Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 1.2e-88 329.7 158 100.0
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 1.4e-81 306.2 158 92.4
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 4.1e-76 288.1 155 88.4
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 1.1e-68 263.5 154 83.1
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 1.4e-68 263.1 154 80.5
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 2.4e-68 262.3 152 83.6
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 2.0e-67 259.2 152 83.6
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 3.6e-64 248.4 159 78.6
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 1.7e-61 239.6 152 78.9
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 8.2e-61 237.3 156 71.2
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 1.8e-60 236.1 158 69.6
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 7.0e-60 234.2 154 73.4
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 7.0e-60 234.2 157 70.1
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.2e-59 233.4 146 76.0
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 1.6e-59 233.0 154 72.7
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 2.0e-59 232.6 155 71.0
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 2.2e-58 229.2 156 71.2
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 3.8e-58 228.4 158 70.3
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 3.8e-58 228.4 140 76.4
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 8.5e-58 227.3 156 70.5
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.9e-57 226.1 143 73.4
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 7.2e-57 224.2 147 74.8
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 1.2e-56 223.4 159 67.9
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 1.6e-56 223.0 156 68.6
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 1.6e-56 223.0 156 68.6
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 1.6e-56 223.0 159 68.6
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 2.1e-56 222.6 156 68.6
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 2.1e-56 222.6 156 68.6
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 3.6e-56 221.9 155 69.7
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 4.7e-56 221.5 156 66.7
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 6.1e-56 221.1 156 69.2
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 1.4e-55 219.9 143 72.7
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 2.3e-55 219.2 156 67.3
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 3.0e-55 218.8 155 69.7
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 1.5e-54 216.5 140 72.1
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.5e-54 216.5 157 65.0
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 1.5e-54 216.5 156 69.2
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 2.0e-54 216.1 156 69.2
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 2.6e-54 215.7 140 72.1
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 3.3e-54 215.3 140 71.4
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 3.3e-54 215.3 158 70.9
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 4.4e-54 214.9 146 71.2
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 7.5e-54 214.2 157 64.3
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 7.5e-54 214.2 157 64.3
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 9.7e-54 213.8 146 71.2
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 3.7e-53 211.8 150 71.3
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 3.7e-53 211.8 148 70.9
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 4.8e-53 211.5 151 67.5
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 1.1e-52 210.3 146 69.2
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 1.4e-52 209.9 140 70.0
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 1.8e-52 209.5 156 66.0
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 2.0e-51 206.1 143 69.9
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 2.7e-51 205.7 145 70.3
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 4.5e-51 204.9 145 68.3
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 7.7e-51 204.1 145 68.3
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 1.0e-50 203.8 145 69.0
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 1.3e-50 203.4 140 70.0
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 1.3e-50 203.4 147 67.3
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 2.2e-50 202.6 150 68.0
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 2.2e-50 202.6 146 68.5
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 7.2e-49 197.6 142 67.6
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 9.4e-49 197.2 159 63.5
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 3.6e-48 195.3 140 68.6
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 4.7e-48 194.9 153 64.1
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 1.0e-47 193.7 156 63.5
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 8.8e-47 190.7 158 60.8
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 1.5e-46 189.9 141 68.8
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 3.4e-46 188.7 141 68.1
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 5.7e-46 188.0 148 64.2
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 1.1e-44 183.7 150 62.7
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 3.8e-42 175.3 148 60.1
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 1.5e-41 173.3 135 65.9
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 2.1e-40 169.5 132 65.2
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 3.0e-39 165.6 156 55.1
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 6.6e-34 147.9 99 68.7
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 4.7e-32 141.7 137 51.8
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 6.1e-32 141.4 146 50.0
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 6.1e-32 141.4 146 50.0
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 6.1e-32 141.4 158 49.4
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 6.1e-32 141.4 146 50.7
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 8.0e-32 141.0 146 50.0
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 8.0e-32 141.0 146 50.0
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 1.4e-31 140.2 138 53.6
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 1.8e-31 139.8 146 50.7
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 2.3e-31 139.4 146 49.3
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 3.0e-31 139.0 138 50.7
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 1.5e-30 136.7 138 51.4
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 2.6e-30 136.0 144 49.3
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 1.7e-29 133.3 151 48.3
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 2.2e-29 132.9 139 46.0
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 3.2e-28 129.0 126 49.2
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 3.0e-26 122.5 72 81.9
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 2.8e-24 115.9 75 72.0
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 7.5e-22 107.8 93 60.2
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 7.0e-20 101.3 62 69.4
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 1.5e-17 93.6 65 69.2
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.8e-15 86.7 121 39.7
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 6.8e-15 84.7 119 38.7


User provided reference genes

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