Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20324 Trifolium pratense HOM05D001486 ORTHO05D031489 4.9e-64 247.7 127 100.0
Medtr1g032110 Medicago truncatula HOM05D001486 ORTHO05D003845 5.8e-49 197.6 142 77.5
Ca_12547_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 8.1e-43 177.2 132 75.0
Psat6g046320 Pisum sativum HOM05D001486 ORTHO05D003845 6.4e-40 167.5 115 77.4
Lj2g0001507 Lotus japonicus HOM05D001486 ORTHO05D003845 4.3e-36 154.8 131 67.9
Glyma.02G085000 Glycine max HOM05D001486 ORTHO05D003845 1.8e-34 149.4 133 66.2
Phvul.003G019400 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 4.5e-33 144.8 132 65.9
Lalb_Chr04g0258641 Lupinus albus HOM05D001486 ORTHO05D003845 6.4e-32 141.0 133 63.2
Lalb_Chr10g0095731 Lupinus albus HOM05D001486 ORTHO05D003845 5.5e-31 137.9 132 61.4
arahy.Tifrunner.gnm1.ann1.56F275 Arachis hypogaea HOM05D001486 ORTHO05D003845 1.2e-30 136.7 124 62.9
arahy.Tifrunner.gnm1.ann1.JC79MH Arachis hypogaea HOM05D001486 ORTHO05D003845 1.2e-30 136.7 124 62.9
Lj4g0000437 Lotus japonicus HOM05D001486 ORTHO05D003845 1.6e-30 136.3 122 63.9
VMungo1215G0637 Vigna mungo HOM05D001486 ORTHO05D003845 6.7e-29 131.0 133 60.9
QL03p035767 Quercus lobata HOM05D001486 ORTHO05D003845 3.1e-26 122.1 131 55.7
Ciclev10014409m.g Citrus clementina HOM05D001486 ORTHO05D003845 4.0e-26 121.7 134 54.5
Cfa015023 Carpinus fangiana HOM05D001486 ORTHO05D003845 1.5e-25 119.8 135 53.3
Lalb_Chr16g0387531 Lupinus albus HOM05D001486 ORTHO05D003845 2.0e-25 119.4 117 59.8
arahy.Tifrunner.gnm1.ann1.G5DQ32 Arachis hypogaea HOM05D001486 ORTHO05D031489 3.4e-25 118.6 122 55.7
Hma1.2p1_0705F.1_g206960 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 4.5e-25 118.2 135 57.0
CiPaw.06G051700 Carya illinoinensis HOM05D001486 ORTHO05D003845 5.8e-25 117.9 126 55.6
VMungo0251G2427 Vigna mungo HOM05D001486 ORTHO05D003845 1.7e-24 116.3 127 55.9
Phvul.002G321100 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 4.9e-24 114.8 127 55.1
Manes.17G083800 Manihot esculenta HOM05D001486 ORTHO05D003845 7.1e-23 110.9 137 52.6
Glyma.05G238700 Glycine max HOM05D001486 ORTHO05D003845 2.7e-22 109.0 117 54.7
Dinv07731 Davidia involucrata HOM05D001486 ORTHO05D003845 4.6e-22 108.2 135 51.9
Lalb_Chr09g0330901 Lupinus albus HOM05D001486 ORTHO05D003845 6.0e-22 107.8 105 60.0
MD16G1018900 Malus domestica HOM05D001486 ORTHO05D003845 6.0e-22 107.8 136 52.2
Haze_10882 Corylus avellana HOM05D001486 ORTHO05D003845 7.9e-22 107.5 128 50.0
Dinv10476 Davidia involucrata HOM05D001486 ORTHO05D003845 7.9e-22 107.5 134 53.0
Medtr8g105270 Medicago truncatula HOM05D001486 ORTHO05D003845 1.0e-21 107.1 131 48.9
RcHm_v2.0_Chr4g0443071 Rosa chinensis HOM05D001486 ORTHO05D003845 1.0e-21 107.1 134 52.2
CSS0045072 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 1.3e-21 106.7 134 50.7
Cc11_g07260 Coffea canephora HOM05D001486 ORTHO05D003845 1.8e-21 106.3 134 50.7
Duzib248G0925 Durio zibethinus HOM05D001486 ORTHO05D003845 1.8e-21 106.3 130 53.1
ECA233G3229 Erigeron canadensis HOM05D001486 ORTHO05D003845 1.8e-21 106.3 127 52.8
Psat7g008000 Pisum sativum HOM05D001486 ORTHO05D003845 1.8e-21 106.3 127 50.4
vmacro10692 Vaccinium macrocarpon HOM05D001486 ORTHO05D003845 1.8e-21 106.3 134 52.2
FvH4_4g33570 Fragaria vesca HOM05D001486 ORTHO05D003845 2.3e-21 105.9 136 50.0
FAN17G1742 Fragaria x ananassa HOM05D001486 ORTHO05D003845 2.3e-21 105.9 136 50.0
Gohir.A01G147000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.3e-21 105.9 124 51.6
Eucgr.G02107 Eucalyptus grandis HOM05D001486 ORTHO05D003845 3.0e-21 105.5 138 52.9
MD13G1020500 Malus domestica HOM05D001486 ORTHO05D003845 3.0e-21 105.5 137 50.4
Prupe.1G333200 Prunus persica HOM05D001486 ORTHO05D003845 3.9e-21 105.1 134 50.7
PGR142G0042 Punica granatum HOM05D001486 ORTHO05D003845 5.1e-21 104.8 135 50.4
ECA246G3923 Erigeron canadensis HOM05D001486 ORTHO05D003845 8.7e-21 104.0 136 50.0
Thecc.02G292300 Theobroma cacao HOM05D001486 ORTHO05D003845 1.1e-20 103.6 131 50.4
GSVIVG01011664001 Vitis vinifera HOM05D001486 ORTHO05D003845 1.1e-20 103.6 137 50.4
FAN12G1020 Fragaria x ananassa HOM05D001486 ORTHO05D003845 1.5e-20 103.2 136 49.3
Atru.chr11.926 Acer truncatum HOM05D001486 ORTHO05D003845 1.9e-20 102.8 135 48.9
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.9e-20 102.8 134 50.0
DCAR_030270 Daucus carota HOM05D001486 ORTHO05D003845 2.5e-20 102.4 133 48.9
Migut.E00480 Erythranthe guttata HOM05D001486 ORTHO05D003845 2.5e-20 102.4 134 50.0
TAR629G1492 Trochodendron aralioides HOM05D001486 ORTHO05D003845 2.5e-20 102.4 133 49.6
Sabra10G0077900 Salix brachista HOM05D001486 ORTHO05D003845 4.3e-20 101.7 136 47.8
Nn3g18359 Nelumbo nucifera HOM05D001486 ORTHO05D003845 9.7e-20 100.5 125 52.0
Potri.008G134600 Populus trichocarpa HOM05D001486 ORTHO05D003845 1.6e-19 99.8 136 48.5
Gohir.D01G140100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.2e-19 99.4 124 50.0
Nitab4.5_0005571g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 2.2e-19 99.4 122 54.1
Nn4g24361 Nelumbo nucifera HOM05D001486 ORTHO05D003845 3.7e-19 98.6 134 47.8
Potri.010G106700 Populus trichocarpa HOM05D001486 ORTHO05D003845 3.7e-19 98.6 136 47.1
CsaV3_5G036990 Cucumis sativus L. HOM05D001486 ORTHO05D003845 6.3e-19 97.8 150 44.7
MBI19_g37990_MAGBIO Magnolia biondii HOM05D001486 ORTHO05D003845 1.1e-18 97.1 131 48.1
COL.COLO4_16586 Corchorus olitorius HOM05D001486 ORTHO05D003845 1.8e-18 96.3 98 55.1
MELO3C026439.2 Cucumis melo HOM05D001486 ORTHO05D003845 1.8e-18 96.3 146 42.5
CAN.G406.6 Capsicum annuum HOM05D001486 ORTHO05D003845 3.1e-18 95.5 133 50.4
Gorai.002G172300 Gossypium raimondii HOM05D001486 ORTHO05D003845 1.5e-17 93.2 106 50.0
Peaxi162Scf00376g00836 Petunia axillaris HOM05D001486 ORTHO05D003845 2.0e-17 92.8 127 46.5
THA.LOC104805083 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 2.6e-17 92.4 134 47.8
Nitab4.5_0005073g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 3.4e-17 92.0 131 48.1
Oeu059515.2 Olea europaea HOM05D001486 ORTHO05D003845 3.4e-17 92.0 133 47.4
Sopen05g014620 Solanum pennellii HOM05D001486 ORTHO05D003845 4.5e-17 91.7 133 48.1
Sed0013183 Sechium edule HOM05D001486 ORTHO05D003845 5.9e-17 91.3 137 42.3
Duzib251G0612 Durio zibethinus HOM05D001486 ORTHO05D003845 1.7e-16 89.7 96 55.2
Gorai.008G168200 Gossypium raimondii HOM05D001486 ORTHO05D003845 2.9e-16 89.0 132 47.0
HanXRQChr15g0476741 Helianthus annuus HOM05D001486 ORTHO05D003845 2.9e-16 89.0 129 49.6
CANSAT01G1659 Cannabis sativa HOM05D001486 ORTHO05D003845 3.8e-16 88.6 141 43.3
Gohir.A12G152100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 5.0e-16 88.2 132 45.5
Lj3C864T11 Lonicera japonica HOM05D001486 ORTHO05D003845 5.0e-16 88.2 97 52.6
Solyc05g017860.3 Solanum lycopersicum HOM05D001486 ORTHO05D003845 5.0e-16 88.2 134 47.0
MSTRG.2129 Avicennia marina HOM05D001486 ORTHO05D003845 6.5e-16 87.8 126 47.6
Ah.03g137420 Amaranthus hybridus HOM05D001486 ORTHO05D003845 8.5e-16 87.4 135 48.1
SGA_v2.0_scaffold151G36774 Striga asiatica HOM05D001486 ORTHO05D003845 8.5e-16 87.4 96 55.2
Aqoxy3G00010 Aquilegia oxysepala HOM05D001486 ORTHO05D003845 1.4e-15 86.7 111 47.7
AUR62014245 Chenopodium quinoa HOM05D001486 ORTHO05D003845 1.4e-15 86.7 134 45.5
TWI74G0058 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 1.9e-15 86.3 135 44.4
Gorai.009G330200 Gossypium raimondii HOM05D001486 ORTHO05D003845 2.5e-15 85.9 102 50.0
ClCG07G005650 Citrullus lanatus HOM05D001486 ORTHO05D003845 5.5e-15 84.7 155 38.7
HanXRQChr08g0212491 Helianthus annuus HOM05D001486 ORTHO05D003845 5.5e-15 84.7 130 47.7
PSO063G0325 Papaver somniferum HOM05D001486 ORTHO05D003845 5.5e-15 84.7 119 47.1
PSO782G0639 Papaver somniferum HOM05D001486 ORTHO05D003845 5.5e-15 84.7 119 47.1
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 7.2e-15 84.3 134 45.5
AUR62038470 Chenopodium quinoa HOM05D001486 ORTHO05D003845 9.4e-15 84.0 132 43.2
Oeu031609.1 Olea europaea HOM05D001486 ORTHO05D003845 9.4e-15 84.0 127 43.3
Ca_17256_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 1.2e-14 83.6 99 50.5
Ca_17278_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 1.2e-14 83.6 99 50.5
ATR0753G082 Amborella trichopoda HOM05D001486 ORTHO05D003845 1.6e-14 83.2 132 41.7
Gohir.D05G309600 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.1e-14 82.8 102 49.0
Gorai.012G182400 Gossypium raimondii HOM05D001486 ORTHO05D003845 2.1e-14 82.8 117 45.3
SalBow2G3384 Salvia bowleyana HOM05D001486 ORTHO05D003845 2.1e-14 82.8 134 42.5
TWI53G1320 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 2.1e-14 82.8 135 42.2
DCAR_007328 Daucus carota HOM05D001486 ORTHO05D003845 2.7e-14 82.4 110 45.5
Gohir.A05G308900 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.7e-14 82.4 102 48.0
FAN22G2360 Fragaria x ananassa HOM05D001486 ORTHO05D003845 4.6e-14 81.6 98 49.0
Gohir.D04G186000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 7.9e-14 80.9 117 44.4
Os03g0223700 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D003845 1.0e-13 80.5 120 45.0
Solyc04g008010.4 Solanum lycopersicum HOM05D001486 ORTHO05D003845 1.8e-13 79.7 102 47.1
Sopen04g003150 Solanum pennellii HOM05D001486 ORTHO05D003845 1.8e-13 79.7 102 47.1
PGSC0003DMG401029470 Solanum tuberosum HOM05D001486 ORTHO05D003845 1.8e-13 79.7 102 47.1
CAN.G3126.1 Capsicum annuum HOM05D001486 ORTHO05D003845 3.0e-13 79.0 101 46.5
CAN.G74.5 Capsicum annuum HOM05D001486 ORTHO05D003845 3.0e-13 79.0 101 46.5
HanXRQChr17g0567281 Helianthus annuus HOM05D001486 ORTHO05D003845 3.9e-13 78.6 128 46.1
TAR371G0986 Trochodendron aralioides HOM05D001486 ORTHO05D003845 5.1e-13 78.2 101 47.5
Lsat_1_v5_gn_3_53381 Lactuca sativa HOM05D001486 ORTHO05D003845 8.8e-13 77.4 132 47.7
EL10Ac6g14120 Beta vulgaris HOM05D001486 ORTHO05D003845 1.1e-12 77.0 127 42.5
BcaC06g31283 Brassica carinata HOM05D001486 ORTHO05D003845 1.1e-12 77.0 137 41.6
THA.LOC104824128 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 1.9e-12 76.3 98 46.9
Aa31LG2G8200 Aethionema arabicum HOM05D001486 ORTHO05D003845 2.5e-12 75.9 91 49.5
Gohir.A04G142700 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.5e-12 75.9 118 44.1
Nitab4.5_0002803g0060 Nicotiana tabacum HOM05D001486 ORTHO05D003845 2.5e-12 75.9 96 47.9
Hund24926 Selenicereus undatus HOM05D001486 ORTHO05D003845 5.7e-12 74.7 130 45.4
Nitab4.5_0002414g0110 Nicotiana tabacum HOM05D001486 ORTHO05D003845 7.4e-12 74.3 101 46.5
Peaxi162Scf00337g00815 Petunia axillaris HOM05D001486 ORTHO05D003845 9.7e-12 73.9 80 48.8
Hund20674 Selenicereus undatus HOM05D001486 ORTHO05D003845 9.7e-12 73.9 119 42.0
MSTRG.7612 Avicennia marina HOM05D001486 ORTHO05D003845 1.3e-11 73.6 86 47.7
Zm00001eb399850 Zea mays HOM05D001486 ORTHO05D003845 1.3e-11 73.6 117 46.2
Actinidia38441 Actinidia chinensis HOM05D001486 ORTHO05D003845 1.7e-11 73.2 81 53.1
Manes.15G134100 Manihot esculenta HOM05D001486 ORTHO05D003845 1.7e-11 73.2 101 45.5
SEGI_09588 Sequoiadendron giganteum HOM05D001486 ORTHO05D003845 1.7e-11 73.2 138 39.9
CARHR144260 Cardamine hirsuta HOM05D001486 ORTHO05D003845 2.2e-11 72.8 95 48.4
Phvul.009G139600 Phaseolus vulgaris HOM05D001486 ORTHO05D031489 2.2e-11 72.8 87 51.7
Sed0004382 Sechium edule HOM05D001486 ORTHO05D003845 2.2e-11 72.8 95 44.2
Sc14g0006830 Simmondsia chinensis HOM05D001486 ORTHO05D003845 2.2e-11 72.8 100 41.0
BcaB07g30727 Brassica carinata HOM05D001486 ORTHO05D003845 3.7e-11 72.0 83 49.4
BcaC04g21556 Brassica carinata HOM05D001486 ORTHO05D003845 3.7e-11 72.0 83 49.4
A09p23570 Brassica napus HOM05D001486 ORTHO05D003845 3.7e-11 72.0 83 49.4
C09p30410 Brassica napus HOM05D001486 ORTHO05D003845 3.7e-11 72.0 83 49.4
BolC9t55904H Brassica oleracea HOM05D001486 ORTHO05D003845 3.7e-11 72.0 83 49.4
BraA09t37961Z Brassica rapa HOM05D001486 ORTHO05D003845 3.7e-11 72.0 83 49.4
Duzib268G0262 Durio zibethinus HOM05D001486 ORTHO05D003845 3.7e-11 72.0 89 50.6
Zm00001eb009100 Zea mays HOM05D001486 ORTHO05D003845 4.8e-11 71.6 117 41.9
BcaC03g17068 Brassica carinata HOM05D001486 ORTHO05D003845 6.3e-11 71.2 144 39.6
A06p44170 Brassica napus HOM05D001486 ORTHO05D003845 6.3e-11 71.2 133 40.6
BolC2t11065H Brassica oleracea HOM05D001486 ORTHO05D003845 6.3e-11 71.2 144 39.6
A02p32260 Brassica napus HOM05D001486 ORTHO05D003845 8.2e-11 70.9 83 47.0
BraA02t08243Z Brassica rapa HOM05D001486 ORTHO05D003845 8.2e-11 70.9 83 47.0
Lsat_1_v5_gn_8_46261 Lactuca sativa HOM05D001486 ORTHO05D003845 8.2e-11 70.9 124 43.5
HPP92_024794 Vanilla planifolia HOM05D001486 ORTHO05D003845 8.2e-11 70.9 117 43.6
HPP92_024797 Vanilla planifolia HOM05D001486 ORTHO05D003845 8.2e-11 70.9 117 43.6
AL5G10790 Arabidopsis lyrata HOM05D001486 ORTHO05D003845 1.4e-10 70.1 83 49.4
BraA06t27292Z Brassica rapa HOM05D001486 ORTHO05D003845 2.4e-10 69.3 133 39.8
Sp2g13150 Schrenkiella parvula HOM05D001486 ORTHO05D003845 2.4e-10 69.3 81 46.9
AT2G01690 Arabidopsis thaliana HOM05D001486 ORTHO05D003845 3.1e-10 68.9 83 48.2
Sed0007618 Sechium edule HOM05D001486 ORTHO05D003845 3.1e-10 68.9 136 36.8
BcaB07g30379 Brassica carinata HOM05D001486 ORTHO05D003845 5.3e-10 68.2 144 38.9
Carub.0005s0064 Capsella rubella HOM05D001486 ORTHO05D003845 6.9e-10 67.8 83 45.8
C02p49860 Brassica napus HOM05D001486 ORTHO05D003845 9.1e-10 67.4 144 38.2
Thhalv10003708m.g Eutrema salsugineum HOM05D001486 ORTHO05D003845 1.2e-09 67.0 100 43.0
AagrBONN_evm.TU.Sc2ySwM_228.2276 Anthoceros agrestis HOM05D001486 ORTHO05D003845 1.5e-09 66.6 112 37.5
Hma1.2p1_0940F.1_g239580 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 1.5e-09 66.6 76 47.4
BolC7t43769H Brassica oleracea HOM05D001486 ORTHO05D003845 4.5e-09 65.1 156 36.5
BcaC06g34133 Brassica carinata HOM05D001486 ORTHO05D003845 5.9e-09 64.7 88 44.3
C07p32330 Brassica napus HOM05D001486 ORTHO05D003845 1.0e-08 63.9 88 44.3
CDE04G1077 Ceratophyllum demersum HOM05D001486 ORTHO05D003845 1.0e-08 63.9 77 46.8
Oeu044012.1 Olea europaea HOM05D001486 ORTHO05D003845 1.3e-08 63.5 90 43.3
unitig_85.g27249 Utricularia gibba HOM05D001486 ORTHO05D003845 1.3e-08 63.5 112 41.1
Aa31LG1G250 Aethionema arabicum HOM05D001486 ORTHO05D003845 1.7e-08 63.2 83 45.8
Lsat_1_v5_gn_4_12500 Lactuca sativa HOM05D001486 ORTHO05D003845 1.7e-08 63.2 123 39.8
TWI77G0357 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 1.7e-08 63.2 98 40.8
CSS0024241 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 1.1e-07 60.5 109 38.5
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 3.2e-07 58.9 131 38.2
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 5.5e-07 58.2 103 39.8
Pp3c7_100 Physcomitrium patens HOM05D001486 ORTHO05D003845 5.5e-07 58.2 116 37.9
MSTRG.13626 Avicennia marina HOM05D001486 ORTHO05D003845 1.2e-06 57.0 105 41.0
TPR.G39980 Trifolium pratense HOM05D001486 ORTHO05D003845 2.7e-06 55.8 42 71.4
HPP92_020315 Vanilla planifolia HOM05D001486 ORTHO05D003845 3.6e-06 55.5 108 38.0
Pp3c8_19610 Physcomitrium patens HOM05D001486 ORTHO05D003845 7.9e-06 54.3 152 36.2


User provided reference genes

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