Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19740 Trifolium pratense HOM05D008027 ORTHO05D009737 4.9e-31 137.1 67 100.0
TPR.G19754 Trifolium pratense HOM05D008027 ORTHO05D009737 4.9e-31 137.1 67 100.0
Medtr2g007950 Medicago truncatula HOM05D008027 ORTHO05D009737 1.1e-25 119.4 67 85.1
Psat0s5304g0040 Pisum sativum HOM05D008027 ORTHO05D009737 1.4e-22 109.0 68 77.9
Lalb_Chr18g0060771 Lupinus albus HOM05D008027 ORTHO05D009737 1.4e-17 92.4 68 67.6
Lj6g0012761 Lotus japonicus HOM05D008027 ORTHO05D009737 1.5e-16 89.0 65 64.6
Glyma.15G049600 Glycine max HOM05D008027 ORTHO05D009737 4.5e-16 87.4 58 72.4
Glyma.08G183000 Glycine max HOM05D008027 ORTHO05D009737 7.6e-16 86.7 57 71.9
CANSAT11G0026 Cannabis sativa HOM05D008027 ORTHO05D009737 6.4e-15 83.6 64 64.1
arahy.Tifrunner.gnm1.ann1.6UKJ3N Arachis hypogaea HOM05D008027 ORTHO05D009737 1.1e-14 82.8 58 70.7
arahy.Tifrunner.gnm1.ann1.70LJUW Arachis hypogaea HOM05D008027 ORTHO05D009737 5.5e-14 80.5 62 66.1
MD15G1417600 Malus domestica HOM05D008027 ORTHO05D009737 9.3e-14 79.7 60 63.3
CiPaw.05G041100 Carya illinoinensis HOM05D008027 ORTHO05D009737 1.2e-13 79.3 62 58.1
Sabra15G0135300 Salix brachista HOM05D008027 ORTHO05D009737 3.5e-13 77.8 62 59.7
QL07p009661 Quercus lobata HOM05D008027 ORTHO05D009737 1.8e-12 75.5 64 54.7
Thecc.02G042600 Theobroma cacao HOM05D008027 ORTHO05D009737 1.8e-12 75.5 61 57.4
Gohir.A04G126500 Gossypium hirsutum HOM05D008027 ORTHO05D009737 6.7e-12 73.6 63 55.6
Gohir.D04G171400 Gossypium hirsutum HOM05D008027 ORTHO05D009737 8.7e-12 73.2 63 55.6
Phvul.006G210400 Phaseolus vulgaris HOM05D008027 ORTHO05D009737 1.5e-11 72.4 65 56.9
Gorai.012G160300 Gossypium raimondii HOM05D008027 ORTHO05D009737 1.9e-11 72.0 63 55.6
Prupe.1G561600 Prunus persica HOM05D008027 ORTHO05D009737 1.9e-11 72.0 70 51.4
Atru.chr6.991 Acer truncatum HOM05D008027 ORTHO05D009737 2.5e-11 71.6 41 75.6
Cfa005561 Carpinus fangiana HOM05D008027 ORTHO05D009737 4.3e-11 70.9 58 53.4
Dinv24246 Davidia involucrata HOM05D008027 ORTHO05D009737 4.3e-11 70.9 62 54.8
ClCG05G009870 Citrullus lanatus HOM05D008027 ORTHO05D009737 1.3e-10 69.3 66 48.5
A09p39140 Brassica napus HOM05D008027 ORTHO05D009737 2.1e-10 68.6 65 55.4
BraA09t39413Z Brassica rapa HOM05D008027 ORTHO05D009737 2.1e-10 68.6 65 55.4
Glyma.03G068101 Glycine max HOM05D008027 ORTHO05D009737 2.1e-10 68.6 40 72.5
Hma1.2p1_0557F.1_g178210 Hydrangea macrophylla HOM05D008027 ORTHO05D009737 2.1e-10 68.6 65 53.8
Cpa.g.sc2.39 Carica papaya HOM05D000028 ORTHO05D001343 2.8e-10 68.2 63 49.2
AL1G40080 Arabidopsis lyrata HOM05D008027 ORTHO05D009737 4.8e-10 67.4 70 50.0
Sp1g22980 Schrenkiella parvula HOM05D008027 ORTHO05D009737 8.2e-10 66.6 65 53.8
Sed0014181 Sechium edule HOM05D008027 ORTHO05D009737 8.2e-10 66.6 59 50.8
BolC5t31257H Brassica oleracea HOM05D008027 ORTHO05D009737 1.1e-09 66.2 65 52.3
CsaV3_3G018720 Cucumis sativus L. HOM05D008027 ORTHO05D009737 1.1e-09 66.2 57 54.4
Lsat_1_v5_gn_7_79741 Lactuca sativa HOM05D008027 ORTHO05D009737 1.1e-09 66.2 67 47.8
Aqoxy5G04168 Aquilegia oxysepala HOM05D008027 ORTHO05D009737 1.4e-09 65.9 67 49.3
BcaC05g26684 Brassica carinata HOM05D008027 ORTHO05D009737 1.8e-09 65.5 63 54.0
Thhalv10009240m.g Eutrema salsugineum HOM05D008027 ORTHO05D009737 1.8e-09 65.5 70 50.0
Aa31LG7G9220 Aethionema arabicum HOM05D008027 ORTHO05D009737 2.4e-09 65.1 70 48.6
BcaB03g12037 Brassica carinata HOM05D008027 ORTHO05D009737 3.1e-09 64.7 65 52.3
COL.COLO4_17908 Corchorus olitorius HOM05D008027 ORTHO05D009737 3.1e-09 64.7 60 48.3
BraA08t34629Z Brassica rapa HOM05D008027 ORTHO05D009737 4.0e-09 64.3 65 52.3
Nn5g28740 Nelumbo nucifera HOM05D008027 ORTHO05D009737 6.9e-09 63.5 64 46.9
BcaC01g01678 Brassica carinata HOM05D008027 ORTHO05D009737 9.0e-09 63.2 65 50.8
BolC3t19607H Brassica oleracea HOM05D008027 ORTHO05D009737 9.0e-09 63.2 65 50.8
TWI14G0810 Tripterygium wilfordii HOM05D008027 ORTHO05D009737 9.0e-09 63.2 63 46.0
BcaC05g26480 Brassica carinata HOM05D008027 ORTHO05D009737 1.2e-08 62.8 65 50.8
A08p26830 Brassica napus HOM05D008027 ORTHO05D009737 1.2e-08 62.8 68 48.5
Prupe.4G249100 Prunus persica HOM05D008027 ORTHO05D009737 1.2e-08 62.8 41 63.4
Migut.N01020 Erythranthe guttata HOM05D008027 ORTHO05D009737 1.5e-08 62.4 58 50.0
AT1G25275 Arabidopsis thaliana HOM05D008027 ORTHO05D009737 2.6e-08 61.6 70 45.7
CARHR026260 Cardamine hirsuta HOM05D008027 ORTHO05D009737 2.6e-08 61.6 65 49.2
Carub.0001s2529 Capsella rubella HOM05D008027 ORTHO05D009737 3.4e-08 61.2 66 47.0
Manes.09G074900 Manihot esculenta HOM05D008027 ORTHO05D009737 3.4e-08 61.2 61 45.9
C03p73120 Brassica napus HOM05D008027 ORTHO05D009737 5.8e-08 60.5 63 50.8
Peaxi162Scf01290g00250 Petunia axillaris HOM05D011465 ORTHO05D009737 5.8e-08 60.5 68 41.2
C05p25230 Brassica napus HOM05D008027 ORTHO05D009737 7.6e-08 60.1 63 50.8
Potri.015G116800 Populus trichocarpa HOM05D008027 ORTHO05D009737 7.6e-08 60.1 62 46.8
FvH4_5g30240 Fragaria vesca HOM05D008027 ORTHO05D009737 2.2e-07 58.5 66 48.5
FAN18G1531 Fragaria x ananassa HOM05D008027 ORTHO05D009737 2.2e-07 58.5 66 48.5
RcHm_v2.0_Chr7g0224551 Rosa chinensis HOM05D008027 ORTHO05D009737 2.2e-07 58.5 66 48.5
Aqoxy5G04171 Aquilegia oxysepala HOM05D008027 ORTHO05D009737 2.9e-07 58.2 44 63.6
Oeu018394.1 Olea europaea HOM05D008027 ORTHO05D009737 8.4e-07 56.6 57 49.1
Nitab4.5_0002684g0120 Nicotiana tabacum HOM05D011465 ORTHO05D009737 1.4e-06 55.8 58 43.1
Sopen01g047250 Solanum pennellii HOM05D011465 ORTHO05D009737 2.5e-06 55.1 60 43.3
FAN04G0864 Fragaria x ananassa HOM05D008027 ORTHO05D009737 5.5e-06 53.9 66 47.0


User provided reference genes

Program Settings