Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 5.3e-41 170.6 89 100.0
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 7.2e-38 160.2 88 92.0
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 7.2e-38 160.2 95 91.6
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-36 156.0 87 90.8
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-36 156.0 87 90.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.9e-36 154.5 87 89.7
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.9e-36 154.5 87 89.7
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.9e-36 154.5 87 88.5
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 8.8e-36 153.3 86 88.4
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.1e-35 152.9 87 87.4
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.1e-35 152.9 87 87.4
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.4e-35 151.0 88 86.4
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.4e-35 151.0 87 86.2
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 4.4e-35 151.0 89 85.4
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 7.4e-35 150.2 89 84.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 3.7e-34 147.9 88 85.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 4.8e-34 147.5 89 84.3
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 6.3e-34 147.1 89 84.3
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.4e-33 146.0 88 84.1
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.4e-33 145.2 89 82.0
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 3.1e-33 144.8 89 79.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 7.0e-33 143.7 89 79.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.6e-32 141.7 88 81.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 4.5e-32 141.0 88 77.3
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.9e-32 140.6 88 75.0
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 5.9e-32 140.6 88 76.1
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 5.9e-32 140.6 88 79.5
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 7.7e-32 140.2 88 76.1
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.0e-31 139.8 88 78.4
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-31 139.4 88 75.0
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-31 139.4 88 75.0
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.7e-31 139.0 88 75.0
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.9e-31 138.3 87 74.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 2.9e-31 138.3 88 79.5
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.9e-31 138.3 85 78.8
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 3.8e-31 137.9 88 75.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.8e-31 137.9 86 77.9
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 6.5e-31 137.1 88 75.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 8.5e-31 136.7 88 75.0
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 8.5e-31 136.7 88 73.9
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-30 136.3 88 73.9
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.5e-30 136.0 85 76.5
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.9e-30 135.6 88 76.1
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.2e-30 134.8 88 73.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.2e-30 134.8 89 75.3
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 3.2e-30 134.8 88 73.9
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.2e-30 134.8 88 76.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.2e-30 134.8 88 73.9
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.2e-30 134.4 89 75.3
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.2e-30 134.4 88 70.5
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.2e-30 134.4 87 73.6
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 4.2e-30 134.4 87 75.9
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 5.5e-30 134.0 87 75.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 5.5e-30 134.0 87 74.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 5.5e-30 134.0 87 73.6
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 5.5e-30 134.0 88 72.7
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 7.2e-30 133.7 88 73.9
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 9.4e-30 133.3 88 73.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.2e-29 132.9 87 73.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.6e-29 132.5 87 73.6
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.6e-29 132.5 88 73.9
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.6e-29 132.5 87 72.4
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.6e-29 132.5 88 70.5
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.1e-29 132.1 87 73.6
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.1e-29 132.1 88 72.7
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.1e-29 132.1 86 75.6
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.7e-29 131.7 88 75.0
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.7e-29 131.7 87 73.6
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.7e-29 131.7 87 72.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.7e-29 131.7 87 73.6
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.6e-29 131.3 87 73.6
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 3.6e-29 131.3 87 73.6
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.7e-29 131.0 87 70.1
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 4.7e-29 131.0 88 70.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.7e-29 131.0 88 72.7
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 4.7e-29 131.0 85 75.3
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 8.0e-29 130.2 86 73.3
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 8.0e-29 130.2 88 72.7
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 8.0e-29 130.2 87 71.3
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.0e-28 129.8 88 69.3
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.0e-28 129.8 88 71.6
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.0e-28 129.8 84 77.4
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.4e-28 129.4 86 73.3
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.4e-28 129.4 86 73.3
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.8e-28 129.0 88 71.6
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.3e-28 128.6 88 71.6
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.3e-28 128.6 88 69.3
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.0e-28 128.3 88 71.6
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.0e-28 128.3 88 70.5
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.0e-28 128.3 87 73.6
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.0e-28 127.9 87 70.1
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 5.2e-28 127.5 86 73.3
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 5.2e-28 127.5 86 73.3
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 5.2e-28 127.5 86 73.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.2e-28 127.5 87 66.7
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 6.7e-28 127.1 85 70.6
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 6.7e-28 127.1 84 73.8
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 6.7e-28 127.1 88 69.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 6.7e-28 127.1 87 72.4
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 8.8e-28 126.7 87 69.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-27 126.3 86 70.9
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.5e-27 125.9 88 68.2
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.5e-27 125.9 86 72.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-27 125.6 86 72.1
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.0e-27 125.6 88 70.5
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.0e-27 125.6 89 68.5
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 2.6e-27 125.2 86 70.9
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 3.3e-27 124.8 88 68.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.3e-27 124.8 88 68.2
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.3e-27 124.8 88 68.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 5.7e-27 124.0 82 74.4
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 7.5e-27 123.6 86 70.9
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 7.5e-27 123.6 86 70.9
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.5e-27 123.6 82 72.0
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.3e-26 122.9 86 70.9
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.7e-26 122.5 86 69.8
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.7e-26 122.5 86 70.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.7e-26 122.5 85 69.4
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.2e-26 122.1 87 66.7
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.2e-26 122.1 86 67.4
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.2e-26 122.1 87 70.1
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.8e-26 121.7 86 70.9
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.7e-26 121.3 88 67.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 3.7e-26 121.3 83 71.1
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.3e-26 120.6 88 67.0
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.3e-26 120.6 81 71.6
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 6.3e-26 120.6 86 69.8
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.1e-25 119.8 86 68.6
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.4e-25 119.4 86 68.6
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.4e-25 119.4 81 70.4
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.8e-25 119.0 87 69.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.4e-25 118.6 87 67.8
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.1e-25 118.2 87 69.0
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 3.1e-25 118.2 87 67.8
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.0e-25 117.1 84 66.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 9.1e-25 116.7 110 56.4
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.6e-24 115.9 77 74.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.5e-24 114.8 85 69.4
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 3.5e-24 114.8 85 65.9
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 4.5e-24 114.4 86 67.4
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.0e-23 113.2 85 64.7
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.3e-23 112.8 76 75.0
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.2e-23 112.1 76 73.7
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 5.0e-23 110.9 86 61.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.5e-22 109.4 84 61.9
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.5e-22 109.4 82 64.6
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 3.2e-22 108.2 85 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.3e-20 102.1 84 56.0
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.5e-19 99.4 89 58.4
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.0e-16 89.0 83 53.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.0e-16 89.0 83 53.0
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.9e-16 87.4 83 53.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 6.6e-15 84.0 77 53.2
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 2.3e-12 75.5 72 52.8
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 8.3e-10 67.0 34 94.1
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 4.1e-09 64.7 54 59.3
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 7.0e-09 63.9 76 43.4
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 9.2e-09 63.5 33 87.9
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 5.0e-07 57.8 60 45.0
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.0e-07 57.8 39 71.8
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 5.0e-07 57.8 51 54.9
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.5e-06 56.2 89 40.4


User provided reference genes

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