0 69 53.6
Eucgr.E01120 Eucalyptus grandis HOM05D000252 ORTHO05D006173 2.3e-11 72.0 69 53.6
PSO566G0118 Papaver somniferum HOM05D000252 ORTHO05D006173 2.3e-11 72.0 69 53.6
C09p72770 Brassica napus HOM05D000087 ORTHO05D006949 3.0e-11 71.6 69 53.6
BolC9t60015H Brassica oleracea HOM05D000087 ORTHO05D006949 3.0e-11 71.6 69 53.6
Eucgr.E01111 Eucalyptus grandis HOM05D000252 ORTHO05D006173 4.0e-11 71.2 69 53.6
Thhalv10013855m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 4.0e-11 71.2 68 52.9
PSO782G5386 Papaver somniferum HOM05D000252 ORTHO05D006173 4.0e-11 71.2 69 53.6
AL6G26820 Arabidopsis lyrata HOM05D000252 ORTHO05D006173 5.2e-11 70.9 69 53.6
Oeu021515.1 Olea europaea HOM05D000252 ORTHO05D006173 5.2e-11 70.9 69 58.0
BcaNung02216 Brassica carinata HOM05D000252 ORTHO05D006173 6.7e-11 70.5 69 49.3
Sp6g38670 Schrenkiella parvula HOM05D000252 ORTHO05D006173 8.8e-11 70.1 69 53.6
unitig_61.g26060 Utricularia gibba HOM05D000252 ORTHO05D006173 8.8e-11 70.1 66 53.0
HPP92_005571 Vanilla planifolia HOM05D000252 ORTHO05D006173 1.1e-10 69.7 69 50.7
Sc02g0006450 Simmondsia chinensis HOM05D000252 ORTHO05D006173 2.2e-09 65.5 66 53.0
Sc02g0006460 Simmondsia chinensis HOM05D000252 ORTHO05D006173 2.2e-09 65.5 66 53.0
Thhalv10013899m.g Eutrema salsugineum HOM05D000252 ORTHO05D006173 3.7e-09 64.7 68 47.1
ATR0824G073 Amborella trichopoda HOM05D000252 ORTHO05D006173 1.1e-08 63.2 72 44.4
SEGI_33256 Sequoiadendron giganteum HOM05D000252 ORTHO05D006173 1.4e-08 62.8 54 57.4
Sc02g0006470 Simmondsia chinensis HOM05D000252 ORTHO05D006173 3.1e-08 61.6 66 51.5
Os09g0346600 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D006173 1.2e-07 59.7 55 52.7
Zm00001eb310490 Zea mays HOM05D000252 ORTHO05D006173 2.0e-07 58.9 55 52.7
Nitab4.5_0000573g0180 Nicotiana tabacum HOM05D000252 ORTHO05D006173 3.5e-07 58.2 41 65.9
SEGI_02143 Sequoiadendron giganteum HOM05D000252 ORTHO05D006173 3.5e-07 58.2 51 56.9
Atru.chr9.1816 Acer truncatum HOM05D000252 ORTHO05D006173 4.5e-07 57.8 41 68.3
RcHm_v2.0_Chr7g0230151 Rosa chinensis HOM05D000252 ORTHO05D006173 2.2e-06 55.5 45 62.2


User provided reference genes

Program Settings