Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 3.9e-13 76.6 33 100.0
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 3.9e-13 76.6 33 100.0
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 3.9e-13 76.6 33 100.0
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 5.1e-13 76.3 33 97.0
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 5.1e-13 76.3 33 97.0
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 5.1e-13 76.3 33 97.0
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 8.6e-13 75.5 33 97.0
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 8.6e-13 75.5 33 97.0
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 8.6e-13 75.5 33 97.0
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.1e-12 75.1 33 93.9
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.5e-12 73.9 33 90.9
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.3e-12 73.2 33 93.9
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 4.3e-12 73.2 33 90.9
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 4.3e-12 73.2 33 90.9
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 4.3e-12 73.2 33 90.9
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 5.6e-12 72.8 33 90.9
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 5.6e-12 72.8 33 93.9
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 5.6e-12 72.8 33 90.9
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 7.3e-12 72.4 32 90.6
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.3e-12 72.4 33 90.9
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 7.3e-12 72.4 33 90.9
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 7.3e-12 72.4 33 90.9
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 7.3e-12 72.4 33 90.9
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 9.6e-12 72.0 32 93.8
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 9.6e-12 72.0 33 87.9
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 9.6e-12 72.0 32 93.8
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.2e-11 71.6 33 87.9
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.2e-11 71.6 33 87.9
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.2e-11 71.6 32 90.6
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.2e-11 71.6 33 90.9
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.2e-11 71.6 33 90.9
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.2e-11 71.6 33 90.9
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.2e-11 71.6 32 90.6
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.2e-11 71.6 33 87.9
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.2e-11 71.6 33 87.9
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.2e-11 71.6 32 90.6
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.6e-11 71.2 33 87.9
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.6e-11 71.2 32 93.8
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.6e-11 71.2 30 100.0
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.6e-11 71.2 33 87.9
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.6e-11 71.2 33 87.9
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.6e-11 71.2 30 100.0
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.6e-11 71.2 33 87.9
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.1e-11 70.9 33 87.9
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.1e-11 70.9 32 90.6
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.1e-11 70.9 32 90.6
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 2.1e-11 70.9 33 87.9
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 2.1e-11 70.9 32 90.6
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 2.1e-11 70.9 32 90.6
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.6e-11 70.1 32 87.5
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.6e-11 70.1 33 84.8
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.6e-11 70.1 32 87.5
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.6e-11 70.1 32 87.5
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.6e-11 70.1 32 87.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 3.6e-11 70.1 32 87.5
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.6e-11 70.1 33 84.8
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.6e-11 70.1 32 87.5
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 3.6e-11 70.1 33 84.8
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 4.7e-11 69.7 32 87.5
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.7e-11 69.7 32 87.5
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.7e-11 69.7 32 87.5
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 4.7e-11 69.7 32 87.5
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 4.7e-11 69.7 32 87.5
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 4.7e-11 69.7 30 93.3
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 4.7e-11 69.7 32 87.5
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 4.7e-11 69.7 33 87.9
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 6.2e-11 69.3 31 90.3
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 6.2e-11 69.3 33 87.9
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 6.2e-11 69.3 33 84.8
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.1e-11 68.9 32 90.6
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.1e-11 68.9 32 90.6
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 8.1e-11 68.9 30 93.3
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 8.1e-11 68.9 33 81.8
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 8.1e-11 68.9 30 93.3
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 8.1e-11 68.9 30 93.3
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.1e-10 68.6 33 84.8
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.4e-10 68.2 33 84.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.4e-10 68.2 33 84.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.4e-10 67.4 30 90.0
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 2.4e-10 67.4 32 84.4
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 3.1e-10 67.0 31 90.3
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 6.8e-10 65.9 30 86.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 6.8e-10 65.9 30 86.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 6.8e-10 65.9 30 86.7
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 6.8e-10 65.9 30 86.7
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 6.8e-10 65.9 33 87.9
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 8.9e-10 65.5 29 89.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 8.9e-10 65.5 29 89.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.2e-09 65.1 31 83.9
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 2.6e-09 63.9 30 83.3
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 2.6e-09 63.9 30 83.3
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.6e-09 63.9 31 80.6
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 2.6e-09 63.9 31 83.9
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 4.4e-09 63.2 29 86.2
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 4.4e-09 63.2 33 75.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 5.8e-09 62.8 30 80.0
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 5.8e-09 62.8 29 86.2
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 7.6e-09 62.4 29 82.8
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.3e-08 61.6 30 80.0
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.7e-08 61.2 33 72.7
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.7e-08 61.2 31 74.2
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 4.9e-08 59.7 33 72.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 1.2e-06 55.1 29 75.9
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 3.5e-06 53.5 33 69.7
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 6.0e-06 52.8 28 75.0
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 7.8e-06 52.4 26 73.1
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 7.8e-06 52.4 30 70.0


User provided reference genes

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