Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 3.0e-44 181.4 88 100.0
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.7e-21 105.1 52 92.3
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.0e-20 103.2 55 81.8
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 8.7e-20 100.1 55 81.8
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 2.2e-18 95.5 52 80.8
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 3.7e-18 94.7 64 68.8
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.3e-17 90.9 60 71.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.3e-17 90.9 60 71.7
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.5e-16 87.8 59 67.8
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.3e-15 86.3 62 61.3
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.9e-15 85.1 61 62.3
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 2.9e-15 85.1 60 65.0
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 3.8e-15 84.7 60 66.7
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 8.5e-15 83.6 60 63.3
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 8.5e-15 83.6 60 65.0
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.1e-14 83.2 60 65.0
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.9e-14 82.4 56 62.5
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.5e-14 82.0 60 63.3
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 7.2e-14 80.5 48 68.8
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 7.2e-14 80.5 52 69.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 9.4e-14 80.1 61 57.4
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.2e-13 79.7 60 61.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.2e-13 79.7 64 56.2
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.6e-13 79.3 61 55.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.1e-13 79.0 61 55.7
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.1e-13 79.0 54 63.0
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.7e-13 78.6 61 55.7
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.7e-13 78.6 61 55.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.6e-13 78.2 63 52.4
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.6e-13 77.8 48 70.8
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 6.1e-13 77.4 60 55.0
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 6.1e-13 77.4 48 68.8
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.0e-12 76.6 47 70.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.0e-12 76.6 52 63.5
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 1.0e-12 76.6 52 63.5
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.0e-12 76.6 52 63.5
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.0e-12 76.6 64 53.1
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.8e-12 75.9 61 55.7
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 2.3e-12 75.5 52 63.5
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.3e-12 75.5 48 66.7
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.3e-12 75.5 50 62.0
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.3e-12 75.5 61 54.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 3.9e-12 74.7 53 60.4
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.9e-12 74.7 61 57.4
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.9e-12 74.7 61 57.4
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.9e-12 74.7 61 57.4
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 3.9e-12 74.7 52 61.5
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.7e-12 73.9 60 56.7
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 6.7e-12 73.9 54 59.3
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 6.7e-12 73.9 52 61.5
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 6.7e-12 73.9 50 62.0
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.1e-11 73.2 60 55.0
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 1.5e-11 72.8 48 64.6
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.5e-11 72.8 48 62.5
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.5e-11 72.8 48 64.6
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.0e-11 72.4 52 59.6
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 2.0e-11 72.4 52 59.6
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.0e-11 72.4 52 59.6
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.0e-11 72.4 52 59.6
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 2.0e-11 72.4 48 64.6
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 2.0e-11 72.4 61 54.1
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.0e-11 72.4 48 64.6
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 2.0e-11 72.4 60 56.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 2.5e-11 72.0 52 59.6
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 3.3e-11 71.6 48 62.5
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.3e-11 71.2 60 55.0
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.3e-11 71.2 61 49.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 5.7e-11 70.9 48 64.6
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 5.7e-11 70.9 52 59.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 5.7e-11 70.9 55 58.2
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 5.7e-11 70.9 49 59.2
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 7.4e-11 70.5 47 68.1
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 7.4e-11 70.5 48 64.6
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 7.4e-11 70.5 48 62.5
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 9.7e-11 70.1 52 59.6
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 9.7e-11 70.1 52 59.6
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 9.7e-11 70.1 52 59.6
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 9.7e-11 70.1 48 62.5
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 9.7e-11 70.1 48 58.3
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 9.7e-11 70.1 60 53.3
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 9.7e-11 70.1 47 59.6
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.7e-10 69.3 58 50.0
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.7e-10 69.3 50 62.0
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 2.2e-10 68.9 52 55.8
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 2.2e-10 68.9 48 60.4
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.2e-10 68.9 61 49.2
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.2e-10 68.9 49 59.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.8e-10 68.6 58 53.4
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.8e-10 68.6 52 57.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.8e-10 68.6 48 62.5
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 2.8e-10 68.6 48 58.3
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.8e-10 68.6 50 60.0
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.8e-10 68.6 48 60.4
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 3.7e-10 68.2 60 50.0
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 3.7e-10 68.2 48 60.4
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 3.7e-10 68.2 48 60.4
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.8e-10 67.8 59 50.8
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 4.8e-10 67.8 52 51.9
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 6.3e-10 67.4 59 52.5
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 6.3e-10 67.4 48 60.4
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 8.2e-10 67.0 61 44.3
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 8.2e-10 67.0 47 61.7
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.1e-09 66.6 48 54.2
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.1e-09 66.6 49 57.1
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.1e-09 66.6 65 47.7
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.1e-09 66.6 65 47.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.1e-09 66.6 58 46.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.1e-09 66.6 47 57.4
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.4e-09 66.2 60 53.3
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.8e-09 65.9 47 59.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.8e-09 65.9 47 59.6
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.1e-09 65.1 48 58.3
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.3e-09 64.3 48 58.3
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.3e-09 64.3 52 50.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.3e-09 64.3 48 56.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.3e-09 64.3 48 56.2
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.2e-08 63.2 48 52.1
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.5e-08 62.8 48 54.2
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.5e-08 62.8 45 57.8
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.5e-08 62.8 48 58.3
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 2.0e-08 62.4 48 56.2
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 4.5e-08 61.2 48 50.0
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.7e-07 59.3 59 49.2
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 2.2e-07 58.9 60 45.0
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 3.8e-07 58.2 60 46.7
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 3.8e-07 58.2 60 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.5e-07 57.4 53 41.5
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 8.5e-07 57.0 52 40.4
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 5.5e-06 54.3 46 50.0


User provided reference genes

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