Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16472 Trifolium pratense HOM05D000223 ORTHO05D008670 1.6e-17 91.7 46 100.0
TPR.G20385 Trifolium pratense HOM05D000223 ORTHO05D008670 1.6e-17 91.7 46 100.0
SalBow6G2441 Salvia bowleyana HOM05D000088 ORTHO05D008670 8.1e-17 89.4 46 97.8
Migut.J01618 Erythranthe guttata HOM05D000223 ORTHO05D008670 1.8e-16 88.2 46 95.7
Medtr1g050520 Medicago truncatula HOM05D000223 ORTHO05D008670 1.8e-16 88.2 46 97.8
Psat6g095400 Pisum sativum HOM05D000223 ORTHO05D008670 1.8e-16 88.2 46 97.8
Solyc01g056690.4 Solanum lycopersicum HOM05D000223 ORTHO05D008670 2.3e-16 87.8 46 93.5
Sopen01g020840 Solanum pennellii HOM05D000223 ORTHO05D008670 2.3e-16 87.8 46 93.5
SGA_v2.0_scaffold69G23178 Striga asiatica HOM05D000223 ORTHO05D008670 2.3e-16 87.8 46 95.7
Potri.016G030800 Populus trichocarpa HOM05D000223 ORTHO05D008670 3.1e-16 87.4 46 95.7
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 3.1e-16 87.4 46 95.7
Zm00001eb342010 Zea mays HOM05D000494 ORTHO05D008670 3.1e-16 87.4 46 95.7
CANSAT35G0549 Cannabis sativa HOM05D000223 ORTHO05D008670 4.0e-16 87.0 46 93.5
Eucgr.K01673 Eucalyptus grandis HOM05D000223 ORTHO05D008670 4.0e-16 87.0 46 93.5
Eucgr.L02445 Eucalyptus grandis HOM05D000223 ORTHO05D008670 4.0e-16 87.0 46 93.5
Actinidia17970 Actinidia chinensis HOM05D000494 ORTHO05D008670 6.8e-16 86.3 46 95.7
ATR0724G099 Amborella trichopoda HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 93.5
Cc06_g20510 Coffea canephora HOM05D000494 ORTHO05D008670 6.8e-16 86.3 46 89.1
Glyma.02G162300 Glycine max HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 95.7
MBI10_g42733_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D008670 6.8e-16 86.3 46 93.5
Manes.08G063732 Manihot esculenta HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 93.5
Nn7g36998 Nelumbo nucifera HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 93.5
PSO384G3882 Papaver somniferum HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 93.5
Peaxi162Scf00470g00048 Petunia axillaris HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 93.5
PGR142G0562 Punica granatum HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 93.5
TAR633G1042 Trochodendron aralioides HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 93.5
VMungo0720G1770 Vigna mungo HOM05D000223 ORTHO05D008670 6.8e-16 86.3 46 95.7
Atru.chr1.1351 Acer truncatum HOM05D000223 ORTHO05D008670 8.9e-16 85.9 46 91.3
Ciclev10011248m.g Citrus clementina HOM05D000223 ORTHO05D008670 8.9e-16 85.9 46 93.5
GSVIVG01025802001 Vitis vinifera HOM05D000223 ORTHO05D008670 8.9e-16 85.9 46 91.3
CSS0040284 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D008670 1.2e-15 85.5 46 93.5
Dinv30090 Davidia involucrata HOM05D000223 ORTHO05D008670 1.2e-15 85.5 46 91.3
ECA247G3244 Erigeron canadensis HOM05D000223 ORTHO05D008670 1.2e-15 85.5 46 93.5
RhsimUnG0018900 Rhododendron simsii HOM05D000494 ORTHO05D008670 1.2e-15 85.5 46 91.3
RhsimUnG0209300 Rhododendron simsii HOM05D000494 ORTHO05D008670 1.2e-15 85.5 46 91.3
Cfa019954 Carpinus fangiana HOM05D000223 ORTHO05D008670 1.5e-15 85.1 46 91.3
CiPaw.10G043700 Carya illinoinensis HOM05D000223 ORTHO05D008670 1.5e-15 85.1 46 91.3
Haze_20279 Corylus avellana HOM05D000494 ORTHO05D008670 1.5e-15 85.1 46 91.3
Haze_20284 Corylus avellana HOM05D000494 ORTHO05D008670 1.5e-15 85.1 46 91.3
Os01g0541900 Oryza sativa ssp. japonica HOM05D000223 ORTHO05D008670 1.5e-15 85.1 46 93.5
TWI53G0492 Tripterygium wilfordii HOM05D000223 ORTHO05D008670 1.5e-15 85.1 46 93.5
Aqoxy1G00057 Aquilegia oxysepala HOM05D000223 ORTHO05D008670 2.0e-15 84.7 46 91.3
MD12G1099600 Malus domestica HOM05D000223 ORTHO05D008670 2.0e-15 84.7 46 91.3
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 2.0e-15 84.7 45 91.1
Sabra16G0034100 Salix brachista HOM05D000494 ORTHO05D008670 2.6e-15 84.3 46 93.5
arahy.Tifrunner.gnm1.ann1.5JYC56 Arachis hypogaea HOM05D000223 ORTHO05D008670 3.4e-15 84.0 46 91.3
arahy.Tifrunner.gnm1.ann1.DZ1TRF Arachis hypogaea HOM05D000223 ORTHO05D008670 3.4e-15 84.0 46 91.3
Cpa.g.sc37.35 Carica papaya HOM05D000223 ORTHO05D008670 3.4e-15 84.0 46 91.3
Phvul.007G244300 Phaseolus vulgaris HOM05D000223 ORTHO05D008670 3.4e-15 84.0 46 93.5
Ca_05362_v3 Cicer arietinum L. HOM05D000223 ORTHO05D008670 4.4e-15 83.6 46 91.3
COL.COLO4_19401 Corchorus olitorius HOM05D000223 ORTHO05D008670 4.4e-15 83.6 46 89.1
FAN15G2663 Fragaria x ananassa HOM05D000223 ORTHO05D008670 4.4e-15 83.6 46 93.5
Gohir.A13G001700 Gossypium hirsutum HOM05D000223 ORTHO05D008670 4.4e-15 83.6 46 89.1
Gorai.013G001000 Gossypium raimondii HOM05D000223 ORTHO05D008670 4.4e-15 83.6 46 89.1
RcHm_v2.0_Chr6g0284731 Rosa chinensis HOM05D000223 ORTHO05D008670 4.4e-15 83.6 46 93.5
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 5.8e-15 83.2 46 89.1
CAN.G197.1 Capsicum annuum HOM05D000223 ORTHO05D008670 7.5e-15 82.8 46 89.1
PGSC0003DMG400016274 Solanum tuberosum HOM05D000494 ORTHO05D008670 7.5e-15 82.8 46 89.1
CDE02G3287 Ceratophyllum demersum HOM05D000223 ORTHO05D008670 9.9e-15 82.4 46 89.1
HanXRQChr10g0298501 Helianthus annuus HOM05D000223 ORTHO05D008670 9.9e-15 82.4 46 91.3
Lj1C1082G8 Lonicera japonica HOM05D000223 ORTHO05D008670 9.9e-15 82.4 46 91.3
Thecc.05G122400 Theobroma cacao HOM05D000223 ORTHO05D008670 9.9e-15 82.4 46 87.0
AUR62018399 Chenopodium quinoa HOM05D000223 ORTHO05D008670 1.7e-14 81.6 46 89.1
Duzib128G1945 Durio zibethinus HOM05D000223 ORTHO05D008670 1.7e-14 81.6 46 87.0
Lj5g0002002 Lotus japonicus HOM05D000223 ORTHO05D008670 1.7e-14 81.6 46 91.3
Hund19071 Selenicereus undatus HOM05D000223 ORTHO05D008670 1.7e-14 81.6 46 87.0
CARHR135980 Cardamine hirsuta HOM05D000223 ORTHO05D008670 2.2e-14 81.3 46 89.1
THA.LOC104814580 Tarenaya hassleriana HOM05D000223 ORTHO05D008670 2.9e-14 80.9 46 89.1
EL10Ac3g07290 Beta vulgaris HOM05D000223 ORTHO05D008670 3.7e-14 80.5 46 84.8
AUR62021044 Chenopodium quinoa HOM05D000223 ORTHO05D008670 3.7e-14 80.5 46 87.0
FvH4_2g18940 Fragaria vesca HOM05D000223 ORTHO05D008670 3.7e-14 80.5 46 91.3
FAN24G3139 Fragaria x ananassa HOM05D000223 ORTHO05D008670 3.7e-14 80.5 46 91.3
Gohir.D13G000200 Gossypium hirsutum HOM05D000223 ORTHO05D008670 3.7e-14 80.5 46 87.0
Sp4g23190 Schrenkiella parvula HOM05D000223 ORTHO05D008670 6.4e-14 79.7 46 87.0
AL4G38810 Arabidopsis lyrata HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 87.0
AT2G40860 Arabidopsis thaliana HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 87.0
BcaC01g05371 Brassica carinata HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 87.0
BcaNung05542 Brassica carinata HOM05D000088 ORTHO05D008670 1.1e-13 79.0 46 87.0
A03p23000 Brassica napus HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 87.0
C03p27270 Brassica napus HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 87.0
BolC3t15109H Brassica oleracea HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 87.0
BraA03t11523Z Brassica rapa HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 87.0
Carub.0004s2318 Capsella rubella HOM05D000223 ORTHO05D008670 1.1e-13 79.0 46 84.8
Aa31LG3G1240 Aethionema arabicum HOM05D000223 ORTHO05D008670 1.4e-13 78.6 46 84.8
MELO3C009743.2 Cucumis melo HOM05D000223 ORTHO05D008670 2.4e-13 77.8 46 82.6
CsaV3_3G040010 Cucumis sativus L. HOM05D000223 ORTHO05D008670 2.4e-13 77.8 46 82.6
Thhalv10016363m.g Eutrema salsugineum HOM05D000223 ORTHO05D008670 3.2e-13 77.4 46 87.0
Lsat_1_v5_gn_9_32241 Lactuca sativa HOM05D000223 ORTHO05D008670 3.2e-13 77.4 46 84.8
ClCG10G016330 Citrullus lanatus HOM05D000223 ORTHO05D008670 4.1e-13 77.0 46 80.4
Lalb_Chr21g0316801 Lupinus albus HOM05D000223 ORTHO05D008670 4.1e-13 77.0 46 87.0
Oeu044235.1 Olea europaea HOM05D000223 ORTHO05D008670 4.1e-13 77.0 46 87.0
Sed0010522 Sechium edule HOM05D000223 ORTHO05D008670 4.1e-13 77.0 46 82.6
Hma1.2p1_0031F.1_g018410 Hydrangea macrophylla HOM05D000223 ORTHO05D008670 7.1e-13 76.3 46 87.0
Hma1.2p1_0031F.1_g018450 Hydrangea macrophylla HOM05D000223 ORTHO05D008670 7.1e-13 76.3 46 87.0
HPP92_021586 Vanilla planifolia HOM05D000394 ORTHO05D000299 7.1e-13 76.3 46 82.6
Pp3c4_23550 Physcomitrium patens HOM05D000223 ORTHO05D008670 9.2e-13 75.9 46 82.6
Sc25g0005540 Simmondsia chinensis HOM05D000223 ORTHO05D008670 9.2e-13 75.9 46 80.4
AagrBONN_evm.TU.Sc2ySwM_368.1033 Anthoceros agrestis HOM05D000223 ORTHO05D008670 3.5e-12 73.9 46 80.4
SMO115G0162 Selaginella moellendorffii HOM05D000223 ORTHO05D008670 3.5e-12 73.9 46 78.3
HPP92_021562 Vanilla planifolia HOM05D000223 ORTHO05D008670 1.0e-11 72.4 46 78.3
QL08p013855 Quercus lobata HOM05D000223 ORTHO05D008670 5.1e-11 70.1 42 78.6
PRCOL_00003233 Prasinoderma coloniale HOM05D000494 ORTHO05D008670 1.6e-09 65.1 45 64.4
Ah.04g150620 Amaranthus hybridus HOM05D000223 ORTHO05D008670 5.8e-07 56.6 32 84.4
MCO08G027 Micromonas commoda HOM05D000494 ORTHO05D008670 5.8e-07 56.6 44 61.4


User provided reference genes

Program Settings