Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20335 Trifolium pratense HOM05D002352 ORTHO05D016619 3.0e-34 147.9 73 100.0
TPR.G18540 Trifolium pratense HOM05D002352 ORTHO05D016619 1.4e-31 139.0 69 97.1
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 4.9e-24 114.0 71 85.9
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.2e-22 109.4 71 83.1
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.6e-22 109.0 71 83.1
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.5e-22 107.8 71 81.7
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.3e-21 105.9 71 78.9
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.3e-21 105.1 71 78.9
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 5.0e-21 104.0 71 80.3
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 5.0e-21 104.0 71 78.9
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 5.0e-21 104.0 71 77.5
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 8.6e-21 103.2 71 77.5
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.5e-20 101.7 70 77.1
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 4.2e-20 100.9 71 76.1
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 7.2e-20 100.1 71 74.6
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 7.2e-20 100.1 71 74.6
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 9.5e-20 99.8 71 74.6
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 9.5e-20 99.8 71 74.6
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.6e-19 99.0 69 75.4
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.6e-19 99.0 69 75.4
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 2.1e-19 98.6 70 75.7
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.1e-19 98.6 69 75.4
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.1e-19 98.6 69 75.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.1e-19 98.6 69 73.9
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.1e-19 98.6 69 73.9
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 3.6e-19 97.8 68 77.9
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 3.6e-19 97.8 68 77.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.6e-19 97.8 71 73.2
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 3.6e-19 97.8 71 74.6
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 3.6e-19 97.8 70 75.7
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 6.1e-19 97.1 71 70.4
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.0e-19 96.7 69 73.9
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.0e-18 96.3 70 74.3
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.4e-18 95.9 70 72.9
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 1.4e-18 95.9 71 70.4
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.8e-18 95.5 69 71.0
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 2.3e-18 95.1 71 71.8
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.3e-18 95.1 71 69.0
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.3e-18 95.1 69 72.5
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.3e-18 95.1 70 72.9
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.0e-18 94.7 71 70.4
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.0e-18 94.7 68 75.0
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.0e-18 94.7 69 71.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.0e-18 94.7 69 71.0
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 3.0e-18 94.7 70 71.4
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 4.0e-18 94.4 70 71.4
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 4.0e-18 94.4 71 70.4
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 4.0e-18 94.4 69 73.9
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 6.8e-18 93.6 71 71.8
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 6.8e-18 93.6 69 72.5
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 8.9e-18 93.2 67 71.6
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 8.9e-18 93.2 68 73.5
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 8.9e-18 93.2 68 73.5
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.2e-17 92.8 69 71.0
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.2e-17 92.8 70 70.0
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 1.5e-17 92.4 71 70.4
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.5e-17 92.4 71 70.4
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.5e-17 92.4 71 70.4
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.5e-17 92.4 70 71.4
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.5e-17 92.4 70 71.4
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.5e-17 92.4 70 71.4
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.5e-17 92.4 68 72.1
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.0e-17 92.0 71 67.6
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 2.0e-17 92.0 70 70.0
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.6e-17 91.7 70 68.6
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.4e-17 91.3 69 71.0
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 3.4e-17 91.3 69 71.0
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.4e-17 91.3 68 67.6
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 3.4e-17 91.3 70 70.0
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.4e-17 90.9 70 71.4
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 4.4e-17 90.9 69 71.0
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 4.4e-17 90.9 68 70.6
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 5.7e-17 90.5 69 68.1
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.7e-17 90.5 70 70.0
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.7e-17 90.5 70 70.0
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 5.7e-17 90.5 70 70.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 7.5e-17 90.1 68 70.6
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 7.5e-17 90.1 68 70.6
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 7.5e-17 90.1 71 69.0
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 7.5e-17 90.1 71 69.0
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 7.5e-17 90.1 71 69.0
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 7.5e-17 90.1 71 69.0
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 7.5e-17 90.1 68 69.1
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 7.5e-17 90.1 70 68.6
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 7.5e-17 90.1 70 70.0
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 7.5e-17 90.1 68 70.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 9.8e-17 89.7 68 67.6
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 9.8e-17 89.7 68 70.6
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 9.8e-17 89.7 68 70.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 9.8e-17 89.7 68 70.6
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 9.8e-17 89.7 68 70.6
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 9.8e-17 89.7 71 67.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 9.8e-17 89.7 68 70.6
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 9.8e-17 89.7 68 70.6
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.3e-16 89.4 69 65.2
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.3e-16 89.4 70 67.1
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.3e-16 89.4 68 70.6
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.7e-16 89.0 70 68.6
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 1.7e-16 89.0 70 68.6
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.7e-16 89.0 70 68.6
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 1.7e-16 89.0 67 70.1
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.7e-16 89.0 70 68.6
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.2e-16 88.6 70 68.6
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 2.8e-16 88.2 68 69.1
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.8e-16 88.2 70 67.1
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.7e-16 87.8 69 68.1
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.9e-16 87.4 69 68.1
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 8.3e-16 86.7 68 69.1
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 8.3e-16 86.7 67 70.1
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.8e-15 85.5 68 67.6
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.8e-15 85.5 68 69.1
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 2.4e-15 85.1 67 68.7
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 2.4e-15 85.1 68 63.2
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.4e-15 85.1 68 67.6
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.2e-15 84.7 68 67.6
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.2e-15 84.7 68 67.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.2e-15 84.7 68 67.6
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 5.4e-15 84.0 69 65.2
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 9.2e-15 83.2 68 69.1
Zm00001eb214370 Zea mays HOM05D002352 ORTHO05D016619 1.6e-14 82.4 66 65.2
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.7e-14 81.6 69 62.3
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 4.6e-14 80.9 70 64.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 5.9e-14 80.5 68 61.8
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.9e-14 80.5 70 65.7
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 7.8e-14 80.1 68 64.7
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.9e-13 78.2 70 65.7
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 3.9e-13 77.8 69 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 5.0e-13 77.4 68 58.8
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 6.6e-13 77.0 68 63.2
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.9e-12 75.5 68 61.8
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 2.5e-12 75.1 66 60.6
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.3e-12 74.7 69 58.0
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 9.5e-12 73.2 69 56.5
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 1.2e-11 72.8 71 54.9
TPR.G28589 Trifolium pratense HOM05D002352 ORTHO05D016619 6.1e-11 70.5 37 91.9
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.0e-10 69.7 74 51.4
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 5.2e-10 67.4 68 54.4
Zm00001eb149590 Zea mays HOM05D002352 ORTHO05D016619 5.2e-10 67.4 52 67.3
TPR.G40013 Trifolium pratense HOM05D002352 ORTHO05D014906 6.8e-10 67.0 41 82.9
TAR636G1029 Trochodendron aralioides HOM05D002352 ORTHO05D002410 6.8e-10 67.0 54 68.5
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.2e-08 62.0 42 73.8


User provided reference genes

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