Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 1.7e-128 462.6 227 100.0
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 5.1e-112 407.9 222 89.2
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 3.1e-109 398.7 227 85.9
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 6.4e-83 311.2 164 90.2
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 1.9e-82 309.7 222 72.1
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 1.3e-80 303.5 224 71.4
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 1.3e-78 297.0 202 73.8
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 3.7e-78 295.4 211 72.5
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 9.3e-74 280.8 177 78.0
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.2e-73 280.4 219 65.3
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 4.6e-73 278.5 168 76.8
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 7.9e-73 277.7 162 79.6
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 1.3e-72 276.9 186 71.0
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.0e-72 275.8 207 67.1
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 3.9e-72 275.4 199 66.3
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 3.9e-72 275.4 210 64.8
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 6.7e-72 274.6 212 63.7
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 8.7e-72 274.2 191 68.6
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 1.1e-71 273.9 209 66.5
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 1.1e-71 273.9 208 63.9
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 1.5e-71 273.5 189 68.3
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 1.5e-71 273.5 170 75.9
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 3.3e-71 272.3 185 68.1
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 5.7e-71 271.6 201 66.7
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 7.4e-71 271.2 184 70.7
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 7.4e-71 271.2 184 71.2
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 7.4e-71 271.2 177 74.6
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 9.6e-71 270.8 207 66.7
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 1.6e-70 270.0 178 70.8
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.1e-70 269.6 190 69.5
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 2.1e-70 269.6 165 77.0
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 2.1e-70 269.6 169 72.8
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 2.8e-70 269.2 168 73.2
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 2.8e-70 269.2 165 75.8
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 3.7e-70 268.9 162 78.4
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 3.7e-70 268.9 214 64.5
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 4.8e-70 268.5 168 72.6
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 4.8e-70 268.5 184 68.5
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 4.8e-70 268.5 173 71.7
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 6.2e-70 268.1 192 65.6
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 8.2e-70 267.7 165 75.8
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 1.8e-69 266.5 179 69.8
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 1.8e-69 266.5 201 64.2
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 1.8e-69 266.5 198 61.6
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.4e-69 266.2 166 75.3
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.4e-69 266.2 162 76.5
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 2.4e-69 266.2 200 64.5
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 4.1e-69 265.4 210 62.4
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 4.1e-69 265.4 168 72.6
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 4.1e-69 265.4 165 74.5
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.1e-69 265.4 168 75.0
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.1e-69 265.4 165 75.8
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.1e-69 265.4 198 61.6
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 1.2e-68 263.8 165 73.3
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 1.5e-68 263.5 176 69.9
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 2.0e-68 263.1 173 71.1
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.0e-68 263.1 171 72.5
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 2.6e-68 262.7 166 73.5
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 3.4e-68 262.3 168 69.6
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 3.4e-68 262.3 178 69.1
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 4.5e-68 261.9 179 68.7
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 1.0e-67 260.8 161 75.2
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 3.8e-67 258.8 166 71.1
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 5.0e-67 258.5 216 59.3
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 6.5e-67 258.1 165 72.1
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 6.5e-67 258.1 199 61.3
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 1.4e-66 256.9 192 65.1
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 2.5e-66 256.1 161 72.7
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 3.2e-66 255.8 165 72.1
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 4.2e-66 255.4 167 70.7
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 5.5e-66 255.0 210 60.0
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 1.6e-65 253.4 162 71.6
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 4.6e-65 251.9 176 69.3
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 1.1e-63 247.3 210 56.7
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 2.5e-63 246.1 165 67.3
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 4.3e-63 245.4 197 58.4
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 5.7e-63 245.0 168 65.5
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 7.4e-63 244.6 173 65.9
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 7.4e-63 244.6 168 64.9
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 9.7e-63 244.2 167 66.5
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 8.2e-62 241.1 167 64.1
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 1.8e-61 240.0 168 66.1
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 4.1e-61 238.8 167 63.5
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 4.1e-61 238.8 167 63.5
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 4.1e-61 238.8 167 63.5
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 2.6e-60 236.1 164 64.0
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 2.6e-60 236.1 164 64.0
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 4.5e-60 235.3 167 62.9
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 1.0e-59 234.2 164 63.4
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 1.0e-59 234.2 164 63.4
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 1.3e-59 233.8 188 62.2
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 2.9e-59 232.6 205 57.1
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 3.8e-59 232.3 165 69.1
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 3.9e-56 222.2 177 59.3
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 4.8e-54 215.3 138 71.0
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 3.1e-53 212.6 182 54.9
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.7e-51 206.8 177 55.4
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 1.9e-50 203.4 168 66.1
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 3.3e-47 192.6 122 71.3
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 4.4e-47 192.2 172 62.2
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.7e-46 190.3 146 61.0
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 4.8e-46 188.7 165 54.5
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 1.0e-43 181.0 119 77.3
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 8.5e-43 177.9 184 50.5
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 3.2e-42 176.0 113 75.2
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 7.2e-42 174.9 111 79.3
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 1.8e-40 170.2 114 70.2
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 1.5e-39 167.2 155 51.6
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 9.1e-37 157.9 175 45.1
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 6.5e-35 151.8 107 67.3
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 1.5e-34 150.6 128 54.7
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 6.1e-33 145.2 90 68.9
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 8.3e-30 134.8 122 52.5
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 8.5e-27 124.8 208 31.2
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 1.1e-21 107.8 163 38.0
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 7.2e-18 95.1 163 34.4
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 2.1e-17 93.6 51 78.4
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.4e-16 90.9 55 72.7
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 2.6e-15 86.7 59 61.0
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 5.7e-15 85.5 54 66.7
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 5.7e-15 85.5 54 66.7
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 8.3e-14 81.6 71 56.3
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 6.8e-08 62.0 38 71.1
Sabra16G0183400 Salix brachista HOM05D002857 ORTHO05D008347 2.2e-06 57.0 51 56.9


User provided reference genes

Program Settings