Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 5.5e-102 374.4 200 100.0
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 2.8e-58 229.2 203 66.0
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 4.0e-52 208.8 185 68.6
Lj4g0010683 Lotus japonicus HOM05D008369 ORTHO05D005932 3.3e-30 136.0 182 52.7
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 1.5e-27 127.1 185 41.6
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 8.6e-23 111.3 185 46.5
Phvul.003G188100 Phaseolus vulgaris HOM05D008369 ORTHO05D005932 4.7e-21 105.5 185 41.6
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 1.2e-19 100.9 195 41.5
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 4.4e-19 99.0 211 38.4
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 4.4e-19 99.0 166 45.2
Glyma.17G102500 Glycine max HOM05D008369 ORTHO05D005932 2.9e-18 96.3 165 42.4
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 8.3e-18 94.7 191 35.6
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 1.4e-17 94.0 225 35.1
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 7.1e-17 91.7 182 41.8
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 4.6e-16 89.0 201 38.3
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 7.3e-14 81.6 180 36.7
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 9.5e-14 81.3 166 35.5
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 2.1e-13 80.1 184 34.8
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 2.8e-13 79.7 180 37.8
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.4e-12 77.4 176 36.9
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 2.4e-12 76.6 200 35.5
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 2.4e-12 76.6 209 34.4
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 2.4e-12 76.6 198 37.4
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 3.1e-12 76.3 170 36.5
CANSAT80G1936 Cannabis sativa HOM05D008369 ORTHO05D005932 4.0e-12 75.9 199 40.2
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 1.2e-11 74.3 197 35.0
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 1.5e-11 73.9 182 36.3
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 4.4e-11 72.4 181 33.1
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 5.8e-11 72.0 181 33.7
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 9.9e-11 71.2 184 32.6
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 9.9e-11 71.2 214 30.8
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 1.7e-10 70.5 177 34.5
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 4.9e-10 68.9 206 29.1
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.9e-09 67.0 179 35.8
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 1.9e-09 67.0 179 31.3
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 7.1e-09 65.1 181 33.7
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 1.2e-08 64.3 195 29.7
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.6e-08 63.9 179 38.0
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 1.6e-08 63.9 173 31.2
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 2.7e-08 63.2 190 35.8
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 4.6e-08 62.4 167 36.5
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 7.8e-08 61.6 191 30.9
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 1.3e-07 60.8 180 32.2
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 3.0e-07 59.7 167 35.9
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 3.0e-07 59.7 159 30.8
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 3.9e-07 59.3 167 35.3
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 5.1e-07 58.9 192 29.7
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 1.1e-06 57.8 206 29.1
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 1.5e-06 57.4 195 29.7
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 2.5e-06 56.6 206 28.2
Sc12g0006540 Simmondsia chinensis HOM05D008369 ORTHO05D005932 3.3e-06 56.2 162 32.7
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 4.3e-06 55.8 171 33.3
MSTRG.11371 Avicennia marina HOM05D012087 ORTHO05D005932 7.3e-06 55.1 208 28.8
CARHR275120 Cardamine hirsuta HOM05D010063 ORTHO05D011941 7.3e-06 55.1 180 35.6
MELO3C002000.2 Cucumis melo HOM05D008369 ORTHO05D005932 7.3e-06 55.1 192 29.7
Solyc03g115730.3 Solanum lycopersicum HOM05D012087 ORTHO05D005932 7.3e-06 55.1 206 27.7
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 7.3e-06 55.1 219 26.9
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 9.6e-06 54.7 198 27.8
SGA_v2.0_scaffold313G48329 Striga asiatica HOM05D012087 ORTHO05D005932 9.6e-06 54.7 223 27.8


User provided reference genes

Program Settings