Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.6e-172 609.4 325 100.0
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 2.3e-142 509.2 331 84.0
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.5e-128 463.4 330 78.8
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 9.1e-115 417.5 329 71.1
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.7e-114 416.0 329 70.5
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 4.0e-110 402.1 332 70.5
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.5e-104 382.9 333 68.8
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.0e-102 377.5 324 67.3
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.6e-101 372.9 331 65.6
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.9e-96 356.7 331 62.8
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 2.8e-95 352.8 325 64.9
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.0e-94 349.0 342 59.9
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 6.6e-89 331.6 334 58.1
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.5e-88 330.5 342 58.2
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 3.7e-84 315.8 338 55.6
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 4.9e-84 315.5 337 55.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.6e-82 310.5 335 55.5
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.6e-82 308.9 345 53.6
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.1e-80 304.3 339 53.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.8e-78 297.0 330 54.5
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 6.8e-78 295.0 330 55.5
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 6.8e-78 295.0 347 51.0
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.2e-77 294.3 364 50.3
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.4e-77 292.4 340 51.8
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 4.4e-77 292.4 340 53.2
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 7.1e-75 285.0 334 53.9
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 9.2e-75 284.6 334 52.1
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 6.0e-74 282.0 334 53.6
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-73 280.8 332 50.3
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.9e-72 276.9 331 50.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.1e-71 273.5 321 53.9
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 3.6e-71 272.7 324 54.0
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 6.2e-71 271.9 326 53.4
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 8.1e-71 271.6 326 52.8
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.2e-69 267.7 318 51.3
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 5.8e-69 265.4 340 47.9
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 7.6e-69 265.0 373 47.2
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.7e-68 263.8 340 48.8
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.2e-68 263.5 332 48.5
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.9e-68 263.1 340 51.5
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.4e-67 260.8 293 55.3
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 4.2e-67 259.2 327 48.0
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 5.4e-67 258.8 334 48.8
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.1e-67 258.5 332 48.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 9.3e-67 258.1 329 52.0
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.6e-66 257.3 336 47.9
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 2.1e-66 256.9 346 48.0
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 3.5e-66 256.1 327 47.4
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 7.8e-66 255.0 332 48.5
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.3e-65 254.2 329 48.9
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.1e-64 251.1 347 46.1
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.3e-64 249.2 311 48.9
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 5.6e-64 248.8 330 47.0
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 7.3e-64 248.4 348 46.6
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.3e-63 247.7 345 46.7
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.1e-63 246.9 336 47.6
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.1e-63 246.9 330 47.6
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 8.1e-63 245.0 329 47.4
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.4e-62 244.2 326 45.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.4e-62 244.2 342 47.1
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 1.4e-62 244.2 342 45.9
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 5.3e-62 242.3 301 48.8
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.9e-62 241.9 335 45.7
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 9.0e-62 241.5 330 48.2
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.2e-61 241.1 341 46.0
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.6e-61 240.0 339 45.7
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 2.6e-61 240.0 302 48.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 3.4e-61 239.6 314 48.1
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 3.4e-61 239.6 334 47.3
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 5.8e-61 238.8 334 46.7
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 7.6e-61 238.4 340 46.8
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.6e-61 238.4 330 46.7
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.3e-60 237.7 334 46.4
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 3.8e-60 236.1 336 44.6
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 8.4e-60 235.0 334 46.4
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.4e-59 233.4 341 44.6
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.1e-58 230.3 310 44.5
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 2.7e-58 229.9 238 56.7
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.7e-58 229.9 506 36.8
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.5e-58 229.6 333 46.5
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.6e-58 229.2 331 45.3
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 6.0e-58 228.8 337 46.0
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 7.9e-58 228.4 334 43.1
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.8e-57 227.3 328 43.3
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 1.8e-57 227.3 336 44.6
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.3e-57 226.9 334 42.8
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.0e-57 226.5 289 47.8
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 3.3e-56 223.0 290 47.9
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 2.1e-55 220.3 340 44.1
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 4.8e-55 219.2 351 43.0
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 6.2e-55 218.8 327 44.6
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.8e-54 217.2 309 45.3
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 2.4e-54 216.9 327 44.6
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.3e-52 211.1 338 41.7
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 2.9e-52 209.9 260 50.8
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.9e-52 209.9 316 45.9
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.9e-51 207.2 342 40.9
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.4e-51 206.8 331 43.2
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 4.2e-51 206.1 314 43.6
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 7.1e-51 205.3 415 36.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 7.1e-51 205.3 259 49.4
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 2.7e-50 203.4 283 46.6
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 4.6e-50 202.6 330 43.6
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.0e-49 201.4 335 43.0
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 2.3e-49 200.3 336 39.6
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 3.0e-49 199.9 320 40.9
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 3.0e-49 199.9 330 40.0
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 9.6e-48 194.9 342 39.5
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 9.6e-48 194.9 266 45.5
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.1e-46 191.4 349 40.7
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.4e-46 191.0 237 48.9
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.0e-46 189.5 291 42.3
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 4.0e-46 189.5 319 41.7
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 9.0e-46 188.3 250 45.2
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 4.5e-45 186.0 300 42.7
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.0e-44 184.9 305 42.3
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.7e-44 184.1 335 40.6
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 8.4e-44 181.8 326 39.6
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-43 181.4 338 37.6
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.0e-42 175.6 315 39.4
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.3e-41 174.5 329 38.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.3e-41 174.5 291 40.9
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 5.1e-41 172.6 308 40.3
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.6e-39 167.5 303 37.6
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 2.8e-39 166.8 296 39.5
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 2.2e-36 157.1 82 98.8
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.6e-34 151.0 190 46.8
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 5.7e-32 142.5 235 40.9
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.7e-26 123.6 160 47.5
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.8e-25 120.9 292 33.6
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.6e-24 117.1 114 57.9
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.3e-24 116.7 261 33.3
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.8e-20 103.2 114 54.4
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.7e-18 97.1 92 55.4
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 2.7e-18 97.1 193 34.7
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.7e-18 96.3 274 31.0
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 2.3e-17 94.0 371 25.6
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 1.7e-15 87.8 102 51.0
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 7.7e-13 79.0 86 48.8
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.9e-12 77.0 94 45.7
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.1e-11 75.1 116 40.5
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.5e-11 72.8 87 54.0
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 3.6e-10 70.1 84 48.8
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.8e-09 67.8 85 45.9
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 8.8e-09 65.5 112 37.5
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 2.6e-08 63.9 316 24.1
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 9.7e-08 62.0 108 37.0
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 1.4e-06 58.2 88 43.2


User provided reference genes

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