Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 9.2e-125 450.3 235 100.0
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.9e-78 295.8 187 83.4
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.2e-76 290.4 186 78.5
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.1e-48 197.6 191 60.7
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.2e-47 194.1 193 59.1
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 3.5e-47 192.6 194 61.3
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.5e-47 192.2 191 59.2
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 7.2e-45 184.9 188 57.4
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 5.9e-39 165.2 176 55.7
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.0e-35 154.5 177 53.1
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.4e-35 154.1 185 50.3
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 9.8e-34 147.9 195 50.3
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 7.0e-32 141.7 190 47.9
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 9.1e-32 141.4 194 49.0
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 9.1e-32 141.4 195 48.7
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 2.7e-31 139.8 194 48.5
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.7e-31 139.8 194 48.5
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.5e-31 139.4 194 48.5
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 5.9e-31 138.7 193 47.7
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 7.7e-31 138.3 191 42.4
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.7e-30 137.1 194 47.9
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 5.0e-30 135.6 194 45.4
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 2.5e-29 133.3 196 46.4
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.5e-29 133.3 197 48.7
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 3.2e-29 132.9 189 45.0
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 3.2e-29 132.9 192 48.4
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 7.2e-29 131.7 198 48.0
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.2e-28 131.0 193 47.2
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.6e-28 130.6 180 45.0
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.7e-28 129.8 193 44.0
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 8.0e-28 128.3 232 40.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 8.0e-28 128.3 190 45.3
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 2.3e-27 126.7 196 42.9
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-27 126.3 195 43.1
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 5.2e-27 125.6 195 42.6
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-26 124.0 186 41.9
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.4e-26 122.9 195 42.1
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.4e-26 122.9 184 42.4
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.4e-26 122.5 186 41.9
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 5.7e-26 122.1 198 40.9
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.8e-26 121.3 186 41.4
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-25 120.9 186 41.4
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-25 120.6 184 42.9
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-25 120.6 186 41.4
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-25 119.4 186 40.9
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-25 119.4 184 41.8
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 8.3e-25 118.2 200 41.0
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.8e-24 117.1 178 46.1
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.8e-24 117.1 182 42.9
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.1e-24 115.9 182 41.2
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 5.4e-24 115.5 192 43.2
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 5.4e-24 115.5 195 42.6
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.0e-23 113.6 184 40.8
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 2.7e-23 113.2 191 42.4
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.7e-23 113.2 183 40.4
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.5e-23 112.8 176 44.3
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 4.5e-23 112.5 188 45.2
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 4.5e-23 112.5 188 45.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 4.5e-23 112.5 176 42.6
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 7.7e-23 111.7 192 43.2
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-22 111.3 180 38.9
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.0e-22 111.3 182 40.1
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.7e-22 110.5 188 42.0
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 2.3e-22 110.2 192 39.1
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.9e-22 109.8 184 42.4
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.5e-21 107.5 207 37.7
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 2.5e-21 106.7 195 39.5
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 3.3e-21 106.3 170 41.8
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 4.3e-21 105.9 184 42.4
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.3e-21 105.9 151 43.7
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.3e-21 105.9 177 39.0
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 7.3e-21 105.1 185 37.3
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 7.3e-21 105.1 222 37.8
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 9.5e-21 104.8 202 41.6
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.1e-20 103.6 188 41.0
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 4.7e-20 102.4 234 36.3
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 4.7e-20 102.4 190 40.0
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 1.4e-19 100.9 186 40.3
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.8e-19 100.5 149 44.3
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 1.8e-19 100.5 158 41.8
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-19 100.1 140 42.1
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-19 100.1 140 42.1
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 3.0e-19 99.8 182 39.6
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 4.0e-19 99.4 197 41.1
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 6.8e-19 98.6 198 39.9
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 8.9e-19 98.2 180 37.2
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 8.9e-19 98.2 194 38.7
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 2.0e-18 97.1 193 38.3
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.0e-18 97.1 190 39.5
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 9.8e-18 94.7 182 39.6
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 9.8e-18 94.7 183 39.9
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 9.8e-18 94.7 183 39.9
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.3e-17 94.4 185 38.9
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.3e-17 94.4 200 37.5
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.3e-17 94.4 209 34.9
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.2e-17 93.6 181 38.1
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.2e-17 93.6 145 42.8
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 2.9e-17 93.2 190 38.9
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 2.9e-17 93.2 190 38.9
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 6.4e-17 92.0 226 34.5
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 8.3e-17 91.7 179 36.9
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 8.3e-17 91.7 185 37.3
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 8.3e-17 91.7 179 37.4
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.1e-16 91.3 181 38.1
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.4e-16 90.1 188 36.7
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 3.2e-16 89.7 189 36.5
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 4.1e-16 89.4 160 38.8
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 5.4e-16 89.0 175 37.7
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 7.0e-16 88.6 181 37.6
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 7.0e-16 88.6 181 37.6
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-15 87.8 175 38.9
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.6e-15 87.4 188 36.7
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 2.0e-15 87.0 180 35.0
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.0e-15 87.0 186 36.0
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.0e-15 87.0 185 34.6
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.7e-15 86.7 177 38.4
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.7e-15 86.7 84 60.7
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 3.5e-15 86.3 120 42.5
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 3.5e-15 86.3 180 37.8
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.6e-15 85.9 162 40.1
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 4.6e-15 85.9 182 34.6
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.9e-15 85.5 187 38.5
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.0e-14 84.7 186 37.6
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 3.9e-14 82.8 103 46.6
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 5.0e-14 82.4 117 47.9
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 6.6e-14 82.0 184 33.7
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 8.6e-14 81.6 175 35.4
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 8.6e-14 81.6 175 35.4
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 8.6e-14 81.6 189 40.2
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-13 81.3 182 34.6
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.1e-13 81.3 193 35.2
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.1e-13 81.3 188 34.0
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-13 80.9 194 35.1
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 1.9e-13 80.5 175 35.4
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 2.5e-13 80.1 181 34.8
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 5.6e-13 79.0 188 36.2
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 1.6e-12 77.4 176 35.8
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.6e-12 77.4 138 35.5
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.6e-12 77.4 91 56.0
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.0e-11 74.7 164 37.2
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-11 73.9 175 32.0
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-11 73.9 188 33.5
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.8e-11 73.9 188 33.5
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.3e-11 73.6 103 43.7
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-11 73.2 57 59.6
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-11 73.2 57 59.6
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 4.0e-11 72.8 148 35.1
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-10 70.5 174 33.9
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 2.0e-10 70.5 174 33.9
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.4e-10 69.3 145 31.0
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 7.5e-10 68.6 81 51.9
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 9.8e-10 68.2 223 28.7
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-09 67.8 182 31.3
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.3e-09 67.8 88 40.9
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.2e-09 67.0 193 33.2
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 2.2e-09 67.0 154 33.1
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.9e-09 66.6 102 42.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 8.3e-09 65.1 170 34.7
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 4.1e-08 62.8 89 40.4
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 4.1e-08 62.8 89 40.4
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 7.0e-08 62.0 200 31.0
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 7.0e-08 62.0 136 36.0
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-07 60.8 136 34.6
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-07 60.8 136 34.6
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 2.0e-07 60.5 122 35.2
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 5.0e-06 55.8 138 33.3
VMungo1309G1209 Vigna mungo HOM05D033454 ORTHO05D050263 5.0e-06 55.8 83 41.0
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.6e-06 55.5 136 32.4


User provided reference genes

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