Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.6e-109 399.4 198 100.0
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.7e-98 361.3 198 88.9
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.7e-98 361.3 198 88.9
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 5.8e-96 354.4 198 86.4
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 5.1e-92 341.3 198 82.8
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.4e-89 333.2 198 80.3
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.4e-89 333.2 198 80.8
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 5.2e-89 331.3 198 80.3
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.5e-88 329.7 198 79.3
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.9e-88 327.0 198 77.3
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.7e-87 326.2 198 77.8
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 2.8e-82 308.9 170 86.5
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 74.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.5e-80 303.1 198 72.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 73.7
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 72.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.7e-79 299.7 198 71.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 72.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 69.2
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 70.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 70.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 71.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.9e-78 296.2 199 71.9
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 69.7
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 70.2
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 70.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 72.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 71.7
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 72.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 70.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 69.7
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 69.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 71.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 71.7
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 70.2
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 70.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 70.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.5e-77 292.0 199 72.9
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 68.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 69.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 69.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 7.9e-77 290.8 198 70.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 69.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 68.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 69.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 70.2
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.9e-76 288.5 198 68.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 68.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 69.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 69.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 67.2
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 67.2
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 66.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 68.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.3e-75 285.4 200 67.5
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 68.7
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 67.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 66.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 66.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 68.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.1e-74 282.7 217 65.9
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 67.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 69.2
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 6.2e-74 281.2 206 65.0
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 68.2
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 67.7
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.4e-73 280.0 216 63.9
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 68.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.4e-73 280.0 200 69.0
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 69.2
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 66.7
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.4e-73 279.3 206 64.6
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 65.2
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 6.9e-73 277.7 198 67.7
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 6.9e-73 277.7 198 67.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 9.0e-73 277.3 219 62.6
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 9.0e-73 277.3 198 68.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 9.0e-73 277.3 198 68.2
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.6e-72 275.8 198 66.7
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 9.9e-72 273.9 198 66.7
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.9e-72 273.9 198 65.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 65.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.7e-71 273.1 198 67.2
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 2.2e-71 272.7 198 65.7
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 6.4e-71 271.2 198 64.1
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.1e-69 266.2 234 57.3
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.7e-69 265.8 234 56.8
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.0e-68 263.8 241 56.8
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.5e-67 259.2 176 69.9
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.5e-67 259.2 233 56.7
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.5e-67 259.2 236 53.8
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 5.6e-67 258.1 170 71.2
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.1e-65 253.8 253 53.0
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.4e-65 252.7 198 62.6
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-64 250.0 180 65.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 2.6e-64 249.2 171 66.7
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 4.5e-64 248.4 198 61.1
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 6.5e-63 244.6 173 66.5
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.4e-62 243.4 198 58.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.2e-61 240.4 198 57.1
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.7e-61 239.2 191 59.7
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.5e-61 238.8 198 62.6
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.1e-60 235.0 188 62.2
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 6.3e-58 228.0 160 66.9
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 8.2e-58 227.6 155 69.0
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.6e-56 222.6 120 86.7
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 9.3e-54 214.2 145 69.7
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.6e-53 213.4 167 61.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.0e-52 210.7 198 55.6
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.0e-52 210.7 135 73.3
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.7e-52 208.0 198 48.0
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 3.3e-51 205.7 198 48.5
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 3.1e-49 199.1 197 47.7
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 6.9e-49 198.0 196 48.0
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.0e-47 194.1 130 71.5
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.2e-45 187.2 152 56.6
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 1.4e-44 183.7 160 54.4
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.5e-43 180.3 130 68.5
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 4.1e-41 172.2 185 51.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-40 170.2 87 85.1
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.0e-39 167.5 115 68.7
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.0e-39 167.5 143 58.7
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.7e-39 166.8 115 69.6
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 3.8e-39 165.6 111 73.0
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 6.1e-37 158.3 143 54.5
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 3.3e-35 152.5 142 51.4
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.8e-31 139.0 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.0e-31 138.7 115 52.2
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.8e-28 130.2 145 42.1
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 6.7e-28 128.3 77 79.2
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 4.4e-27 125.6 96 67.7
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.0e-24 116.7 115 53.0
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.0e-23 114.4 145 50.3
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 74.0
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 2.2e-23 113.2 77 74.0
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.8e-23 112.5 77 72.7
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.9e-22 110.2 77 71.4
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 5.5e-22 108.6 94 59.6
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 9.4e-22 107.8 77 68.8
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 9.4e-22 107.8 77 68.8
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 6.1e-21 105.1 65 81.5
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 6.1e-21 105.1 52 92.3
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.0e-21 104.8 81 65.4
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.4e-20 104.0 69 73.9
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.0e-20 102.8 99 52.5
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.0e-20 102.4 77 63.6
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.6e-19 99.8 82 57.3
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.2e-18 96.7 72 65.3
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.7e-18 95.9 75 64.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.1e-17 92.8 67 61.2
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 2.0e-16 90.1 46 95.7
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.5e-14 84.0 55 67.3
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 1.0e-12 77.8 191 25.1
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 5.2e-12 75.5 64 59.4
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 3.4e-11 72.8 119 34.5
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 2.8e-10 69.7 64 43.8
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 2.8e-10 69.7 55 49.1
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 6.3e-10 68.6 56 55.4
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.1e-09 65.9 61 52.5
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 7.0e-09 65.1 190 34.7
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 9.2e-09 64.7 56 51.8
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.5e-06 57.4 54 51.9
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.5e-06 56.6 44 63.6


User provided reference genes

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