Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 4.7e-146 521.2 263 100.0
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 3.8e-135 485.0 265 92.1
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.8e-130 468.8 266 90.2
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 8.4e-119 430.6 266 85.3
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 9.1e-105 384.0 267 78.3
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.0e-103 380.6 266 77.8
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 7.4e-99 364.4 226 84.5
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.0e-95 354.0 229 82.5
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 1.7e-95 353.2 229 82.5
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 6.5e-95 351.3 264 75.0
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 1.4e-94 350.1 269 71.4
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.4e-92 343.6 248 72.2
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.3e-92 342.8 290 67.9
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 4.4e-91 338.6 253 72.3
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.7e-90 335.5 274 67.5
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 7.0e-89 331.3 266 68.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 9.1e-89 330.9 259 68.7
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.2e-88 330.5 256 69.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 2.0e-88 329.7 266 68.8
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 5.9e-88 328.2 287 63.4
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 8.5e-87 324.3 265 68.3
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.9e-86 323.2 247 68.4
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.9e-86 323.2 264 68.2
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.0e-84 317.4 250 68.0
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.4e-84 317.0 250 69.6
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.8e-84 316.6 250 68.0
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 8.8e-84 314.3 271 66.1
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 8.8e-84 314.3 260 67.3
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.2e-83 313.9 250 69.2
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 2.6e-83 312.8 240 69.6
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.3e-83 312.4 250 68.8
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.3e-83 312.4 245 69.0
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.4e-83 312.0 242 69.4
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 9.7e-83 310.8 246 69.1
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 2.2e-82 309.7 260 67.7
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.8e-82 309.3 264 64.8
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.1e-81 307.4 246 68.3
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.4e-81 306.2 244 66.4
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.2e-80 303.9 246 65.9
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 2.0e-80 303.1 261 65.5
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.0e-80 303.1 246 65.4
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.0e-80 303.1 263 64.6
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 5.9e-80 301.6 243 67.5
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.0e-79 300.8 246 65.0
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 2.2e-79 299.7 258 64.3
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.9e-79 299.3 263 63.9
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 2.9e-79 299.3 249 65.1
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 6.5e-79 298.1 275 60.4
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 6.5e-79 298.1 269 62.1
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 8.5e-79 297.7 227 73.1
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.1e-78 297.4 265 61.1
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.5e-78 297.0 255 65.1
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 3.2e-78 295.8 258 64.7
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 1.6e-77 293.5 270 63.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 8.0e-77 291.2 221 70.6
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 8.0e-77 291.2 303 57.1
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.8e-76 290.0 254 65.0
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 4.0e-76 288.9 244 64.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 3.4e-75 285.8 246 65.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 4.4e-75 285.4 220 70.0
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 9.8e-75 284.3 254 64.6
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 9.8e-75 284.3 256 60.9
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.8e-74 282.7 270 61.5
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 9.1e-73 277.7 264 60.2
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.3e-71 273.9 219 68.0
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 2.5e-70 269.6 249 62.2
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 2.8e-69 266.2 245 58.8
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 8.0e-69 264.6 264 58.7
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 3.0e-68 262.7 268 58.2
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.8e-68 261.5 249 61.4
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-67 260.0 237 62.0
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.4e-67 259.2 246 60.6
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.6e-64 250.4 247 58.7
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.1e-62 244.2 265 58.9
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.1e-62 244.2 278 55.0
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 1.5e-62 243.8 259 57.5
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 9.5e-62 241.1 256 60.5
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.8e-61 239.6 256 58.6
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 2.3e-60 236.5 248 59.3
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 5.2e-60 235.3 256 57.8
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.2e-59 234.2 266 54.5
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.5e-59 233.8 221 61.5
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 4.4e-59 232.3 266 53.8
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.9e-58 229.6 244 57.8
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.1e-57 227.6 181 66.9
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.1e-57 227.6 273 53.8
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 3.2e-57 226.1 261 52.1
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.6e-56 223.8 408 40.2
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.6e-56 223.8 272 51.8
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 3.5e-56 222.6 260 55.8
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 2.3e-55 219.9 249 55.0
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.1e-54 217.6 256 56.2
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 2.8e-53 213.0 188 63.8
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 3.6e-53 212.6 179 67.0
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 3.6e-53 212.6 244 55.7
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 4.0e-52 209.1 248 56.5
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 4.0e-52 209.1 248 56.5
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 4.0e-52 209.1 213 56.3
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 5.2e-52 208.8 220 54.1
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.5e-51 207.2 201 57.2
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 7.5e-51 204.9 251 54.2
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.2e-50 203.4 189 61.4
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 3.7e-50 202.6 251 54.2
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 3.7e-50 202.6 251 54.2
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 3.7e-50 202.6 251 54.2
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.4e-49 200.7 202 58.9
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 9.2e-49 198.0 197 58.4
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 1.0e-47 194.5 203 57.1
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.3e-47 193.4 224 52.7
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 6.6e-47 191.8 223 53.8
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 9.5e-46 188.0 228 51.8
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 6.8e-44 181.8 298 46.0
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 6.4e-42 175.3 250 48.4
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.4e-41 174.1 279 43.7
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 9.5e-38 161.4 223 50.7
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 1.1e-36 157.9 184 51.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 3.0e-31 139.8 163 52.8
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 7.6e-27 125.2 123 58.5
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.3e-26 124.4 198 44.9
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.3e-22 109.4 213 42.3
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.6e-22 109.0 126 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 8.1e-21 105.1 204 41.7
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 5.8e-19 99.0 236 39.8
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 6.4e-18 95.5 56 82.1
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 3.3e-14 83.2 163 41.7
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 4.8e-13 79.3 60 63.3
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.4e-12 77.8 53 67.9
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.7e-10 70.9 130 43.1
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.6e-08 64.3 88 47.7
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.3e-07 61.2 194 31.4
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 1.8e-07 60.8 53 60.4
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 8.7e-07 58.5 49 61.2
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 5.6e-06 55.8 47 61.7


User provided reference genes

Program Settings