Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.3e-174 616.3 309 100.0
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 2.7e-164 582.0 309 91.6
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.3e-163 578.9 309 91.6
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 1.8e-160 569.3 309 89.3
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 3.5e-156 555.1 309 88.0
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 8.3e-150 533.9 307 83.7
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.7e-147 526.2 309 82.5
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 8.6e-147 523.9 309 83.2
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 4.3e-146 521.5 317 81.1
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.8e-144 516.2 307 81.4
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 2.3e-144 515.8 307 82.4
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 4.0e-144 515.0 325 78.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 4.0e-144 515.0 307 81.8
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 6.8e-144 514.2 307 82.1
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 6.4e-142 507.7 311 80.7
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.1e-141 506.9 309 80.3
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 3.2e-141 505.4 309 78.3
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 2.1e-140 502.7 310 79.4
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 7.8e-140 500.7 310 79.0
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 5.6e-138 494.6 309 77.7
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 9.5e-138 493.8 310 77.7
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 2.1e-137 492.7 310 76.8
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 2.1e-137 492.7 309 77.0
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.7e-137 491.5 309 78.0
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.7e-137 491.5 309 78.0
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 4.7e-137 491.5 310 77.4
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 4.7e-137 491.5 313 78.3
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 1.1e-136 490.3 309 75.7
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 3.1e-136 488.8 310 77.7
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 4.0e-136 488.4 303 76.9
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 5.2e-136 488.0 310 77.4
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 6.8e-136 487.6 308 76.0
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.2e-135 486.9 309 76.1
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 2.0e-135 486.1 310 78.1
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 5.8e-135 484.6 309 77.3
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 9.9e-135 483.8 308 75.6
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 3.7e-134 481.9 305 74.4
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 6.4e-134 481.1 310 74.2
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 2.4e-133 479.2 309 75.1
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 3.2e-133 478.8 310 73.9
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 9.2e-133 477.2 307 75.2
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.6e-132 476.5 310 71.6
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.7e-132 475.7 310 72.9
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 3.0e-131 472.2 310 76.1
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 5.1e-131 471.5 310 74.5
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 5.1e-131 471.5 310 74.2
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-130 470.3 308 75.0
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.3e-130 468.8 310 74.2
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 7.3e-130 467.6 388 64.9
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 3.6e-129 465.3 310 73.9
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 6.2e-129 464.5 309 71.8
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.1e-128 463.8 313 73.2
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 2.4e-128 462.6 306 75.5
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.1e-128 462.2 310 73.5
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 6.8e-128 461.1 280 80.4
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 1.5e-127 459.9 306 74.5
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.6e-127 459.1 307 73.3
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 3.4e-127 458.8 349 65.9
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 4.4e-127 458.4 307 72.0
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 5.8e-127 458.0 305 71.8
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.7e-126 456.4 314 70.4
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 3.8e-126 455.3 277 78.7
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 3.8e-126 455.3 306 72.9
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.9e-125 453.0 306 71.6
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 3.2e-125 452.2 326 69.6
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.2e-124 450.3 310 71.0
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 2.7e-124 449.1 299 71.9
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.5e-124 448.7 311 70.4
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 4.6e-124 448.4 311 71.1
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 4.6e-124 448.4 311 71.1
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.7e-123 446.4 331 66.2
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 2.3e-123 446.0 311 72.0
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 5.1e-123 444.9 311 71.1
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 5.1e-123 444.9 320 68.8
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 6.6e-123 444.5 306 71.9
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 6.6e-123 444.5 310 71.9
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.5e-122 443.4 306 71.6
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.9e-122 443.0 308 71.8
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 2.5e-122 442.6 305 71.8
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 4.3e-122 441.8 306 71.6
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 4.3e-122 441.8 310 69.7
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 7.3e-122 441.0 305 71.5
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 7.3e-122 441.0 310 69.4
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.6e-121 439.9 309 70.6
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 3.6e-121 438.7 306 70.9
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 4.0e-120 435.3 311 67.8
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 4.0e-120 435.3 311 67.8
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 3.4e-119 432.2 308 68.8
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 9.9e-119 430.6 306 65.4
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 3.8e-118 428.7 306 67.3
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.9e-117 426.4 312 67.6
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.4e-117 426.0 340 64.1
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 9.3e-117 424.1 307 70.4
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 5.6e-114 414.8 244 81.6
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 4.8e-113 411.8 297 67.7
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 6.2e-113 411.4 304 65.8
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.8e-112 409.8 306 63.4
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.0e-112 408.7 284 71.5
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.7e-110 403.3 240 80.8
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 6.4e-110 401.4 266 74.4
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.4e-104 383.6 310 61.6
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 7.1e-101 371.3 251 70.1
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.2e-100 370.5 241 72.6
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 1.5e-98 363.6 309 61.5
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.4e-96 357.1 306 60.1
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 2.7e-92 342.8 217 77.0
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 2.4e-88 329.7 300 55.7
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 1.3e-86 323.9 211 73.0
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.9e-85 320.1 295 55.9
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.1e-80 302.4 290 52.4
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.2e-76 290.8 301 50.2
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 4.4e-66 255.8 291 45.4
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.5e-61 240.7 147 77.6
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.6e-60 236.1 145 77.9
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 7.7e-55 218.4 318 43.1
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.3e-54 217.6 180 55.6
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 2.1e-52 210.3 290 39.0
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.1e-48 198.0 155 61.3
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.5e-42 177.6 184 55.4
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.9e-41 173.3 149 61.7
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 1.0e-38 164.9 149 58.4
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 1.1e-37 161.4 97 81.4
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 2.1e-36 157.1 98 79.6
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.7e-31 140.2 100 67.0
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.9e-21 107.5 63 82.5
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 6.2e-20 102.4 66 71.2
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.3e-17 94.7 70 58.6
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 4.3e-13 79.7 64 60.9
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 7.3e-13 79.0 59 64.4
Psat6g049160 Pisum sativum HOM05D006018 ORTHO05D320225 7.6e-10 68.9 37 83.8


User provided reference genes

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