Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20386 Trifolium pratense HOM05D000277 ORTHO05D000214 8.6e-34 146.4 71 100.0
Medtr4g094842 Medicago truncatula HOM05D000277 ORTHO05D000214 3.3e-17 91.3 60 76.7
Ca_22151_v3 Cicer arietinum L. HOM05D000277 ORTHO05D000214 1.2e-16 89.4 54 79.6
Psat4g085200 Pisum sativum HOM05D000277 ORTHO05D000214 1.8e-15 85.5 70 64.3
Medtr4g094835 Medicago truncatula HOM05D000277 ORTHO05D000214 6.8e-15 83.6 73 63.0
Ca_22152_v3 Cicer arietinum L. HOM05D000277 ORTHO05D000214 2.6e-14 81.6 71 53.5
Medtr4g094832 Medicago truncatula HOM05D000277 ORTHO05D000214 2.6e-14 81.6 57 70.2
Medtr4g094838 Medicago truncatula HOM05D000277 ORTHO05D000214 3.4e-14 81.3 67 65.7
Ca_26875_v3 Cicer arietinum L. HOM05D000277 ORTHO05D000214 9.9e-14 79.7 57 66.7
Lj4g0013664 Lotus japonicus HOM05D000277 ORTHO05D000214 2.9e-13 78.2 71 56.3
Lj4g0001051 Lotus japonicus HOM05D000277 ORTHO05D000214 4.9e-13 77.4 54 66.7
Lj4g0022583 Lotus japonicus HOM05D000277 ORTHO05D000214 4.9e-13 77.4 54 66.7
Psat4g086240 Pisum sativum HOM05D000277 ORTHO05D000214 4.9e-13 77.4 70 54.3
TPR.G19070 Trifolium pratense HOM05D000277 ORTHO05D000214 8.3e-13 76.6 57 61.4
Lj4g0002963 Lotus japonicus HOM05D000277 ORTHO05D000214 1.9e-12 75.5 54 68.5
Medtr4g022825 Medicago truncatula HOM05D000277 ORTHO05D000214 2.4e-12 75.1 57 64.9
Medtr8g079710 Medicago truncatula HOM05D000277 ORTHO05D000214 2.4e-12 75.1 71 52.1
Medtr4g022290 Medicago truncatula HOM05D000277 ORTHO05D000214 4.1e-12 74.3 71 52.1
Glyma.17G152600 Glycine max HOM05D000277 ORTHO05D000214 5.4e-12 73.9 54 64.8
Medtr4g094825 Medicago truncatula HOM05D000277 ORTHO05D000214 5.4e-12 73.9 74 54.1
Gorai.010G034300 Gossypium raimondii HOM05D000277 ORTHO05D000214 9.2e-12 73.2 60 63.3
Medtr8g041770 Medicago truncatula HOM05D000277 ORTHO05D000214 9.2e-12 73.2 57 64.9
Medtr0190s0020 Medicago truncatula HOM05D000277 ORTHO05D000214 1.2e-11 72.8 69 53.6
Glyma.05G092400 Glycine max HOM05D000277 ORTHO05D000214 1.6e-11 72.4 54 63.0
Atru.chr3.296 Acer truncatum HOM05D000277 ORTHO05D000214 2.1e-11 72.0 60 58.3
COL.COLO4_34863 Corchorus olitorius HOM05D000277 ORTHO05D000214 2.1e-11 72.0 54 63.0
TWI73G0807 Tripterygium wilfordii HOM05D000277 ORTHO05D000214 2.1e-11 72.0 54 61.1
TWI73G1047 Tripterygium wilfordii HOM05D000277 ORTHO05D000214 2.1e-11 72.0 54 61.1
TPR.G20291 Trifolium pratense HOM05D000277 ORTHO05D000214 2.7e-11 71.6 57 66.7
COL.COLO4_34854 Corchorus olitorius HOM05D000277 ORTHO05D000214 3.5e-11 71.2 60 58.3
COL.COLO4_34862 Corchorus olitorius HOM05D000277 ORTHO05D000214 3.5e-11 71.2 60 60.0
Dinv30004 Davidia involucrata HOM05D000277 ORTHO05D000214 3.5e-11 71.2 60 60.0
Gohir.A06G031950 Gossypium hirsutum HOM05D000277 ORTHO05D000214 3.5e-11 71.2 60 61.7
CSS0042989 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D000214 4.6e-11 70.9 59 62.7
Thecc.01G059600 Theobroma cacao HOM05D000277 ORTHO05D000214 4.6e-11 70.9 54 63.0
Duzib147G1499 Durio zibethinus HOM05D000277 ORTHO05D000214 6.0e-11 70.5 60 60.0
Duzib147G1642 Durio zibethinus HOM05D000277 ORTHO05D000214 6.0e-11 70.5 60 60.0
Psat0s2452g0160 Pisum sativum HOM05D000277 ORTHO05D000214 6.0e-11 70.5 61 55.7
Psat7g232520 Pisum sativum HOM05D000277 ORTHO05D000214 6.0e-11 70.5 57 63.2
COL.COLO4_34858 Corchorus olitorius HOM05D000277 ORTHO05D000214 7.8e-11 70.1 60 56.7
COL.COLO4_34861 Corchorus olitorius HOM05D000277 ORTHO05D000214 7.8e-11 70.1 60 56.7
COL.COLO4_34864 Corchorus olitorius HOM05D000277 ORTHO05D000214 7.8e-11 70.1 60 56.7
COL.COLO4_30665 Corchorus olitorius HOM05D000277 ORTHO05D000214 1.0e-10 69.7 54 59.3
COL.COLO4_34851 Corchorus olitorius HOM05D000277 ORTHO05D000214 1.0e-10 69.7 71 50.7
QL02p030529 Quercus lobata HOM05D000277 ORTHO05D000214 1.0e-10 69.7 59 59.3
COL.COLO4_35953 Corchorus olitorius HOM05D000277 ORTHO05D000214 1.3e-10 69.3 71 50.7
QL02p030510 Quercus lobata HOM05D000277 ORTHO05D000214 1.3e-10 69.3 59 59.3
QL02p030578 Quercus lobata HOM05D000277 ORTHO05D000214 1.3e-10 69.3 59 59.3
QL04p095004 Quercus lobata HOM05D000277 ORTHO05D000214 1.3e-10 69.3 59 59.3
Medtr3g088420 Medicago truncatula HOM05D000277 ORTHO05D000214 1.7e-10 68.9 57 63.2
Psat4g144200 Pisum sativum HOM05D000277 ORTHO05D000214 1.7e-10 68.9 57 57.9
Rhsim09G0112500 Rhododendron simsii HOM05D000277 ORTHO05D000214 1.7e-10 68.9 59 61.0
CSS0028768 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D000214 2.3e-10 68.6 59 61.0
Cfa016738 Carpinus fangiana HOM05D000277 ORTHO05D000214 3.0e-10 68.2 60 60.0
COL.COLO4_11448 Corchorus olitorius HOM05D000277 ORTHO05D000214 3.0e-10 68.2 59 55.9
Medtr4g022720 Medicago truncatula HOM05D000277 ORTHO05D000214 3.0e-10 68.2 57 61.4
VMungo0251G1502 Vigna mungo HOM05D000277 ORTHO05D000214 3.0e-10 68.2 54 61.1
arahy.Tifrunner.gnm1.ann1.YPC5LP Arachis hypogaea HOM05D000277 ORTHO05D000214 3.9e-10 67.8 58 55.2
Dinv30005 Davidia involucrata HOM05D000277 ORTHO05D000214 3.9e-10 67.8 59 61.0
Medtr4g022670 Medicago truncatula HOM05D000277 ORTHO05D000214 3.9e-10 67.8 57 63.2
Medtr4g094828 Medicago truncatula HOM05D000277 ORTHO05D000214 3.9e-10 67.8 71 46.5
Psat4g190760 Pisum sativum HOM05D000277 ORTHO05D000214 3.9e-10 67.8 57 59.6
Thecc.01G059900 Theobroma cacao HOM05D000277 ORTHO05D000214 3.9e-10 67.8 59 57.6
Haze_08902 Corylus avellana HOM05D000277 ORTHO05D000214 5.1e-10 67.4 60 58.3
Rhsim10G0114800 Rhododendron simsii HOM05D000277 ORTHO05D000214 5.1e-10 67.4 60 53.3
Rhsim09G0112200 Rhododendron simsii HOM05D000277 ORTHO05D000214 6.6e-10 67.0 59 57.6
Thecc.06G112000 Theobroma cacao HOM05D000277 ORTHO05D000214 6.6e-10 67.0 68 45.6
VMungo0251G1490 Vigna mungo HOM05D000277 ORTHO05D000214 6.6e-10 67.0 60 55.0
Gohir.D11G201100 Gossypium hirsutum HOM05D000277 ORTHO05D000214 8.6e-10 66.6 59 57.6
Gorai.007G215600 Gossypium raimondii HOM05D000277 ORTHO05D000214 8.6e-10 66.6 59 57.6
Manes.13G121300 Manihot esculenta HOM05D000277 ORTHO05D000214 8.6e-10 66.6 71 50.7
Medtr7g026860 Medicago truncatula HOM05D000277 ORTHO05D000214 8.6e-10 66.6 57 57.9
Potri.003G057001 Populus trichocarpa HOM05D000277 ORTHO05D000214 8.6e-10 66.6 60 56.7
Rhsim09G0112300 Rhododendron simsii HOM05D000277 ORTHO05D000214 8.6e-10 66.6 59 61.0
TPR.G5565 Trifolium pratense HOM05D000277 ORTHO05D000214 8.6e-10 66.6 57 57.9
arahy.Tifrunner.gnm1.ann1.LG7CZ2 Arachis hypogaea HOM05D000277 ORTHO05D000214 1.1e-09 66.2 58 55.2
Gohir.A05G134800 Gossypium hirsutum HOM05D000277 ORTHO05D000214 1.1e-09 66.2 60 53.3
Medtr6g016815 Medicago truncatula HOM05D000277 ORTHO05D000214 1.1e-09 66.2 57 56.1
Sabra03G0032500 Salix brachista HOM05D000277 ORTHO05D000214 1.1e-09 66.2 60 58.3
Gorai.007G215500 Gossypium raimondii HOM05D000277 ORTHO05D000214 1.5e-09 65.9 53 52.8
Lalb_Chr10g0099561 Lupinus albus HOM05D000277 ORTHO05D000214 1.5e-09 65.9 55 60.0
Medtr8g040760 Medicago truncatula HOM05D000277 ORTHO05D000214 1.5e-09 65.9 57 59.6
Psat5g209320 Pisum sativum HOM05D000277 ORTHO05D000214 1.9e-09 65.5 56 60.7
arahy.Tifrunner.gnm1.ann1.5JI0ZF Arachis hypogaea HOM05D000277 ORTHO05D000214 2.5e-09 65.1 58 53.4
arahy.Tifrunner.gnm1.ann1.LFZN7F Arachis hypogaea HOM05D000277 ORTHO05D000214 2.5e-09 65.1 58 53.4
CSS0003946 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D000214 2.5e-09 65.1 59 57.6
COL.COLO4_26939 Corchorus olitorius HOM05D000277 ORTHO05D000214 2.5e-09 65.1 71 46.5
Haze_15374 Corylus avellana HOM05D000277 ORTHO05D000214 2.5e-09 65.1 60 58.3
Gohir.A11G195000 Gossypium hirsutum HOM05D000277 ORTHO05D000214 2.5e-09 65.1 59 57.6
Medtr4g022760 Medicago truncatula HOM05D000277 ORTHO05D000214 2.5e-09 65.1 57 61.4
Medtr4g022800 Medicago truncatula HOM05D000277 ORTHO05D000214 2.5e-09 65.1 57 56.1
Medtr6g034495 Medicago truncatula HOM05D000277 ORTHO05D000214 2.5e-09 65.1 54 55.6
Phvul.003G242200 Phaseolus vulgaris HOM05D000277 ORTHO05D000214 2.5e-09 65.1 54 61.1
Psat4g190560 Pisum sativum HOM05D000277 ORTHO05D000214 2.5e-09 65.1 57 56.1
QL07p002966 Quercus lobata HOM05D000277 ORTHO05D000214 2.5e-09 65.1 59 57.6
Peaxi162Scf00549g00015 Petunia axillaris HOM05D000277 ORTHO05D000214 3.3e-09 64.7 60 58.3
Potri.003G057100 Populus trichocarpa HOM05D000277 ORTHO05D000214 3.3e-09 64.7 60 55.0
Cfa001122 Carpinus fangiana HOM05D000277 ORTHO05D000214 4.3e-09 64.3 60 58.3
CiPaw.02G007500 Carya illinoinensis HOM05D000277 ORTHO05D000214 4.3e-09 64.3 56 58.9
QL06p040725 Quercus lobata HOM05D000277 ORTHO05D000214 4.3e-09 64.3 61 55.7
Cfa020387 Carpinus fangiana HOM05D000277 ORTHO05D000214 5.6e-09 63.9 55 56.4
COL.COLO4_14972 Corchorus olitorius HOM05D000277 ORTHO05D000214 5.6e-09 63.9 71 49.3
Haze_15375 Corylus avellana HOM05D000277 ORTHO05D000214 5.6e-09 63.9 60 56.7
Potri.003G057200 Populus trichocarpa HOM05D000277 ORTHO05D000214 5.6e-09 63.9 60 55.0
Solyc12g096250.2 Solanum lycopersicum HOM05D000277 ORTHO05D000214 5.6e-09 63.9 62 54.8
Sopen12g032110 Solanum pennellii HOM05D000277 ORTHO05D000214 5.6e-09 63.9 62 54.8
Haze_15388 Corylus avellana HOM05D000277 ORTHO05D000214 7.3e-09 63.5 61 57.4
CiPaw.02G007400 Carya illinoinensis HOM05D000277 ORTHO05D000214 9.5e-09 63.2 56 57.1
Gohir.A11G194800 Gossypium hirsutum HOM05D000277 ORTHO05D000214 9.5e-09 63.2 51 56.9
QL07p002987 Quercus lobata HOM05D000277 ORTHO05D000214 9.5e-09 63.2 59 55.9
Actinidia14851 Actinidia chinensis HOM05D000277 ORTHO05D000214 1.2e-08 62.8 54 59.3
Duzib187G0710 Durio zibethinus HOM05D000277 ORTHO05D000214 1.2e-08 62.8 59 52.5
Gorai.007G215300 Gossypium raimondii HOM05D000277 ORTHO05D000214 1.2e-08 62.8 60 53.3
Migut.I00185 Erythranthe guttata HOM05D000277 ORTHO05D000214 1.6e-08 62.4 60 53.3
Gohir.D11G201000 Gossypium hirsutum HOM05D000277 ORTHO05D000214 1.6e-08 62.4 53 50.9
Lalb_Chr10g0099551 Lupinus albus HOM05D000277 ORTHO05D000214 1.6e-08 62.4 55 54.5
MD02G1175500 Malus domestica HOM05D000277 ORTHO05D000214 1.6e-08 62.4 60 58.3
Medtr3g026310 Medicago truncatula HOM05D000277 ORTHO05D000214 1.6e-08 62.4 56 53.6
CiPaw.01G015900 Carya illinoinensis HOM05D000277 ORTHO05D000214 2.1e-08 62.0 59 54.2
COL.COLO4_34859 Corchorus olitorius HOM05D000277 ORTHO05D000214 2.1e-08 62.0 60 53.3
Manes.13G121400 Manihot esculenta HOM05D000277 ORTHO05D000214 2.1e-08 62.0 60 58.3
QL07p002929 Quercus lobata HOM05D000277 ORTHO05D000214 2.1e-08 62.0 60 55.0
Nitab4.5_0001221g0020 Nicotiana tabacum HOM05D000277 ORTHO05D000214 2.8e-08 61.6 60 53.3
PGSC0003DMG400029285 Solanum tuberosum HOM05D000277 ORTHO05D000214 2.8e-08 61.6 62 53.2
TWI09G0637 Tripterygium wilfordii HOM05D000277 ORTHO05D000214 2.8e-08 61.6 56 48.2
CSS0020139 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D000214 3.6e-08 61.2 59 55.9
CiPaw.01G015600 Carya illinoinensis HOM05D000277 ORTHO05D000214 3.6e-08 61.2 59 54.2
COL.COLO4_24564 Corchorus olitorius HOM05D000277 ORTHO05D000214 3.6e-08 61.2 70 47.1
Duzib147G0295 Durio zibethinus HOM05D000277 ORTHO05D000214 3.6e-08 61.2 54 51.9
Glyma.17G171300 Glycine max HOM05D000277 ORTHO05D000214 3.6e-08 61.2 54 53.7
COL.COLO4_34856 Corchorus olitorius HOM05D000277 ORTHO05D000214 4.7e-08 60.8 62 53.2
Gohir.A11G194900 Gossypium hirsutum HOM05D000277 ORTHO05D000214 4.7e-08 60.8 60 51.7
Lj2C839T4 Lonicera japonica HOM05D000277 ORTHO05D000214 4.7e-08 60.8 70 50.0
QL06p040823 Quercus lobata HOM05D000277 ORTHO05D000214 4.7e-08 60.8 60 55.0
QL07p002978 Quercus lobata HOM05D000277 ORTHO05D000214 4.7e-08 60.8 59 54.2
QL07p003006 Quercus lobata HOM05D000277 ORTHO05D000214 4.7e-08 60.8 59 52.5
Atru.chr3.295 Acer truncatum HOM05D000277 ORTHO05D000214 6.2e-08 60.5 60 55.0
Ciclev10011715m.g Citrus clementina HOM05D000277 ORTHO05D000214 6.2e-08 60.5 55 54.5
QL07p002970 Quercus lobata HOM05D000277 ORTHO05D000214 6.2e-08 60.5 59 55.9
TWI09G0435 Tripterygium wilfordii HOM05D000277 ORTHO05D000214 6.2e-08 60.5 56 48.2
CiPaw.02G007600 Carya illinoinensis HOM05D000277 ORTHO05D000214 8.1e-08 60.1 56 57.1
Psat0s61g0040 Pisum sativum HOM05D000277 ORTHO05D000214 8.1e-08 60.1 57 54.4
MSTRG.23015 Avicennia marina HOM05D000277 ORTHO05D000214 1.1e-07 59.7 54 53.7
Gohir.D11G200900 Gossypium hirsutum HOM05D000277 ORTHO05D000214 1.1e-07 59.7 70 42.9
Lj2A839G50 Lonicera japonica HOM05D000277 ORTHO05D000214 1.4e-07 59.3 73 52.1
Peaxi162Scf00045g01341 Petunia axillaris HOM05D000277 ORTHO05D000214 1.4e-07 59.3 60 48.3
Peaxi162Scf00271g00054 Petunia axillaris HOM05D000277 ORTHO05D000214 2.4e-07 58.5 66 50.0
TPR.G7203 Trifolium pratense HOM05D000277 ORTHO05D000214 2.4e-07 58.5 54 48.1
Psat3g141120 Pisum sativum HOM05D000277 ORTHO05D000214 3.1e-07 58.2 57 50.9
Thecc.07G088200 Theobroma cacao HOM05D000277 ORTHO05D000214 3.1e-07 58.2 59 50.8
Psat4g190800 Pisum sativum HOM05D000277 ORTHO05D000214 4.0e-07 57.8 57 52.6
QL07p013055 Quercus lobata HOM05D000277 ORTHO05D000214 4.0e-07 57.8 59 54.2
SalBow5G1703 Salvia bowleyana HOM05D000277 ORTHO05D000214 4.0e-07 57.8 54 50.0
Solyc08g005890.3 Solanum lycopersicum HOM05D000277 ORTHO05D000214 5.2e-07 57.4 59 49.2
PGSC0003DMG400004029 Solanum tuberosum HOM05D000277 ORTHO05D000214 5.2e-07 57.4 60 51.7
SGA_v2.0_scaffold56G20016 Striga asiatica HOM05D000277 ORTHO05D000214 5.2e-07 57.4 54 51.9
TAR381G0435 Trochodendron aralioides HOM05D000277 ORTHO05D000214 5.2e-07 57.4 61 49.2
Duzib268G0237 Durio zibethinus HOM05D000277 ORTHO05D000214 6.8e-07 57.0 50 54.0
MD04G1188300 Malus domestica HOM05D000277 ORTHO05D000214 6.8e-07 57.0 72 47.2
CARHR178610 Cardamine hirsuta HOM05D000277 ORTHO05D000214 8.9e-07 56.6 63 54.0
COL.COLO4_17854 Corchorus olitorius HOM05D000277 ORTHO05D000214 8.9e-07 56.6 63 49.2
PSO017G4768 Papaver somniferum HOM05D000277 ORTHO05D000214 8.9e-07 56.6 61 52.5
PSO782G2487 Papaver somniferum HOM05D000277 ORTHO05D000214 8.9e-07 56.6 61 52.5
PSO782G4332 Papaver somniferum HOM05D000277 ORTHO05D000214 8.9e-07 56.6 61 52.5
Peaxi162Scf00876g00116 Petunia axillaris HOM05D000277 ORTHO05D000214 8.9e-07 56.6 62 51.6
Actinidia16617 Actinidia chinensis HOM05D000277 ORTHO05D000214 1.2e-06 56.2 59 52.5
COL.COLO4_34865 Corchorus olitorius HOM05D000277 ORTHO05D000214 1.2e-06 56.2 42 61.9
Migut.I00255 Erythranthe guttata HOM05D000277 ORTHO05D000214 1.2e-06 56.2 54 53.7
PSO170G2556 Papaver somniferum HOM05D000277 ORTHO05D000214 1.2e-06 56.2 62 48.4
PGSC0003DMG400025842 Solanum tuberosum HOM05D000277 ORTHO05D000214 1.2e-06 56.2 59 49.2
Lj2C838T1 Lonicera japonica HOM05D000277 ORTHO05D000214 1.5e-06 55.8 73 49.3
Nn1g04512 Nelumbo nucifera HOM05D000277 ORTHO05D000214 1.5e-06 55.8 70 47.1
Nitab4.5_0001159g0030 Nicotiana tabacum HOM05D000277 ORTHO05D000214 1.5e-06 55.8 60 51.7
MD17G1197100 Malus domestica HOM05D000277 ORTHO05D000214 2.0e-06 55.5 72 47.2
Nitab4.5_0001327g0020 Nicotiana tabacum HOM05D000277 ORTHO05D000214 2.0e-06 55.5 70 47.1
PSO017G7261 Papaver somniferum HOM05D000277 ORTHO05D000214 2.0e-06 55.5 61 50.8
Prupe.7G129900 Prunus persica HOM05D000277 ORTHO05D000214 2.0e-06 55.5 61 50.8
CSS0022361 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D000214 2.6e-06 55.1 60 55.0
SalBow5G2255 Salvia bowleyana HOM05D000277 ORTHO05D000214 2.6e-06 55.1 59 47.5
PSO302G0211 Papaver somniferum HOM05D000277 ORTHO05D000214 4.4e-06 54.3 62 46.8
TAR381G0084 Trochodendron aralioides HOM05D000277 ORTHO05D000214 4.4e-06 54.3 57 52.6
PSO170G0702 Papaver somniferum HOM05D000277 ORTHO05D000214 5.8e-06 53.9 61 50.8
AL5G30400 Arabidopsis lyrata HOM05D000277 ORTHO05D000214 7.6e-06 53.5 61 49.2
SGA_v2.0_scaffold56G20014 Striga asiatica HOM05D000277 ORTHO05D000214 7.6e-06 53.5 61 50.8
Prupe.7G130100 Prunus persica HOM05D000277 ORTHO05D000214 9.9e-06 53.1 72 45.8


User provided reference genes

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