Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 3.4e-61 238.0 110 100.0
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 1.7e-60 235.7 110 99.1
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 8.3e-60 233.4 110 99.1
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.7e-33 146.0 100 74.0
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.7e-33 146.0 86 81.4
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.7e-33 146.0 86 81.4
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 3.0e-33 145.2 86 80.2
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 3.9e-33 144.8 89 76.4
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 3.9e-33 144.8 89 76.4
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 5.0e-33 144.4 89 76.4
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 6.6e-33 144.1 86 80.2
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 6.6e-33 144.1 86 80.2
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 6.6e-33 144.1 86 80.2
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 8.6e-33 143.7 86 79.1
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 1.1e-32 143.3 86 79.1
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.5e-32 142.9 93 71.0
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 1.5e-32 142.9 86 79.1
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 1.5e-32 142.9 86 80.2
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 1.9e-32 142.5 86 77.9
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 2.5e-32 142.1 86 79.1
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 2.5e-32 142.1 86 79.1
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 2.5e-32 142.1 86 79.1
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 5.6e-32 141.0 88 75.0
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.6e-31 139.4 86 76.7
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 1.6e-31 139.4 86 77.9
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.1e-31 139.0 86 76.7
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.1e-31 139.0 86 76.7
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.1e-31 139.0 86 79.1
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.8e-31 138.7 86 77.9
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 2.8e-31 138.7 86 77.9
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 2.8e-31 138.7 86 77.9
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 4.7e-31 137.9 86 76.7
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 4.7e-31 137.9 86 76.7
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 6.2e-31 137.5 86 75.6
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 6.2e-31 137.5 86 76.7
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 1.4e-30 136.3 86 75.6
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.8e-30 136.0 89 73.0
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.8e-30 136.0 86 75.6
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-30 136.0 86 74.4
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 2.3e-30 135.6 92 70.7
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 3.1e-30 135.2 86 75.6
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 3.1e-30 135.2 86 75.6
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 1.5e-29 132.9 74 85.1
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 4.4e-29 131.3 89 70.8
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 7.5e-29 130.6 79 78.5
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-28 129.8 87 70.1
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-28 129.8 88 71.6
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 3.7e-28 128.3 108 61.1
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 8.3e-28 127.1 64 93.8
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 3.2e-27 125.2 64 92.2
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 3.2e-27 125.2 64 92.2
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 3.2e-27 125.2 64 90.6
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-27 124.4 86 68.6
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-27 124.4 92 63.0
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 5.4e-27 124.4 86 69.8
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 7.1e-27 124.0 64 90.6
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.6e-26 122.9 64 90.6
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 2.1e-26 122.5 64 90.6
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.1e-26 122.5 64 90.6
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 3.5e-26 121.7 64 89.1
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 4.6e-26 121.3 64 87.5
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 2.3e-25 119.0 64 87.5
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 5.1e-25 117.9 64 87.5
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 5.1e-25 117.9 64 87.5
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-25 117.9 67 82.1
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.1e-25 117.9 64 85.9
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 6.6e-25 117.5 74 73.0
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.6e-25 117.1 75 73.3
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.1e-24 116.7 64 87.5
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.1e-24 116.7 64 87.5
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 1.1e-24 116.7 64 87.5
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 3.3e-24 115.2 64 85.9
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 4.3e-24 114.8 64 85.9
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-24 114.0 67 80.6
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 9.5e-24 113.6 59 89.8
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-23 111.3 64 81.2
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 6.2e-23 110.9 64 82.8
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.8e-22 109.4 64 82.8
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-22 109.0 61 83.6
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 2.4e-22 109.0 69 73.9
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 6.8e-22 107.5 64 78.1
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 8.9e-22 107.1 110 52.7
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 3.4e-21 105.1 68 70.6
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.4e-21 105.1 66 72.7
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-21 104.0 64 75.0
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 2.9e-20 102.1 64 76.6
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 1.9e-19 99.4 43 100.0
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-19 99.0 77 67.5
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 4.6e-18 94.7 76 63.2
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 6.6e-17 90.9 49 87.8
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-16 89.7 55 76.4
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 7.3e-16 87.4 60 66.7
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-14 82.4 51 74.5
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.2e-14 81.3 59 62.7
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 1.2e-13 80.1 39 87.2
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 9.9e-13 77.0 38 94.7
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 1.9e-11 72.8 41 85.4
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.9e-11 72.8 36 94.4
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.9e-11 72.8 36 94.4
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.4e-11 71.2 43 76.7
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-10 68.6 44 77.3
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-10 68.6 44 77.3
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 4.6e-10 68.2 51 64.7
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 4.6e-10 68.2 86 46.5
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-09 65.9 33 93.9
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-09 65.9 33 93.9
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-09 64.7 43 74.4
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 6.6e-09 64.3 33 90.9
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 8.7e-09 63.9 33 87.9
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 1.9e-08 62.8 33 90.9
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 33 90.9
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-08 62.8 33 90.9
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.3e-07 60.1 30 90.0
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-07 58.9 33 84.8
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 3.6e-07 58.5 87 44.8
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 3.6e-07 58.5 87 44.8
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-07 58.2 33 84.8
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 8.1e-07 57.4 45 57.8


User provided reference genes

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