Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 5.4e-81 304.3 155 100.0
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 1.6e-56 223.0 151 77.5
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 8.9e-52 207.2 147 74.8
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 1.1e-44 183.7 144 68.8
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 1.4e-44 183.3 144 69.4
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 2.6e-43 179.1 142 69.7
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 1.3e-42 176.8 146 67.1
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 2.4e-41 172.6 138 69.6
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 9.3e-41 170.6 145 66.2
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 2.1e-40 169.5 147 66.0
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 4.6e-40 168.3 149 64.4
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 1.0e-39 167.2 146 65.8
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 2.3e-39 166.0 146 65.1
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 5.1e-39 164.9 145 65.5
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 7.3e-38 161.0 146 65.8
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 2.6e-35 152.5 144 62.5
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 4.9e-34 148.3 146 61.0
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 3.5e-32 142.1 142 60.6
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 4.8e-29 131.7 142 52.1
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 4.8e-29 131.7 144 52.8
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 6.2e-29 131.3 134 56.7
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 1.8e-28 129.8 138 56.5
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 1.8e-28 129.8 138 56.5
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 1.8e-28 129.8 143 60.1
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 4.0e-28 128.6 144 52.1
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 5.3e-28 128.3 144 53.5
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 5.3e-28 128.3 137 55.5
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 6.9e-28 127.9 141 51.8
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 6.9e-28 127.9 139 54.7
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 1.2e-27 127.1 142 54.9
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 3.4e-27 125.6 141 51.8
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 5.8e-27 124.8 142 50.0
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 6.5e-26 121.3 143 50.3
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 8.4e-26 120.9 142 48.6
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 4.2e-25 118.6 151 51.0
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 7.1e-25 117.9 140 49.3
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 9.3e-25 117.5 147 53.1
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.6e-24 116.7 143 49.7
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 1.6e-24 116.7 143 49.7
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 1.6e-24 116.7 143 51.7
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 2.1e-24 116.3 132 49.2
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 2.1e-24 116.3 148 49.3
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 6.0e-24 114.8 146 49.3
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 7.9e-24 114.4 144 50.0
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 7.9e-24 114.4 146 47.9
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.3e-23 113.6 144 49.3
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 2.3e-23 112.8 140 50.0
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 8.7e-23 110.9 159 46.5
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 1.1e-22 110.5 145 50.3
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 4.3e-22 108.6 140 48.6
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 7.4e-22 107.8 143 49.7
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 2.8e-21 105.9 142 46.5
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 3.7e-21 105.5 130 53.1
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 1.1e-20 104.0 140 49.3
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 2.4e-20 102.8 143 43.4
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 5.3e-20 101.7 143 44.1
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 6.9e-20 101.3 126 50.0
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 6.9e-20 101.3 146 46.6
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 1.2e-19 100.5 147 45.6
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 1.5e-19 100.1 141 44.0
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 1.5e-19 100.1 145 48.3
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 2.6e-19 99.4 147 45.6
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 5.8e-19 98.2 146 41.8
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 7.6e-19 97.8 138 47.1
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 1.7e-18 96.7 142 42.3
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 1.9e-17 93.2 127 48.0
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 3.2e-17 92.4 137 48.2
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 5.5e-17 91.7 151 41.1
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 9.3e-17 90.9 150 42.7
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 9.3e-17 90.9 149 42.3
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 1.6e-16 90.1 129 46.5
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 2.1e-16 89.7 150 42.7
Psat1g203160 Pisum sativum HOM05D007507 ORTHO05D009420 2.7e-16 89.4 105 56.2
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 4.6e-16 88.6 149 41.6
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 6.1e-16 88.2 97 53.6
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 6.1e-16 88.2 129 45.7
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 7.9e-16 87.8 128 43.0
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 1.1e-14 84.0 143 39.9
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 4.3e-14 82.0 134 43.3
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 7.4e-14 81.3 127 41.7
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 6.3e-13 78.2 139 41.7
arahy.Tifrunner.gnm1.ann1.PE4GJ8 Arachis hypogaea HOM05D000372 ORTHO05D009420 1.8e-12 76.6 64 64.1
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 1.8e-12 76.6 74 54.1
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 2.4e-12 76.3 123 39.8
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 1.5e-11 73.6 73 60.3
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 1.5e-11 73.6 127 40.9
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 4.5e-11 72.0 143 39.2
PSO541G3558 Papaver somniferum HOM05D007507 ORTHO05D009420 1.3e-10 70.5 90 46.7
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 2.9e-10 69.3 128 40.6
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 5.0e-10 68.6 144 36.8
SEGI_35508 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 5.0e-10 68.6 68 52.9
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 6.5e-10 68.2 127 38.6
SEGI_36970 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 1.1e-09 67.4 99 42.4
Haze_06387 Corylus avellana HOM05D007507 ORTHO05D009420 5.5e-09 65.1 58 62.1
SalBow8G0489 Salvia bowleyana HOM05D007507 ORTHO05D009420 1.6e-08 63.5 75 56.0
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 2.7e-08 62.8 74 48.6
SalBow8G4682 Salvia bowleyana HOM05D007507 ORTHO05D009420 2.7e-08 62.8 70 57.1
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.6e-08 62.4 119 38.7
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 4.6e-08 62.0 110 43.6
Hund21209 Selenicereus undatus HOM05D007507 ORTHO05D009420 6.1e-08 61.6 66 50.0
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.4e-07 60.5 70 52.9
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.8e-07 60.1 75 45.3
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 2.3e-07 59.7 107 40.2
Rhsim13G0180100 Rhododendron simsii HOM05D007507 ORTHO05D009420 2.3e-07 59.7 87 43.7
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.3e-07 59.7 73 47.9
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.0e-07 59.3 117 36.8
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 3.0e-07 59.3 120 36.7
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 3.0e-07 59.3 105 39.0
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 3.9e-07 58.9 109 40.4
Mapoly0541s0001 Marchantia polymorpha HOM05D007507 ORTHO05D009420 3.9e-07 58.9 81 44.4
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 5.1e-07 58.5 69 49.3
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 5.1e-07 58.5 117 36.8
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 5.1e-07 58.5 117 36.8
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 6.7e-07 58.2 70 50.0
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 6.7e-07 58.2 73 49.3
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.1e-06 57.4 106 41.5
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 1.1e-06 57.4 100 39.0
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.1e-06 57.4 74 43.2
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.5e-06 57.0 77 42.9
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.5e-06 57.0 70 48.6
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.5e-06 57.0 108 40.7
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 2.0e-06 56.6 120 35.0
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.0e-06 56.6 74 45.9
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.5e-06 56.2 72 47.2
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.3e-06 55.8 70 47.1
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 3.3e-06 55.8 70 48.6
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 3.3e-06 55.8 70 48.6
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.3e-06 55.8 108 38.9
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 3.3e-06 55.8 74 45.9
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 4.3e-06 55.5 70 47.1
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 4.3e-06 55.5 106 37.7
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 4.3e-06 55.5 74 44.6
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 5.7e-06 55.1 74 44.6
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 5.7e-06 55.1 70 45.7
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 5.7e-06 55.1 123 38.2
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.7e-06 55.1 74 44.6
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 7.4e-06 54.7 75 44.0
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 7.4e-06 54.7 75 44.0
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 7.4e-06 54.7 74 44.6
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 7.4e-06 54.7 74 41.9
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 9.7e-06 54.3 70 45.7
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 9.7e-06 54.3 74 43.2
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 9.7e-06 54.3 153 34.6
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 9.7e-06 54.3 83 42.2


User provided reference genes

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