Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 8.3e-199 696.8 348 100.0
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 7.9e-173 610.5 348 89.1
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.8e-170 602.1 348 88.5
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.7e-165 585.5 308 93.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 3.5e-165 585.1 348 85.3
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.8e-164 582.8 348 84.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 2.3e-164 582.4 351 84.3
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 9.6e-163 577.0 349 84.5
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 2.8e-162 575.5 349 83.1
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 5.3e-161 571.2 327 85.9
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 6.1e-157 557.8 325 85.2
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 8.5e-151 537.3 349 77.1
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.9e-150 536.2 326 81.0
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.2e-150 535.4 349 76.5
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.2e-150 534.3 348 76.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 3.6e-149 531.9 327 79.8
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 3.6e-149 531.9 355 74.9
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 6.1e-149 531.2 348 75.6
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 7.9e-149 530.8 326 79.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.0e-148 530.4 349 76.5
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.0e-148 530.4 348 77.3
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.4e-148 530.0 348 76.4
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.8e-148 529.6 349 76.5
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 3.0e-148 528.9 345 75.4
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.3e-147 525.4 333 78.4
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.4e-147 524.2 331 77.3
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 7.4e-147 524.2 327 78.3
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 9.7e-147 523.9 336 77.4
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.3e-146 523.5 341 75.4
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.7e-146 523.1 328 78.7
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.2e-146 522.7 326 77.3
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.7e-146 521.9 334 77.2
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 4.8e-146 521.5 326 77.9
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 6.3e-146 521.2 326 77.0
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 6.3e-146 521.2 327 77.1
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 8.2e-146 520.8 326 79.1
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.1e-145 520.4 328 78.7
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.8e-145 519.6 348 73.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.8e-145 519.6 328 77.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.8e-145 519.6 334 76.9
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.4e-145 519.2 345 73.9
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.1e-145 518.8 327 76.5
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.1e-145 518.8 330 76.4
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 4.1e-145 518.5 327 78.0
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 6.9e-145 517.7 328 77.4
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 9.1e-145 517.3 326 76.7
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.0e-144 516.2 308 80.2
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.0e-144 516.2 328 76.2
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 5.9e-144 514.6 348 73.9
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.7e-144 514.2 336 75.9
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 1.3e-143 513.5 351 72.6
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.7e-143 513.1 337 75.7
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.7e-143 513.1 320 80.0
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.9e-143 512.3 345 73.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 5.0e-143 511.5 327 75.8
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 5.0e-143 511.5 326 76.1
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 6.5e-143 511.1 350 74.0
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 6.5e-143 511.1 323 78.3
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 8.5e-143 510.8 327 75.5
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.9e-142 509.6 361 71.5
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.5e-142 509.2 327 75.8
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.5e-142 509.2 327 75.8
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 4.2e-142 508.4 327 75.2
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 4.2e-142 508.4 327 75.8
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.6e-141 506.5 309 81.6
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.7e-141 505.8 335 76.1
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 3.6e-141 505.4 328 75.6
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 3.0e-140 502.3 328 75.3
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 5.1e-140 501.5 341 72.1
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 5.1e-140 501.5 309 79.0
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.7e-140 501.1 354 70.3
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.7e-140 501.1 354 70.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.1e-139 500.4 350 72.0
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 5.7e-139 498.0 376 68.1
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 2.8e-138 495.7 403 64.8
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 3.7e-138 495.4 298 78.2
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.1e-137 493.8 335 74.3
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 5.3e-137 491.5 328 72.9
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 5.3e-137 491.5 318 75.5
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 5.3e-137 491.5 307 78.5
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 5.3e-137 491.5 348 70.7
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 7.0e-137 491.1 335 74.0
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 9.1e-137 490.7 291 81.1
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 7.7e-136 487.6 312 74.0
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.7e-135 486.5 313 76.0
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 6.5e-135 484.6 290 79.3
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 9.4e-134 480.7 326 73.9
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.1e-133 479.6 283 80.2
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 3.6e-133 478.8 334 73.7
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 3.6e-133 478.8 270 84.4
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 4.7e-133 478.4 330 73.3
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 6.1e-133 478.0 325 73.5
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.0e-132 477.2 332 71.1
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.8e-132 476.5 310 74.2
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 4.0e-132 475.3 356 67.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.1e-131 473.8 348 69.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.3e-131 472.2 326 73.3
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.3e-131 472.2 336 71.4
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 3.3e-131 472.2 341 68.9
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.7e-128 462.6 320 70.9
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.9e-127 459.1 272 80.5
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 6.5e-127 458.0 347 67.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.8e-124 449.9 270 79.6
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.6e-123 446.0 365 65.5
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 1.8e-121 439.9 293 74.4
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 5.4e-121 438.3 319 70.5
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 2.7e-117 426.0 321 66.4
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.6e-117 425.6 282 74.5
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 2.4e-113 412.9 287 70.0
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 3.1e-113 412.5 302 70.9
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.1e-113 412.1 326 66.0
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 9.2e-113 411.0 299 71.6
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.0e-112 409.8 299 65.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.0e-111 407.5 303 65.3
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 6.4e-106 388.3 260 74.6
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.3e-103 380.6 262 72.1
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.7e-103 380.2 292 67.1
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.5e-99 367.1 270 69.3
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.9e-97 360.1 297 62.0
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 4.3e-94 349.0 241 77.2
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 7.5e-91 338.2 228 73.7
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 6.2e-85 318.5 222 73.4
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.4e-65 253.4 139 85.6
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.2e-65 252.7 348 45.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.0e-63 248.1 153 75.2
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 8.4e-58 228.4 171 69.0
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.1e-57 228.0 139 78.4
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 6.7e-55 218.8 132 77.3
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 6.7e-55 218.8 108 91.7
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.8e-50 203.0 158 67.1
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.9e-49 200.7 108 84.3
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 3.9e-39 166.4 129 59.7
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 5.1e-39 166.0 283 42.0
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 9.7e-38 161.8 112 70.5
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 7.7e-35 152.1 309 34.0
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 2.1e-32 144.1 117 63.2
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.2e-26 124.0 199 41.2
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 9.4e-25 118.6 86 67.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.1e-22 111.7 287 30.0
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.4e-20 104.0 84 57.1
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 4.5e-19 99.8 71 66.2
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-17 94.7 92 55.4
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.9e-17 94.4 93 55.9
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.9e-17 94.4 53 79.2
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 3.2e-17 93.6 52 82.7
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 5.5e-17 92.8 81 53.1
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 7.2e-17 92.4 53 84.9
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.8e-15 87.8 53 75.5
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 2.2e-10 70.9 37 78.4
arahy.Tifrunner.gnm1.ann1.8K4VEX Arachis hypogaea HOM05D000217 ORTHO05D000121 8.8e-07 58.9 62 56.5
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 9.8e-06 55.5 35 74.3
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 9.8e-06 55.5 58 55.2


User provided reference genes

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