Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 8.2e-131 470.3 225 100.0
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 1.2e-36 157.5 84 88.1
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 5.5e-34 148.7 83 83.1
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 2.1e-33 146.7 83 81.9
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 4.6e-33 145.6 83 80.7
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 1.0e-32 144.4 81 82.7
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 1.0e-32 144.4 81 79.0
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 1.5e-31 140.6 86 74.4
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 7.4e-31 138.3 82 79.3
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 9.7e-31 137.9 82 79.3
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 2.0e-28 130.2 71 77.5
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 1.3e-27 127.5 71 74.6
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 2.9e-27 126.3 93 66.7
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 6.5e-27 125.2 78 70.5
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 4.2e-26 122.5 70 75.7
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 9.4e-26 121.3 118 52.5
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.6e-25 120.6 90 66.7
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 1.6e-25 120.6 61 85.2
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.6e-25 120.6 83 68.7
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 2.1e-25 120.2 75 72.0
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 2.7e-25 119.8 70 71.4
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 3.6e-25 119.4 84 66.7
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 4.6e-25 119.0 75 72.0
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.1e-25 118.6 84 66.7
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 6.1e-25 118.6 69 72.5
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 6.1e-25 118.6 89 60.7
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 6.1e-25 118.6 81 64.2
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 7.9e-25 118.2 94 63.8
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 1.0e-24 117.9 59 81.4
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 1.0e-24 117.9 96 59.4
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.0e-24 117.9 61 82.0
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 1.4e-24 117.5 81 63.0
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 1.8e-24 117.1 64 76.6
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 1.8e-24 117.1 82 65.9
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.8e-24 117.1 63 79.4
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.8e-24 117.1 60 83.3
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.8e-24 117.1 63 79.4
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.8e-24 117.1 63 79.4
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.8e-24 117.1 60 83.3
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 2.3e-24 116.7 61 80.3
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 2.3e-24 116.7 58 84.5
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 2.3e-24 116.7 63 77.8
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 2.3e-24 116.7 59 81.4
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 5.1e-24 115.5 86 64.0
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 5.1e-24 115.5 95 62.1
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 5.1e-24 115.5 83 62.7
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 5.1e-24 115.5 60 78.3
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.7e-24 115.2 60 81.7
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 6.7e-24 115.2 71 71.8
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 8.8e-24 114.8 71 71.8
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 1.1e-23 114.4 51 92.2
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 1.1e-23 114.4 51 92.2
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 1.5e-23 114.0 54 88.9
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 1.5e-23 114.0 51 92.2
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 2.0e-23 113.6 85 61.2
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 2.5e-23 113.2 78 64.1
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 3.3e-23 112.8 77 68.8
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 3.3e-23 112.8 61 78.7
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 4.3e-23 112.5 57 82.5
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 4.3e-23 112.5 85 62.4
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.3e-23 112.5 85 62.4
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.3e-23 112.5 85 62.4
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 5.7e-23 112.1 78 66.7
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 5.7e-23 112.1 51 88.2
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 7.4e-23 111.7 74 71.6
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 7.4e-23 111.7 50 90.0
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.3e-22 110.9 53 86.8
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 1.7e-22 110.5 54 88.9
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 1.7e-22 110.5 52 88.5
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 2.2e-22 110.2 50 90.0
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 2.8e-22 109.8 61 78.7
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 3.7e-22 109.4 84 60.7
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 3.7e-22 109.4 74 64.9
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 6.3e-22 108.6 64 68.8
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 6.3e-22 108.6 72 65.3
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 6.3e-22 108.6 85 61.2
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 8.2e-22 108.2 75 61.3
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 1.1e-21 107.8 49 89.8
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 1.1e-21 107.8 49 89.8
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 1.1e-21 107.8 49 89.8
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 1.1e-21 107.8 49 89.8
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 1.1e-21 107.8 49 89.8
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 1.1e-21 107.8 70 71.4
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 1.1e-21 107.8 49 89.8
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 1.8e-21 107.1 52 82.7
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 1.8e-21 107.1 50 84.0
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 2.4e-21 106.7 53 84.9
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 2.4e-21 106.7 52 82.7
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 2.4e-21 106.7 48 87.5
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 3.1e-21 106.3 49 85.7
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 6.9e-21 105.1 48 87.5
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 9.1e-21 104.8 50 82.0
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 9.1e-21 104.8 55 76.4
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 9.1e-21 104.8 50 82.0
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 2.0e-20 103.6 48 83.3
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 2.0e-20 103.6 48 83.3
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 2.0e-20 103.6 48 83.3
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 3.4e-20 102.8 83 60.2
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 3.4e-20 102.8 81 59.3
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 7.7e-20 101.7 48 85.4
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 1.3e-19 100.9 55 78.2
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 2.2e-19 100.1 79 54.4
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 2.2e-19 100.1 50 80.0
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 3.8e-19 99.4 60 66.7
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 1.9e-18 97.1 63 61.9
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 2.5e-18 96.7 49 79.6
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 2.5e-18 96.7 64 59.4
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 3.2e-18 96.3 67 56.7
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 3.2e-18 96.3 45 77.8
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 1.6e-17 94.0 61 70.5
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 2.1e-17 93.6 74 56.8
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 2.3e-16 90.1 46 78.3
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 5.1e-16 89.0 48 68.8
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 1.7e-14 84.0 48 66.7
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 2.8e-14 83.2 49 61.2
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 8.2e-14 81.6 53 60.4
Medtr8g011510 Medicago truncatula HOM05D004226 ORTHO05D004842 1.3e-11 74.3 120 43.3
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 1.1e-10 71.2 130 33.1
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 2.7e-09 66.6 130 30.0
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 8.0e-09 65.1 130 29.2
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 6.7e-08 62.0 141 31.9
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 3.3e-07 59.7 129 33.3
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 4.4e-07 59.3 129 34.1
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 4.4e-07 59.3 129 33.3
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 4.4e-07 59.3 129 32.6
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 7.5e-07 58.5 129 33.3
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 1.3e-06 57.8 128 30.5
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 2.2e-06 57.0 128 32.8
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 2.8e-06 56.6 128 31.2


User provided reference genes

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