Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 6.0e-172 607.4 315 100.0
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.1e-109 400.6 359 64.1
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.1e-109 400.6 359 64.1
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.4e-107 393.7 360 63.9
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 2.1e-100 369.8 359 61.8
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 3.4e-66 256.1 314 51.9
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 4.6e-63 245.7 270 55.9
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 7.4e-61 238.4 346 45.1
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 1.6e-60 237.3 329 46.8
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 3.0e-54 216.5 280 48.2
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 1.5e-53 214.2 281 47.7
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 1.3e-46 191.0 354 41.2
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 6.7e-38 162.2 258 42.6
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 2.5e-37 160.2 273 43.6
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.3e-36 157.9 326 39.0
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 3.7e-36 156.4 297 39.7
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 3.7e-36 156.4 270 41.9
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 4.8e-36 156.0 334 38.0
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 6.3e-36 155.6 277 39.7
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 6.3e-36 155.6 302 40.4
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 1.4e-35 154.5 270 40.7
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 1.2e-34 151.4 296 43.6
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 2.6e-34 150.2 239 45.6
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 4.5e-34 149.4 270 41.5
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 1.0e-33 148.3 256 41.0
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 1.0e-33 148.3 250 40.8
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.0e-33 148.3 320 37.5
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.4e-32 144.4 320 35.6
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 5.5e-32 142.5 267 39.0
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 1.2e-31 141.4 173 46.8
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.6e-31 141.0 254 41.3
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 2.1e-31 140.6 328 36.0
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 2.7e-31 140.2 280 38.2
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 8.8e-30 135.2 223 39.9
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 3.3e-29 133.3 258 38.8
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 1.7e-28 131.0 285 35.4
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 2.2e-28 130.6 181 46.4
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 3.7e-28 129.8 197 42.1
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 6.3e-28 129.0 230 39.1
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 8.2e-28 128.6 179 45.3
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 8.2e-28 128.6 199 41.7
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 1.1e-27 128.3 206 43.2
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.1e-27 128.3 260 39.2
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.8e-27 127.5 155 47.7
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.8e-27 127.5 172 47.1
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 2.4e-27 127.1 203 42.4
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 3.1e-27 126.7 197 42.1
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 3.1e-27 126.7 183 44.3
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 3.1e-27 126.7 241 40.2
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 5.3e-27 125.9 204 42.2
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 1.2e-26 124.8 243 39.1
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 1.5e-26 124.4 204 42.2
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 1.5e-26 124.4 204 42.2
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 7.7e-26 122.1 224 39.7
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 7.7e-26 122.1 235 39.1
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 7.7e-26 122.1 235 39.1
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 7.7e-26 122.1 235 39.1
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.0e-25 121.7 199 40.2
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 1.3e-25 121.3 245 37.6
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.7e-25 120.9 173 45.1
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 8.5e-25 118.6 211 38.4
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.5e-24 117.1 190 42.6
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 4.2e-24 116.3 144 43.8
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 4.2e-24 116.3 178 42.7
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 5.5e-24 115.9 229 39.7
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 9.4e-24 115.2 146 43.2
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 1.2e-23 114.8 244 36.9
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.7e-23 113.6 178 41.6
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.7e-23 113.6 166 42.2
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 2.0e-21 107.5 201 36.8
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 2.0e-21 107.5 146 47.9
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.6e-21 107.1 167 43.7
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 2.6e-21 107.1 167 43.7
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 4.4e-21 106.3 178 41.0
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 4.4e-21 106.3 216 38.4
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.7e-21 105.9 228 39.5
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 9.7e-21 105.1 151 43.0
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 1.3e-20 104.8 153 44.4
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.3e-20 104.8 199 39.2
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 1.3e-20 104.8 146 46.6
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 1.3e-20 104.8 146 46.6
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 1.7e-20 104.4 207 36.7
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.8e-20 103.6 228 36.0
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 3.7e-20 103.2 268 34.7
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 8.2e-20 102.1 114 53.5
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.1e-19 101.7 172 42.4
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 3.1e-19 100.1 148 44.6
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 5.3e-19 99.4 148 44.6
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 5.3e-19 99.4 175 39.4
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 9.1e-19 98.6 147 46.3
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 1.2e-18 98.2 170 35.9
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.2e-18 98.2 230 35.2
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.6e-18 97.8 164 41.5
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.6e-18 97.1 175 38.3
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 3.5e-18 96.7 145 39.3
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 4.5e-18 96.3 145 43.4
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.5e-18 96.3 110 52.7
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 4.5e-18 96.3 208 35.6
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 4.5e-18 96.3 262 35.9
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 5.9e-18 95.9 169 40.2
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 5.9e-18 95.9 176 36.9
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 5.9e-18 95.9 195 35.4
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 2.9e-17 93.6 171 37.4
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 3.8e-17 93.2 198 35.9
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 1.1e-16 91.7 153 41.8
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 2.5e-16 90.5 278 32.0
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 2.5e-16 90.5 199 34.7
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.5e-16 89.4 114 48.2
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.5e-16 89.4 114 47.4
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 7.2e-16 89.0 114 47.4
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 9.4e-16 88.6 171 37.4
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 1.2e-15 88.2 180 34.4
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-15 87.4 169 38.5
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-15 87.4 200 35.0
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-15 87.4 200 35.0
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-15 87.4 200 35.0
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-15 87.4 200 35.0
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 1.4e-14 84.7 172 36.0
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 4.0e-14 83.2 129 43.4
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 1.3e-12 78.2 87 44.8
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.7e-12 77.8 200 33.0
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 1.4e-11 74.7 215 31.6
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-11 73.9 80 51.2
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 5.9e-10 69.3 97 43.3
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 7.7e-10 68.9 120 38.3
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 2.9e-09 67.0 135 34.8
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 3.8e-09 66.6 158 33.5
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 3.8e-09 66.6 137 36.5
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 5.0e-09 66.2 181 28.2
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 5.0e-09 66.2 134 35.1
ECA248G2956 Erigeron canadensis HOM05D005305 ORTHO05D006394 6.5e-09 65.9 120 38.3
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 6.5e-09 65.9 143 32.9
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 6.5e-09 65.9 144 34.7
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.5e-09 65.5 109 36.7
COL.COLO4_20450 Corchorus olitorius HOM05D002727 ORTHO05D002856 8.5e-09 65.5 146 32.2
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 1.9e-08 64.3 148 31.1
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.2e-08 63.5 109 34.9
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 3.2e-08 63.5 132 30.3
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 4.2e-08 63.2 166 30.1
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 4.2e-08 63.2 138 34.1
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 5.5e-08 62.8 97 38.1
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 9.4e-08 62.0 97 37.1
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 9.4e-08 62.0 140 33.6
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 1.2e-07 61.6 137 30.7
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.6e-07 61.2 122 37.7
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.1e-07 60.8 122 37.7
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 2.1e-07 60.8 136 33.1
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.7e-07 60.5 181 28.7
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 2.7e-07 60.5 124 36.3
FvH4_3g08610 Fragaria vesca HOM05D005305 ORTHO05D006394 2.7e-07 60.5 120 36.7
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 3.6e-07 60.1 138 33.3
FAN11G0652 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.6e-07 60.1 118 37.3
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.6e-07 60.1 113 36.3
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 3.6e-07 60.1 110 36.4
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 4.7e-07 59.7 146 29.5
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 4.7e-07 59.7 144 29.9
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 6.1e-07 59.3 143 32.2
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.0e-07 58.9 126 36.5
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 1.4e-06 58.2 202 29.7
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.8e-06 57.8 167 32.9
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 1.8e-06 57.8 101 36.6
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 1.8e-06 57.8 101 36.6
AUR62014130 Chenopodium quinoa HOM05D002727 ORTHO05D002856 2.3e-06 57.4 138 31.9
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 2.3e-06 57.4 104 39.4
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 2.3e-06 57.4 132 31.1
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.3e-06 57.4 177 27.7
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 3.0e-06 57.0 104 39.4
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 3.0e-06 57.0 100 36.0
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 4.0e-06 56.6 96 33.3
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 4.0e-06 56.6 157 31.8
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 5.2e-06 56.2 123 31.7
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 5.2e-06 56.2 138 33.3
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 5.2e-06 56.2 134 31.3
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 5.2e-06 56.2 134 31.3
Lalb_Chr24g0403301 Lupinus albus HOM05D002727 ORTHO05D002856 5.2e-06 56.2 137 29.9
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 5.2e-06 56.2 117 37.6
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 5.2e-06 56.2 117 37.6
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 6.8e-06 55.8 120 36.7
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.8e-06 55.8 127 34.6
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 6.8e-06 55.8 159 27.7
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 8.8e-06 55.5 89 43.8
FAN20G2269 Fragaria x ananassa HOM05D005305 ORTHO05D006394 8.8e-06 55.5 46 63.0


User provided reference genes

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