Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 0.0e+00 1118.6 608 100.0
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 6.1e-205 718.0 708 63.8
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.2e-192 677.2 610 67.9
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 3.5e-128 463.0 673 52.0
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.1e-116 424.9 618 51.0
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 6.3e-101 372.5 672 44.3
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.8e-100 370.9 670 45.1
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.7e-90 337.8 665 43.9
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.2e-88 331.6 736 41.4
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 7.2e-81 305.8 670 40.7
TPR.G7025 Trifolium pratense HOM05D000472 ORTHO05D007526 8.1e-40 169.5 217 52.5
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 3.3e-33 147.5 335 34.0
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 1.6e-32 145.2 255 37.6
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.3e-29 135.6 169 45.0
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.7e-29 135.2 218 41.3
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 2.9e-29 134.4 332 32.8
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 6.4e-29 133.3 183 41.0
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 8.4e-29 132.9 356 31.2
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.9e-28 131.7 390 31.5
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.9e-28 131.7 390 31.5
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 2.4e-28 131.3 409 32.3
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 4.2e-28 130.6 419 31.0
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 4.2e-28 130.6 340 32.1
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 4.2e-28 130.6 434 29.3
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 5.4e-28 130.2 172 43.0
TPR.G20164 Trifolium pratense HOM05D006278 ORTHO05D007526 1.6e-27 128.6 119 64.7
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 1.3e-26 125.6 292 36.3
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.8e-26 125.2 334 32.0
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 3.0e-26 124.4 206 36.9
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 5.1e-26 123.6 299 35.8
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.1e-25 122.5 277 35.0
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.1e-25 122.5 262 35.9
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 3.3e-25 120.9 188 38.8
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 5.6e-25 120.2 338 33.4
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 9.6e-25 119.4 671 28.0
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 9.6e-25 119.4 397 30.0
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.8e-24 117.9 241 33.6
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 3.7e-24 117.5 264 33.3
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 4.8e-24 117.1 226 40.7
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 6.2e-24 116.7 247 34.0
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.1e-23 115.9 243 35.4
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.1e-23 115.9 423 28.4
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.4e-23 115.5 236 39.0
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.4e-23 114.8 308 32.8
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 3.1e-23 114.4 322 30.7
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.3e-23 113.6 308 32.5
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 1.5e-22 112.1 451 28.4
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 1.3e-21 109.0 409 30.6
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 1.7e-21 108.6 328 30.2
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 1.7e-21 108.6 263 33.1
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 2.9e-21 107.8 389 29.8
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 4.9e-21 107.1 336 31.0
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 8.4e-21 106.3 185 34.6
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 8.4e-21 106.3 381 33.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.4e-21 106.3 385 28.6
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.1e-20 105.9 429 27.3
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.1e-20 105.9 543 27.3
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 2.5e-20 104.8 474 28.1
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 2.5e-20 104.8 183 40.4
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 2.5e-20 104.8 206 37.9
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 9.3e-20 102.8 426 27.7
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.6e-19 102.1 416 29.3
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 2.1e-19 101.7 591 26.1
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.7e-19 101.3 240 34.2
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.7e-19 101.3 329 28.0
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 2.7e-19 101.3 363 29.5
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.5e-19 100.9 224 35.3
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 7.9e-19 99.8 445 27.4
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 1.3e-18 99.0 381 29.7
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.3e-18 99.0 273 33.0
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 2.3e-18 98.2 260 37.3
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 3.0e-18 97.8 266 32.0
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 3.0e-18 97.8 392 29.1
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.1e-18 97.1 653 27.4
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 5.1e-18 97.1 281 33.1
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 6.7e-18 96.7 337 32.0
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 6.7e-18 96.7 424 25.5
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 1.1e-17 95.9 103 53.4
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 1.1e-17 95.9 480 28.3
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.5e-17 95.5 316 33.2
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.9e-17 95.1 385 28.1
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 4.3e-17 94.0 688 25.6
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 5.6e-17 93.6 408 28.2
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 7.4e-17 93.2 445 25.8
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 1.6e-16 92.0 146 39.7
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.6e-16 92.0 304 30.6
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 3.7e-16 90.9 529 28.2
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.7e-16 90.9 407 27.3
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 6.2e-16 90.1 244 31.6
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 6.2e-16 90.1 168 35.1
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 6.2e-16 90.1 274 29.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 8.2e-16 89.7 381 28.9
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 1.1e-15 89.4 249 27.7
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 1.4e-15 89.0 244 30.7
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 1.4e-15 89.0 277 29.2
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 4.0e-15 87.4 611 24.9
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 5.3e-15 87.0 166 35.5
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 6.9e-15 86.7 166 35.5
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 9.0e-15 86.3 214 31.3
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 9.0e-15 86.3 373 26.5
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 7.6e-14 83.2 212 32.5
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 7.6e-14 83.2 258 29.1
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 1.7e-13 82.0 244 29.9
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 8.4e-13 79.7 369 24.7
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 1.9e-12 78.6 180 34.4
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 2.5e-12 78.2 210 30.0
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 2.5e-12 78.2 197 29.9
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 2.5e-12 78.2 229 33.6
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 9.3e-12 76.3 160 36.2
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 3.5e-11 74.3 419 25.8
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 3.0e-10 71.2 159 36.5
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.9e-09 68.6 103 42.7
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.5e-09 68.2 188 31.4
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 5.7e-09 67.0 379 26.4
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 5.7e-09 67.0 245 29.0
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 9.7e-09 66.2 299 29.4
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 1.3e-08 65.9 245 29.0
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.3e-08 65.9 142 33.1
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.6e-08 65.5 202 30.7
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 1.6e-08 65.5 114 36.0
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 2.2e-08 65.1 167 32.3
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 2.8e-08 64.7 370 27.0
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.1e-07 62.8 123 35.0
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.1e-07 62.8 121 34.7
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.4e-07 61.6 384 23.2
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.1e-07 61.2 127 34.6
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 4.1e-07 60.8 119 35.3
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 5.3e-07 60.5 167 26.3
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 6.9e-07 60.1 110 34.5
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 6.9e-07 60.1 628 25.2
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 6.9e-07 60.1 114 36.0
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.2e-06 59.3 114 36.0
Medtr1g023790 Medicago truncatula HOM05D006278 ORTHO05D007526 1.5e-06 58.9 39 71.8
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.5e-06 58.9 113 33.6
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.0e-06 58.5 109 33.0
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.0e-06 58.5 239 29.3
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.0e-06 58.5 145 30.3
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.4e-06 57.8 127 33.1
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.4e-06 57.8 110 36.4
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 4.5e-06 57.4 163 34.4
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 5.9e-06 57.0 123 32.5
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 7.7e-06 56.6 176 34.1
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 7.7e-06 56.6 145 31.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.0e-05 56.2 139 29.5
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 1.0e-05 56.2 138 31.2


User provided reference genes

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