Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.2e-42 175.3 89 100.0
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.1e-29 132.1 71 93.0
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 4.7e-29 131.0 70 92.9
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 5.2e-28 127.5 71 88.7
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 6.7e-28 127.1 71 88.7
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.6e-27 125.2 69 88.4
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.6e-27 125.2 69 88.4
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 7.5e-27 123.6 76 82.9
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.3e-26 122.9 71 85.9
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.2e-26 122.1 71 85.9
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 6.3e-26 120.6 69 84.1
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 6.3e-26 120.6 69 85.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 6.3e-26 120.6 69 85.5
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.1e-25 119.8 69 84.1
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.4e-25 119.4 76 80.3
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.3e-23 112.8 69 79.7
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.0e-23 110.9 69 73.9
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 6.5e-23 110.5 70 75.7
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.5e-23 110.5 69 75.4
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 8.5e-23 110.2 69 75.4
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 8.5e-23 110.2 69 73.9
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 8.5e-23 110.2 69 73.9
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.1e-22 109.8 69 79.7
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.9e-22 109.0 69 73.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.5e-22 108.6 69 75.4
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 2.5e-22 108.6 69 73.9
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.5e-22 108.6 69 76.8
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 3.2e-22 108.2 69 73.9
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.2e-22 108.2 69 76.8
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.2e-22 108.2 67 76.1
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 4.2e-22 107.8 69 73.9
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 5.5e-22 107.5 69 72.5
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 5.5e-22 107.5 67 74.6
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 7.2e-22 107.1 69 71.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 9.4e-22 106.7 69 72.5
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.2e-21 106.3 69 72.5
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.1e-21 105.5 69 75.4
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.1e-21 105.5 87 59.8
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.1e-21 105.5 69 69.6
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 2.7e-21 105.1 69 72.5
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 2.7e-21 105.1 69 73.9
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 2.7e-21 105.1 69 73.9
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 2.7e-21 105.1 69 71.0
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 3.6e-21 104.8 69 71.0
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 3.6e-21 104.8 67 73.1
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 4.7e-21 104.4 69 73.9
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 4.7e-21 104.4 69 68.1
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 6.1e-21 104.0 69 73.9
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 6.1e-21 104.0 69 73.9
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 6.1e-21 104.0 69 71.0
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 6.1e-21 104.0 69 72.5
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 6.1e-21 104.0 69 71.0
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 8.0e-21 103.6 69 72.5
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 8.0e-21 103.6 69 73.9
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 8.0e-21 103.6 69 69.6
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 8.0e-21 103.6 67 73.1
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 8.0e-21 103.6 67 73.1
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.0e-20 103.2 69 71.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.0e-20 103.2 69 71.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.0e-20 103.2 69 71.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.4e-20 102.8 67 74.6
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.4e-20 102.8 69 71.0
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.8e-20 102.4 69 71.0
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.3e-20 102.1 67 71.6
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.3e-20 102.1 69 69.6
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.3e-20 102.1 69 71.0
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 2.3e-20 102.1 69 72.5
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 3.0e-20 101.7 69 72.5
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 3.0e-20 101.7 69 72.5
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 3.0e-20 101.7 69 72.5
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.0e-20 101.7 69 69.6
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 4.0e-20 101.3 67 71.6
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 4.0e-20 101.3 69 71.0
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.0e-20 101.3 69 71.0
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.0e-20 101.3 69 71.0
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 4.0e-20 101.3 69 72.5
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 4.0e-20 101.3 69 69.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.2e-20 100.9 69 68.1
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 5.2e-20 100.9 69 68.1
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 5.2e-20 100.9 67 70.1
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 6.8e-20 100.5 69 68.1
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 6.8e-20 100.5 69 68.1
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 6.8e-20 100.5 69 68.1
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 6.8e-20 100.5 69 71.0
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 6.8e-20 100.5 69 71.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.8e-20 100.5 69 71.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 6.8e-20 100.5 69 69.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.8e-20 100.1 69 71.0
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 8.8e-20 100.1 69 63.8
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 8.8e-20 100.1 69 71.0
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 8.8e-20 100.1 73 64.4
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.8e-20 100.1 69 69.6
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-19 99.8 69 69.6
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.2e-19 99.8 67 73.1
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.2e-19 99.8 69 71.0
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.5e-19 99.4 69 66.7
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.0e-19 99.0 69 66.7
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.0e-19 99.0 69 65.2
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 2.6e-19 98.6 69 68.1
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.6e-19 98.6 69 63.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.6e-19 98.6 71 66.2
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.6e-19 98.6 69 68.1
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 2.6e-19 98.6 69 68.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.4e-19 98.2 69 65.2
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 3.4e-19 98.2 69 69.6
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.4e-19 97.8 67 68.7
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.7e-19 97.4 69 65.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 5.7e-19 97.4 67 68.7
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 5.7e-19 97.4 67 67.2
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 5.7e-19 97.4 69 66.7
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 7.5e-19 97.1 69 63.8
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 7.5e-19 97.1 69 63.8
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 9.8e-19 96.7 69 63.8
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.3e-18 96.3 62 71.0
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.7e-18 95.9 79 64.6
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.7e-18 95.9 61 68.9
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 4.8e-18 94.4 69 62.3
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.8e-18 94.4 67 64.2
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.8e-18 94.4 67 64.2
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.3e-18 94.0 62 72.6
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.1e-17 93.2 69 60.9
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.4e-17 92.0 70 57.1
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 2.4e-17 92.0 70 57.1
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.4e-17 92.0 69 62.3
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.1e-17 91.3 73 56.2
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.0e-16 89.0 67 59.7
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.0e-16 89.0 69 65.2
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.5e-14 82.8 75 57.3
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.9e-14 82.4 79 58.2
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.3e-14 81.6 69 53.6
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.2e-13 79.7 70 52.9
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.6e-13 79.3 51 72.5
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 3.6e-13 78.2 73 52.1
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.5e-11 72.8 70 52.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 9.8e-11 70.1 69 49.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 8.6e-07 57.0 69 43.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.5e-06 56.2 67 41.8
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.3e-06 55.1 56 44.6
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 7.3e-06 53.9 82 34.1


User provided reference genes

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