Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 7.4e-56 220.3 112 100.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 2.6e-53 211.8 112 97.3
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 7.1e-51 203.8 113 93.8
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.9e-48 195.7 113 90.3
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.8e-47 191.8 113 87.6
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.2e-44 182.2 99 96.0
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.4e-43 179.5 105 89.5
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 4.2e-43 177.9 108 85.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 9.3e-43 176.8 100 90.0
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.1e-42 175.6 102 87.3
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 6.1e-42 174.1 106 83.0
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 6.1e-42 174.1 106 82.1
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 7.9e-42 173.7 111 77.5
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.0e-41 173.3 100 85.0
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.3e-41 172.9 106 82.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.8e-41 172.6 106 83.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.8e-41 172.6 105 79.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.8e-41 172.6 105 79.0
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.1e-40 169.9 102 83.3
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.9e-40 169.1 106 79.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.5e-40 168.7 102 80.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.7e-40 167.5 106 78.3
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.4e-40 167.2 103 81.6
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.4e-40 167.2 103 81.6
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 7.4e-40 167.2 103 79.6
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.3e-39 166.4 101 79.2
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.3e-39 166.4 106 78.3
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.7e-39 166.0 106 77.4
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 3.7e-39 164.9 108 78.7
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 8.2e-39 163.7 102 77.5
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.1e-38 163.3 101 80.2
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.8e-38 162.5 102 76.5
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.4e-38 162.2 100 77.0
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.3e-38 161.0 106 74.5
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 5.3e-38 161.0 105 77.1
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.3e-38 161.0 105 77.1
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 6.9e-38 160.6 106 74.5
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 9.1e-38 160.2 107 74.8
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.2e-37 159.8 111 73.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.2e-37 159.8 106 75.5
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.2e-37 159.8 106 73.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.5e-37 159.5 102 74.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.5e-37 159.5 102 77.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 74.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 77.5
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 75.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 75.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 75.5
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.0e-37 159.1 109 80.7
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.0e-37 159.1 105 76.2
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 2.6e-37 158.7 102 77.5
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.6e-37 158.7 107 73.8
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 5.9e-37 157.5 107 73.8
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.9e-37 157.5 102 74.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.9e-37 157.5 102 74.5
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 7.7e-37 157.1 112 71.4
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 7.7e-37 157.1 112 71.4
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 7.7e-37 157.1 102 71.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 7.7e-37 157.1 102 74.5
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.7e-36 156.0 107 75.7
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 2.2e-36 155.6 110 74.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 6.5e-36 154.1 103 75.7
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 6.5e-36 154.1 107 74.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.5e-36 153.7 107 72.9
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.5e-36 153.7 105 73.3
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 8.5e-36 153.7 105 73.3
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-35 153.3 107 72.9
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-35 153.3 107 72.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 2.5e-35 152.1 105 75.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.5e-35 152.1 100 75.0
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 3.2e-35 151.8 103 75.7
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 7.2e-35 150.6 111 71.2
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.2e-34 149.8 107 72.0
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.6e-34 149.4 111 70.3
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.6e-34 149.4 102 74.5
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-34 148.7 107 72.0
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.1e-34 147.5 103 72.8
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.1e-34 147.5 111 70.3
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.8e-33 146.0 106 70.8
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.3e-33 145.6 107 68.2
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 3.0e-33 145.2 109 69.7
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 3.9e-33 144.8 107 67.3
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 3.9e-33 144.8 107 68.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.9e-33 144.8 99 75.8
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.9e-33 144.8 107 70.1
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.1e-33 144.4 107 70.1
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 5.1e-33 144.4 106 69.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.1e-32 143.3 106 71.7
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.5e-32 142.9 109 68.8
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.5e-32 142.9 109 68.8
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.5e-32 142.9 109 68.8
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.5e-32 142.9 103 69.9
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.0e-32 142.5 110 67.3
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.6e-32 142.1 103 69.9
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.6e-32 142.1 103 69.9
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.6e-32 142.1 90 73.3
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-32 142.1 105 66.7
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 3.3e-32 141.7 99 73.7
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 4.4e-32 141.4 109 68.8
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 4.4e-32 141.4 102 67.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.7e-32 140.2 108 73.1
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.3e-31 139.8 104 70.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.3e-31 139.8 107 64.5
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 4.8e-31 137.9 102 70.6
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.8e-31 137.9 94 73.4
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 4.8e-31 137.9 92 77.2
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 6.3e-31 137.5 105 64.8
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.1e-30 136.7 113 62.8
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.1e-30 136.7 106 67.0
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.8e-30 136.0 108 70.4
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 2.0e-29 132.5 100 69.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.4e-29 131.7 105 63.8
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.5e-29 131.3 102 64.7
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 5.9e-29 131.0 80 80.0
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 5.9e-29 131.0 106 63.2
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 7.7e-29 130.6 81 85.2
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 5.0e-28 127.9 99 60.6
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 5.0e-28 127.9 106 64.2
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.5e-28 127.1 103 64.1
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.5e-27 125.6 104 63.5
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.1e-26 122.5 105 61.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 1.0e-25 120.2 102 62.7
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.8e-23 112.1 105 59.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.8e-23 112.1 105 59.0
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 8.2e-23 110.5 108 54.6
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.1e-22 110.2 102 55.9
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.8e-22 109.4 110 54.5
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 4.1e-22 108.2 107 55.1
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 106.7 108 53.7
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-21 105.9 87 64.4
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.6e-21 105.5 109 53.2
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 2.6e-21 105.5 105 54.3
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-21 105.1 52 96.2
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 5.9e-21 104.4 107 53.3
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.7e-21 104.0 104 55.8
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 7.7e-21 104.0 104 53.8
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.7e-20 102.8 107 54.2
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.2e-20 102.4 102 55.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.9e-20 102.1 103 53.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 5.0e-20 101.3 87 65.5
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 5.0e-20 101.3 58 91.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 5.5e-19 97.8 104 53.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 8.0e-18 94.0 101 46.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 6.7e-17 90.9 90 57.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.3e-15 86.7 73 68.5
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.8e-15 85.5 102 48.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.1e-14 83.6 49 85.7
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 3.1e-14 82.0 104 47.1
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 1.6e-13 79.7 50 80.0
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.6e-13 79.7 67 58.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 4.5e-13 78.2 93 41.9
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.3e-12 76.6 109 40.4
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.2e-12 75.9 58 67.2
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.6e-10 68.6 51 68.6
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 4.7e-10 68.2 61 62.3
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 4.7e-10 68.2 67 53.7
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.8e-09 66.2 107 37.4
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.8e-09 63.9 40 75.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.3e-07 60.1 96 42.7
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.8e-06 56.2 58 53.4
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 4.1e-06 55.1 55 49.1
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 9.1e-06 53.9 64 45.3
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 9.1e-06 53.9 52 51.9


User provided reference genes

Program Settings